Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23375

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23365 and ABZR87_RS23370 overlap by 4 nucleotidesABZR87_RS23370 and ABZR87_RS23375 overlap by 20 nucleotidesABZR87_RS23375 and ABZR87_RS23380 are separated by 5 nucleotidesABZR87_RS23380 and ABZR87_RS23385 are separated by 48 nucleotides ABZR87_RS23365: ABZR87_RS23365 - hybrid sensor histidine kinase/response regulator, at 1,607,969 to 1,610,299 _RS23365 ABZR87_RS23370: ABZR87_RS23370 - chemotaxis protein CheW, at 1,610,296 to 1,610,997 _RS23370 ABZR87_RS23375: ABZR87_RS23375 - CheR family methyltransferase, at 1,610,978 to 1,612,432 _RS23375 ABZR87_RS23380: ABZR87_RS23380 - chemotaxis protein CheW, at 1,612,438 to 1,612,902 _RS23380 ABZR87_RS23385: ABZR87_RS23385 - methyl-accepting chemotaxis protein, at 1,612,951 to 1,614,627 _RS23385 Position (kb) 1610 1611 1612 1613Strain fitness (log2 ratio) -2 -1 0 1 2at 1610.027 kb on - strand, within ABZR87_RS23365at 1610.540 kb on + strand, within ABZR87_RS23370at 1610.540 kb on + strand, within ABZR87_RS23370at 1610.541 kb on - strand, within ABZR87_RS23370at 1610.637 kb on + strand, within ABZR87_RS23370at 1610.638 kb on - strand, within ABZR87_RS23370at 1610.891 kb on + strand, within ABZR87_RS23370at 1611.156 kb on + strand, within ABZR87_RS23375at 1611.174 kb on + strand, within ABZR87_RS23375at 1611.175 kb on - strand, within ABZR87_RS23375at 1611.246 kb on + strand, within ABZR87_RS23375at 1611.246 kb on + strand, within ABZR87_RS23375at 1611.247 kb on - strand, within ABZR87_RS23375at 1611.247 kb on - strand, within ABZR87_RS23375at 1611.253 kb on + strand, within ABZR87_RS23375at 1611.253 kb on + strand, within ABZR87_RS23375at 1611.254 kb on - strand, within ABZR87_RS23375at 1611.254 kb on - strand, within ABZR87_RS23375at 1611.254 kb on - strand, within ABZR87_RS23375at 1611.398 kb on + strand, within ABZR87_RS23375at 1611.454 kb on + strand, within ABZR87_RS23375at 1611.689 kb on + strand, within ABZR87_RS23375at 1611.689 kb on + strand, within ABZR87_RS23375at 1611.689 kb on + strand, within ABZR87_RS23375at 1611.690 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.766 kb on - strand, within ABZR87_RS23375at 1611.798 kb on + strand, within ABZR87_RS23375at 1611.865 kb on + strand, within ABZR87_RS23375at 1611.865 kb on + strand, within ABZR87_RS23375at 1612.059 kb on + strand, within ABZR87_RS23375at 1612.059 kb on + strand, within ABZR87_RS23375at 1612.059 kb on + strand, within ABZR87_RS23375at 1612.060 kb on - strand, within ABZR87_RS23375at 1612.255 kb on - strand, within ABZR87_RS23375at 1612.300 kb on + strandat 1612.300 kb on + strandat 1612.673 kb on + strand, within ABZR87_RS23380at 1612.673 kb on + strand, within ABZR87_RS23380at 1612.865 kb on + strandat 1612.865 kb on + strandat 1612.866 kb on - strandat 1612.866 kb on - strandat 1612.895 kb on + strandat 1612.895 kb on + strandat 1612.895 kb on + strandat 1612.895 kb on + strandat 1612.896 kb on - strandat 1612.896 kb on - strandat 1613.092 kb on - strandat 1613.309 kb on + strand, within ABZR87_RS23385at 1613.310 kb on - strand, within ABZR87_RS23385

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,610,027 - ABZR87_RS23365 0.88 +0.5
1,610,540 + ABZR87_RS23370 0.35 +0.6
1,610,540 + ABZR87_RS23370 0.35 +1.5
1,610,541 - ABZR87_RS23370 0.35 -0.4
1,610,637 + ABZR87_RS23370 0.49 +1.8
1,610,638 - ABZR87_RS23370 0.49 -0.5
1,610,891 + ABZR87_RS23370 0.85 -0.8
1,611,156 + ABZR87_RS23375 0.12 -0.0
1,611,174 + ABZR87_RS23375 0.13 +0.6
1,611,175 - ABZR87_RS23375 0.14 -2.4
1,611,246 + ABZR87_RS23375 0.18 +0.1
1,611,246 + ABZR87_RS23375 0.18 +1.0
1,611,247 - ABZR87_RS23375 0.18 +1.1
1,611,247 - ABZR87_RS23375 0.18 +0.6
1,611,253 + ABZR87_RS23375 0.19 +0.1
1,611,253 + ABZR87_RS23375 0.19 +2.1
1,611,254 - ABZR87_RS23375 0.19 +1.2
1,611,254 - ABZR87_RS23375 0.19 -0.0
1,611,254 - ABZR87_RS23375 0.19 -0.7
1,611,398 + ABZR87_RS23375 0.29 -1.0
1,611,454 + ABZR87_RS23375 0.33 +0.2
1,611,689 + ABZR87_RS23375 0.49 +0.0
1,611,689 + ABZR87_RS23375 0.49 -0.8
1,611,689 + ABZR87_RS23375 0.49 -1.7
1,611,690 - ABZR87_RS23375 0.49 -0.1
1,611,766 - ABZR87_RS23375 0.54 -0.8
1,611,766 - ABZR87_RS23375 0.54 -0.5
1,611,766 - ABZR87_RS23375 0.54 -0.0
1,611,766 - ABZR87_RS23375 0.54 +0.4
1,611,766 - ABZR87_RS23375 0.54 -1.1
1,611,798 + ABZR87_RS23375 0.56 -0.2
1,611,865 + ABZR87_RS23375 0.61 +1.4
1,611,865 + ABZR87_RS23375 0.61 -0.8
1,612,059 + ABZR87_RS23375 0.74 -1.4
1,612,059 + ABZR87_RS23375 0.74 +0.6
1,612,059 + ABZR87_RS23375 0.74 +0.0
1,612,060 - ABZR87_RS23375 0.74 -1.2
1,612,255 - ABZR87_RS23375 0.88 -0.4
1,612,300 + -0.3
1,612,300 + +0.4
1,612,673 + ABZR87_RS23380 0.51 -0.2
1,612,673 + ABZR87_RS23380 0.51 +0.8
1,612,865 + -0.3
1,612,865 + -0.5
1,612,866 - -1.1
1,612,866 - -0.6
1,612,895 + +1.5
1,612,895 + -0.8
1,612,895 + -0.5
1,612,895 + +1.9
1,612,896 - -1.1
1,612,896 - -2.0
1,613,092 - +0.8
1,613,309 + ABZR87_RS23385 0.21 +0.5
1,613,310 - ABZR87_RS23385 0.21 -0.4

Or see this region's nucleotide sequence