Experiment: L-Glutamic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02120 and CA265_RS02125 are separated by 4 nucleotides CA265_RS02125 and CA265_RS02130 are separated by 6 nucleotides CA265_RS02130 and CA265_RS02135 are separated by 196 nucleotides
CA265_RS02120: CA265_RS02120 - acyl transferase, at 531,654 to 532,652
_RS02120
CA265_RS02125: CA265_RS02125 - hypothetical protein, at 532,657 to 533,016
_RS02125
CA265_RS02130: CA265_RS02130 - penicillin acylase family protein, at 533,023 to 535,452
_RS02130
CA265_RS02135: CA265_RS02135 - TonB-dependent receptor, at 535,649 to 538,540
_RS02135
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.076 kb on + strand, within CA265_RS02120 at 532.076 kb on + strand, within CA265_RS02120 at 532.094 kb on - strand, within CA265_RS02120 at 532.169 kb on + strand, within CA265_RS02120 at 532.174 kb on - strand, within CA265_RS02120 at 532.227 kb on - strand, within CA265_RS02120 at 532.228 kb on + strand, within CA265_RS02120 at 532.229 kb on - strand, within CA265_RS02120 at 532.327 kb on + strand, within CA265_RS02120 at 532.327 kb on + strand, within CA265_RS02120 at 532.357 kb on - strand, within CA265_RS02120 at 532.357 kb on - strand, within CA265_RS02120 at 532.385 kb on + strand, within CA265_RS02120 at 532.424 kb on + strand, within CA265_RS02120 at 532.513 kb on - strand, within CA265_RS02120 at 532.526 kb on - strand, within CA265_RS02120 at 532.558 kb on - strand at 532.615 kb on - strand at 532.622 kb on + strand at 532.622 kb on + strand at 532.623 kb on - strand at 532.623 kb on - strand at 532.649 kb on - strand at 532.649 kb on - strand at 532.658 kb on + strand at 532.718 kb on + strand, within CA265_RS02125 at 532.819 kb on + strand, within CA265_RS02125 at 532.831 kb on - strand, within CA265_RS02125 at 532.846 kb on + strand, within CA265_RS02125 at 532.847 kb on - strand, within CA265_RS02125 at 532.994 kb on - strand at 532.996 kb on + strand at 533.001 kb on + strand at 533.019 kb on + strand at 533.050 kb on - strand at 533.104 kb on - strand at 533.128 kb on - strand at 533.131 kb on - strand at 533.136 kb on - strand at 533.246 kb on - strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.254 kb on - strand at 533.254 kb on - strand at 533.256 kb on + strand at 533.257 kb on - strand at 533.324 kb on - strand, within CA265_RS02130 at 533.387 kb on - strand, within CA265_RS02130 at 533.392 kb on - strand, within CA265_RS02130 at 533.431 kb on + strand, within CA265_RS02130 at 533.431 kb on + strand, within CA265_RS02130 at 533.569 kb on - strand, within CA265_RS02130 at 533.651 kb on + strand, within CA265_RS02130 at 533.652 kb on - strand, within CA265_RS02130 at 533.733 kb on + strand, within CA265_RS02130 at 533.741 kb on + strand, within CA265_RS02130 at 533.784 kb on + strand, within CA265_RS02130 at 533.784 kb on + strand, within CA265_RS02130 at 533.828 kb on + strand, within CA265_RS02130 at 533.847 kb on + strand, within CA265_RS02130 at 533.853 kb on - strand, within CA265_RS02130 at 533.853 kb on - strand, within CA265_RS02130 at 533.856 kb on - strand, within CA265_RS02130 at 533.919 kb on + strand, within CA265_RS02130 at 533.988 kb on + strand, within CA265_RS02130 at 534.051 kb on + strand, within CA265_RS02130 at 534.052 kb on - strand, within CA265_RS02130 at 534.055 kb on + strand, within CA265_RS02130 at 534.055 kb on + strand, within CA265_RS02130 at 534.056 kb on - strand, within CA265_RS02130 at 534.148 kb on + strand at 534.208 kb on + strand, within CA265_RS02130 at 534.247 kb on + strand, within CA265_RS02130 at 534.248 kb on - strand, within CA265_RS02130 at 534.270 kb on - strand, within CA265_RS02130 at 534.272 kb on + strand, within CA265_RS02130 at 534.273 kb on - strand, within CA265_RS02130 at 534.284 kb on - strand, within CA265_RS02130 at 534.305 kb on - strand, within CA265_RS02130 at 534.345 kb on + strand, within CA265_RS02130 at 534.346 kb on - strand, within CA265_RS02130 at 534.346 kb on - strand, within CA265_RS02130 at 534.351 kb on + strand, within CA265_RS02130 at 534.354 kb on - strand, within CA265_RS02130 at 534.354 kb on - strand, within CA265_RS02130 at 534.494 kb on + strand, within CA265_RS02130 at 534.498 kb on + strand, within CA265_RS02130 at 534.499 kb on - strand, within CA265_RS02130 at 534.499 kb on - strand, within CA265_RS02130 at 534.601 kb on - strand, within CA265_RS02130 at 534.622 kb on - strand, within CA265_RS02130 at 534.827 kb on + strand, within CA265_RS02130 at 534.850 kb on + strand, within CA265_RS02130 at 534.851 kb on - strand, within CA265_RS02130 at 534.854 kb on - strand, within CA265_RS02130 at 534.854 kb on - strand, within CA265_RS02130 at 534.930 kb on - strand, within CA265_RS02130 at 534.935 kb on - strand, within CA265_RS02130 at 534.935 kb on - strand, within CA265_RS02130 at 534.966 kb on + strand, within CA265_RS02130 at 534.969 kb on - strand, within CA265_RS02130 at 534.989 kb on + strand, within CA265_RS02130 at 534.990 kb on - strand, within CA265_RS02130 at 535.055 kb on + strand, within CA265_RS02130 at 535.102 kb on - strand, within CA265_RS02130 at 535.102 kb on - strand, within CA265_RS02130 at 535.181 kb on - strand, within CA265_RS02130 at 535.184 kb on + strand, within CA265_RS02130 at 535.199 kb on + strand, within CA265_RS02130 at 535.200 kb on - strand, within CA265_RS02130 at 535.228 kb on - strand at 535.271 kb on - strand at 535.271 kb on - strand at 535.351 kb on + strand at 535.374 kb on + strand at 535.375 kb on - strand at 535.447 kb on - strand at 535.502 kb on - strand at 535.532 kb on - strand at 535.612 kb on + strand at 535.684 kb on - strand at 535.727 kb on - strand at 535.729 kb on + strand at 535.754 kb on - strand at 535.788 kb on + strand at 535.788 kb on + strand at 535.793 kb on - strand at 535.847 kb on - strand at 535.876 kb on - strand at 535.887 kb on - strand at 535.905 kb on + strand at 535.983 kb on + strand, within CA265_RS02135 at 535.984 kb on - strand, within CA265_RS02135 at 536.000 kb on - strand, within CA265_RS02135 at 536.000 kb on - strand, within CA265_RS02135 at 536.013 kb on + strand, within CA265_RS02135 at 536.056 kb on + strand, within CA265_RS02135 at 536.101 kb on + strand, within CA265_RS02135 at 536.122 kb on + strand, within CA265_RS02135 at 536.123 kb on - strand, within CA265_RS02135 at 536.153 kb on - strand, within CA265_RS02135 at 536.177 kb on - strand, within CA265_RS02135 at 536.180 kb on - strand, within CA265_RS02135 at 536.245 kb on + strand, within CA265_RS02135 at 536.274 kb on + strand, within CA265_RS02135 at 536.274 kb on + strand, within CA265_RS02135 at 536.274 kb on + strand, within CA265_RS02135 at 536.275 kb on - strand, within CA265_RS02135 at 536.278 kb on + strand, within CA265_RS02135 at 536.329 kb on + strand, within CA265_RS02135 at 536.329 kb on + strand, within CA265_RS02135 at 536.369 kb on - strand, within CA265_RS02135
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (N) remove 532,076 + CA265_RS02120 0.42 -0.6 532,076 + CA265_RS02120 0.42 -0.4 532,094 - CA265_RS02120 0.44 +0.1 532,169 + CA265_RS02120 0.52 -1.5 532,174 - CA265_RS02120 0.52 +0.4 532,227 - CA265_RS02120 0.57 -1.4 532,228 + CA265_RS02120 0.57 -1.8 532,229 - CA265_RS02120 0.58 -1.7 532,327 + CA265_RS02120 0.67 +0.0 532,327 + CA265_RS02120 0.67 -3.0 532,357 - CA265_RS02120 0.70 -0.6 532,357 - CA265_RS02120 0.70 -0.1 532,385 + CA265_RS02120 0.73 -0.2 532,424 + CA265_RS02120 0.77 -0.2 532,513 - CA265_RS02120 0.86 -0.9 532,526 - CA265_RS02120 0.87 -0.1 532,558 - +0.3 532,615 - -0.8 532,622 + -0.4 532,622 + +0.1 532,623 - +0.3 532,623 - -0.3 532,649 - -0.1 532,649 - +0.9 532,658 + +0.1 532,718 + CA265_RS02125 0.17 -0.0 532,819 + CA265_RS02125 0.45 +0.5 532,831 - CA265_RS02125 0.48 -0.8 532,846 + CA265_RS02125 0.53 -0.2 532,847 - CA265_RS02125 0.53 +0.8 532,994 - +0.0 532,996 + +0.5 533,001 + +0.4 533,019 + +0.1 533,050 - -0.2 533,104 - +0.4 533,128 - +0.5 533,131 - +0.8 533,136 - +0.1 533,246 - -0.2 533,253 + +0.2 533,253 + +0.7 533,254 - -0.0 533,254 - +0.5 533,256 + -0.4 533,257 - -0.4 533,324 - CA265_RS02130 0.12 +0.8 533,387 - CA265_RS02130 0.15 -0.1 533,392 - CA265_RS02130 0.15 -0.3 533,431 + CA265_RS02130 0.17 -0.5 533,431 + CA265_RS02130 0.17 -0.0 533,569 - CA265_RS02130 0.22 -0.4 533,651 + CA265_RS02130 0.26 -0.0 533,652 - CA265_RS02130 0.26 -0.3 533,733 + CA265_RS02130 0.29 -0.4 533,741 + CA265_RS02130 0.30 -0.1 533,784 + CA265_RS02130 0.31 +0.6 533,784 + CA265_RS02130 0.31 -0.5 533,828 + CA265_RS02130 0.33 +0.0 533,847 + CA265_RS02130 0.34 -0.7 533,853 - CA265_RS02130 0.34 +0.5 533,853 - CA265_RS02130 0.34 -0.3 533,856 - CA265_RS02130 0.34 +0.3 533,919 + CA265_RS02130 0.37 -0.1 533,988 + CA265_RS02130 0.40 +0.2 534,051 + CA265_RS02130 0.42 +0.6 534,052 - CA265_RS02130 0.42 +0.4 534,055 + CA265_RS02130 0.42 +0.1 534,055 + CA265_RS02130 0.42 +0.5 534,056 - CA265_RS02130 0.43 -0.6 534,148 + -1.2 534,208 + CA265_RS02130 0.49 +0.0 534,247 + CA265_RS02130 0.50 +0.3 534,248 - CA265_RS02130 0.50 +1.0 534,270 - CA265_RS02130 0.51 -0.0 534,272 + CA265_RS02130 0.51 -0.3 534,273 - CA265_RS02130 0.51 -0.4 534,284 - CA265_RS02130 0.52 +0.9 534,305 - CA265_RS02130 0.53 +0.5 534,345 + CA265_RS02130 0.54 +0.5 534,346 - CA265_RS02130 0.54 +1.2 534,346 - CA265_RS02130 0.54 +0.1 534,351 + CA265_RS02130 0.55 +0.4 534,354 - CA265_RS02130 0.55 -0.8 534,354 - CA265_RS02130 0.55 +0.6 534,494 + CA265_RS02130 0.61 -0.1 534,498 + CA265_RS02130 0.61 -0.1 534,499 - CA265_RS02130 0.61 -0.3 534,499 - CA265_RS02130 0.61 +0.3 534,601 - CA265_RS02130 0.65 +0.5 534,622 - CA265_RS02130 0.66 -0.1 534,827 + CA265_RS02130 0.74 +0.5 534,850 + CA265_RS02130 0.75 +0.1 534,851 - CA265_RS02130 0.75 -1.8 534,854 - CA265_RS02130 0.75 +0.1 534,854 - CA265_RS02130 0.75 +0.3 534,930 - CA265_RS02130 0.78 -0.3 534,935 - CA265_RS02130 0.79 +0.9 534,935 - CA265_RS02130 0.79 -0.1 534,966 + CA265_RS02130 0.80 +1.4 534,969 - CA265_RS02130 0.80 -0.8 534,989 + CA265_RS02130 0.81 -0.7 534,990 - CA265_RS02130 0.81 +0.4 535,055 + CA265_RS02130 0.84 -0.1 535,102 - CA265_RS02130 0.86 -0.5 535,102 - CA265_RS02130 0.86 +0.4 535,181 - CA265_RS02130 0.89 +0.4 535,184 + CA265_RS02130 0.89 -0.0 535,199 + CA265_RS02130 0.90 -0.7 535,200 - CA265_RS02130 0.90 -0.1 535,228 - -0.6 535,271 - -0.0 535,271 - +0.3 535,351 + -0.7 535,374 + -1.1 535,375 - +0.5 535,447 - +1.7 535,502 - -0.1 535,532 - +0.4 535,612 + +0.6 535,684 - +0.7 535,727 - +0.3 535,729 + +2.7 535,754 - +0.5 535,788 + +0.0 535,788 + +0.7 535,793 - +0.3 535,847 - +0.3 535,876 - +0.3 535,887 - -1.0 535,905 + +0.2 535,983 + CA265_RS02135 0.12 +0.9 535,984 - CA265_RS02135 0.12 -0.5 536,000 - CA265_RS02135 0.12 +1.5 536,000 - CA265_RS02135 0.12 -0.2 536,013 + CA265_RS02135 0.13 +0.2 536,056 + CA265_RS02135 0.14 +0.4 536,101 + CA265_RS02135 0.16 -0.1 536,122 + CA265_RS02135 0.16 -0.4 536,123 - CA265_RS02135 0.16 +0.5 536,153 - CA265_RS02135 0.17 -0.8 536,177 - CA265_RS02135 0.18 +0.7 536,180 - CA265_RS02135 0.18 +0.3 536,245 + CA265_RS02135 0.21 +0.8 536,274 + CA265_RS02135 0.22 +0.8 536,274 + CA265_RS02135 0.22 +0.2 536,274 + CA265_RS02135 0.22 +0.2 536,275 - CA265_RS02135 0.22 -0.2 536,278 + CA265_RS02135 0.22 -0.2 536,329 + CA265_RS02135 0.24 -0.2 536,329 + CA265_RS02135 0.24 -0.0 536,369 - CA265_RS02135 0.25 -0.3
Or see this region's nucleotide sequence