Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18545 and CA265_RS18550 are separated by 1 nucleotides CA265_RS18550 and CA265_RS18555 overlap by 22 nucleotides CA265_RS18555 and CA265_RS18560 are separated by 409 nucleotides
CA265_RS18545: CA265_RS18545 - argininosuccinate synthase, at 4,609,313 to 4,610,500
_RS18545
CA265_RS18550: CA265_RS18550 - N-acetyltransferase, at 4,610,502 to 4,611,200
_RS18550
CA265_RS18555: CA265_RS18555 - hypothetical protein, at 4,611,179 to 4,611,373
_RS18555
CA265_RS18560: CA265_RS18560 - hypothetical protein, at 4,611,783 to 4,612,484
_RS18560
Position (kb) 4610
4611
4612 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4609.608 kb on - strand, within CA265_RS18545 at 4609.672 kb on + strand, within CA265_RS18545 at 4609.857 kb on - strand, within CA265_RS18545 at 4609.857 kb on - strand, within CA265_RS18545 at 4609.862 kb on + strand, within CA265_RS18545 at 4610.005 kb on - strand, within CA265_RS18545 at 4610.005 kb on - strand, within CA265_RS18545 at 4610.066 kb on - strand, within CA265_RS18545 at 4610.095 kb on + strand, within CA265_RS18545 at 4610.096 kb on - strand, within CA265_RS18545 at 4610.104 kb on + strand, within CA265_RS18545 at 4610.113 kb on + strand, within CA265_RS18545 at 4610.187 kb on + strand, within CA265_RS18545 at 4610.188 kb on - strand, within CA265_RS18545 at 4610.229 kb on - strand, within CA265_RS18545 at 4610.295 kb on + strand, within CA265_RS18545 at 4610.296 kb on - strand, within CA265_RS18545 at 4610.395 kb on + strand at 4610.420 kb on + strand at 4610.420 kb on + strand at 4610.443 kb on - strand at 4610.462 kb on - strand at 4610.520 kb on - strand at 4610.647 kb on - strand, within CA265_RS18550 at 4610.800 kb on + strand, within CA265_RS18550 at 4610.992 kb on - strand, within CA265_RS18550 at 4611.227 kb on - strand, within CA265_RS18555 at 4611.291 kb on - strand, within CA265_RS18555 at 4611.351 kb on - strand, within CA265_RS18555 at 4611.483 kb on - strand at 4611.490 kb on - strand at 4611.493 kb on - strand at 4611.563 kb on + strand at 4611.609 kb on + strand at 4611.609 kb on + strand at 4611.694 kb on + strand at 4611.744 kb on - strand at 4611.782 kb on + strand at 4611.783 kb on - strand at 4611.884 kb on + strand, within CA265_RS18560 at 4611.885 kb on - strand, within CA265_RS18560 at 4611.889 kb on + strand, within CA265_RS18560 at 4611.898 kb on + strand, within CA265_RS18560 at 4611.899 kb on - strand, within CA265_RS18560 at 4611.934 kb on - strand, within CA265_RS18560 at 4611.942 kb on + strand, within CA265_RS18560 at 4611.959 kb on - strand, within CA265_RS18560 at 4611.959 kb on - strand, within CA265_RS18560 at 4611.976 kb on + strand, within CA265_RS18560 at 4611.977 kb on - strand, within CA265_RS18560 at 4611.999 kb on + strand, within CA265_RS18560 at 4612.085 kb on - strand, within CA265_RS18560 at 4612.098 kb on + strand, within CA265_RS18560 at 4612.098 kb on + strand, within CA265_RS18560 at 4612.140 kb on - strand, within CA265_RS18560 at 4612.140 kb on - strand, within CA265_RS18560 at 4612.143 kb on + strand, within CA265_RS18560 at 4612.188 kb on + strand, within CA265_RS18560 at 4612.188 kb on + strand, within CA265_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 4,609,608 - CA265_RS18545 0.25 -3.2 4,609,672 + CA265_RS18545 0.30 -2.3 4,609,857 - CA265_RS18545 0.46 -2.6 4,609,857 - CA265_RS18545 0.46 -0.1 4,609,862 + CA265_RS18545 0.46 -2.1 4,610,005 - CA265_RS18545 0.58 -1.9 4,610,005 - CA265_RS18545 0.58 -3.6 4,610,066 - CA265_RS18545 0.63 -3.3 4,610,095 + CA265_RS18545 0.66 -3.0 4,610,096 - CA265_RS18545 0.66 +0.9 4,610,104 + CA265_RS18545 0.67 -2.7 4,610,113 + CA265_RS18545 0.67 -4.4 4,610,187 + CA265_RS18545 0.74 -2.8 4,610,188 - CA265_RS18545 0.74 -4.5 4,610,229 - CA265_RS18545 0.77 -3.5 4,610,295 + CA265_RS18545 0.83 -1.6 4,610,296 - CA265_RS18545 0.83 -2.8 4,610,395 + -3.3 4,610,420 + -4.6 4,610,420 + -3.2 4,610,443 - -2.5 4,610,462 - +1.4 4,610,520 - -0.2 4,610,647 - CA265_RS18550 0.21 -0.0 4,610,800 + CA265_RS18550 0.43 -3.0 4,610,992 - CA265_RS18550 0.70 -0.9 4,611,227 - CA265_RS18555 0.25 +0.9 4,611,291 - CA265_RS18555 0.57 +0.2 4,611,351 - CA265_RS18555 0.88 +0.3 4,611,483 - -0.5 4,611,490 - -0.1 4,611,493 - -1.1 4,611,563 + -0.7 4,611,609 + -0.3 4,611,609 + +0.3 4,611,694 + -0.3 4,611,744 - +0.5 4,611,782 + -0.3 4,611,783 - +0.6 4,611,884 + CA265_RS18560 0.14 -0.1 4,611,885 - CA265_RS18560 0.15 -0.5 4,611,889 + CA265_RS18560 0.15 +0.7 4,611,898 + CA265_RS18560 0.16 +0.1 4,611,899 - CA265_RS18560 0.17 +0.8 4,611,934 - CA265_RS18560 0.22 -0.7 4,611,942 + CA265_RS18560 0.23 +0.3 4,611,959 - CA265_RS18560 0.25 -0.1 4,611,959 - CA265_RS18560 0.25 -0.7 4,611,976 + CA265_RS18560 0.27 +0.3 4,611,977 - CA265_RS18560 0.28 +0.0 4,611,999 + CA265_RS18560 0.31 +0.4 4,612,085 - CA265_RS18560 0.43 -0.3 4,612,098 + CA265_RS18560 0.45 -0.4 4,612,098 + CA265_RS18560 0.45 +0.2 4,612,140 - CA265_RS18560 0.51 -0.4 4,612,140 - CA265_RS18560 0.51 +0.6 4,612,143 + CA265_RS18560 0.51 +0.0 4,612,188 + CA265_RS18560 0.58 +0.4 4,612,188 + CA265_RS18560 0.58 +1.1
Or see this region's nucleotide sequence