Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23225

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23220 and ABZR87_RS23225 are separated by 6 nucleotidesABZR87_RS23225 and ABZR87_RS23230 are separated by 137 nucleotides ABZR87_RS23220: ABZR87_RS23220 - xylose ABC transporter ATP-binding protein, at 1,571,764 to 1,573,311 _RS23220 ABZR87_RS23225: ABZR87_RS23225 - sugar ABC transporter permease, at 1,573,318 to 1,574,520 _RS23225 ABZR87_RS23230: ABZR87_RS23230 - NAD(P)-dependent oxidoreductase, at 1,574,658 to 1,575,584 _RS23230 Position (kb) 1573 1574 1575Strain fitness (log2 ratio) -3 -2 -1 0 1at 1572.367 kb on + strand, within ABZR87_RS23220at 1572.367 kb on + strand, within ABZR87_RS23220at 1572.367 kb on + strand, within ABZR87_RS23220at 1572.368 kb on - strand, within ABZR87_RS23220at 1573.099 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.108 kb on + strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.109 kb on - strand, within ABZR87_RS23220at 1573.414 kb on + strandat 1573.465 kb on + strand, within ABZR87_RS23225at 1573.465 kb on + strand, within ABZR87_RS23225at 1573.466 kb on - strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.104 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.140 kb on + strand, within ABZR87_RS23225at 1574.368 kb on + strand, within ABZR87_RS23225at 1574.368 kb on + strand, within ABZR87_RS23225at 1574.369 kb on - strand, within ABZR87_RS23225at 1574.667 kb on + strandat 1574.667 kb on + strandat 1574.667 kb on + strandat 1574.668 kb on - strandat 1574.959 kb on - strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.048 kb on + strand, within ABZR87_RS23230at 1575.049 kb on - strand, within ABZR87_RS23230at 1575.049 kb on - strand, within ABZR87_RS23230at 1575.049 kb on - strand, within ABZR87_RS23230at 1575.049 kb on - strand, within ABZR87_RS23230at 1575.049 kb on - strand, within ABZR87_RS23230at 1575.133 kb on - strand, within ABZR87_RS23230at 1575.150 kb on + strand, within ABZR87_RS23230at 1575.151 kb on - strand, within ABZR87_RS23230at 1575.303 kb on + strand, within ABZR87_RS23230at 1575.303 kb on + strand, within ABZR87_RS23230at 1575.303 kb on + strand, within ABZR87_RS23230at 1575.304 kb on - strand, within ABZR87_RS23230at 1575.304 kb on - strand, within ABZR87_RS23230

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,572,367 + ABZR87_RS23220 0.39 -0.7
1,572,367 + ABZR87_RS23220 0.39 -0.7
1,572,367 + ABZR87_RS23220 0.39 -1.0
1,572,368 - ABZR87_RS23220 0.39 -1.2
1,573,099 + ABZR87_RS23220 0.86 -1.6
1,573,108 + ABZR87_RS23220 0.87 +0.3
1,573,108 + ABZR87_RS23220 0.87 -1.1
1,573,108 + ABZR87_RS23220 0.87 +0.1
1,573,108 + ABZR87_RS23220 0.87 -0.9
1,573,108 + ABZR87_RS23220 0.87 -0.9
1,573,108 + ABZR87_RS23220 0.87 -2.4
1,573,109 - ABZR87_RS23220 0.87 -1.8
1,573,109 - ABZR87_RS23220 0.87 +0.8
1,573,109 - ABZR87_RS23220 0.87 -1.9
1,573,109 - ABZR87_RS23220 0.87 -0.4
1,573,109 - ABZR87_RS23220 0.87 -0.4
1,573,414 + -0.7
1,573,465 + ABZR87_RS23225 0.12 -2.2
1,573,465 + ABZR87_RS23225 0.12 -1.9
1,573,466 - ABZR87_RS23225 0.12 -2.3
1,574,104 + ABZR87_RS23225 0.65 -1.6
1,574,104 + ABZR87_RS23225 0.65 -2.1
1,574,104 + ABZR87_RS23225 0.65 +0.2
1,574,104 + ABZR87_RS23225 0.65 -0.9
1,574,140 + ABZR87_RS23225 0.68 +0.2
1,574,140 + ABZR87_RS23225 0.68 +0.2
1,574,140 + ABZR87_RS23225 0.68 -1.5
1,574,140 + ABZR87_RS23225 0.68 -2.2
1,574,368 + ABZR87_RS23225 0.87 +0.9
1,574,368 + ABZR87_RS23225 0.87 -2.0
1,574,369 - ABZR87_RS23225 0.87 -0.2
1,574,667 + -1.8
1,574,667 + -0.6
1,574,667 + +0.1
1,574,668 - -0.8
1,574,959 - ABZR87_RS23230 0.32 -1.2
1,575,048 + ABZR87_RS23230 0.42 -0.7
1,575,048 + ABZR87_RS23230 0.42 +0.0
1,575,048 + ABZR87_RS23230 0.42 -0.4
1,575,048 + ABZR87_RS23230 0.42 +0.1
1,575,048 + ABZR87_RS23230 0.42 -0.3
1,575,048 + ABZR87_RS23230 0.42 +0.8
1,575,048 + ABZR87_RS23230 0.42 -0.5
1,575,049 - ABZR87_RS23230 0.42 -0.9
1,575,049 - ABZR87_RS23230 0.42 -0.1
1,575,049 - ABZR87_RS23230 0.42 -0.4
1,575,049 - ABZR87_RS23230 0.42 +0.1
1,575,049 - ABZR87_RS23230 0.42 -1.5
1,575,133 - ABZR87_RS23230 0.51 -0.3
1,575,150 + ABZR87_RS23230 0.53 -0.8
1,575,151 - ABZR87_RS23230 0.53 -0.5
1,575,303 + ABZR87_RS23230 0.70 -0.4
1,575,303 + ABZR87_RS23230 0.70 -3.1
1,575,303 + ABZR87_RS23230 0.70 -0.7
1,575,304 - ABZR87_RS23230 0.70 +0.1
1,575,304 - ABZR87_RS23230 0.70 -0.4

Or see this region's nucleotide sequence