Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23150

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23145 and ABZR87_RS23150 are separated by 77 nucleotidesABZR87_RS23150 and ABZR87_RS23155 are separated by 256 nucleotides ABZR87_RS23145: ABZR87_RS23145 - FAD-binding oxidoreductase, at 1,555,220 to 1,556,473 _RS23145 ABZR87_RS23150: ABZR87_RS23150 - glutathione S-transferase family protein, at 1,556,551 to 1,557,210 _RS23150 ABZR87_RS23155: ABZR87_RS23155 - polyhydroxyalkanoate depolymerase, at 1,557,467 to 1,558,822 _RS23155 Position (kb) 1556 1557 1558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1555.790 kb on + strand, within ABZR87_RS23145at 1555.792 kb on + strand, within ABZR87_RS23145at 1555.793 kb on - strand, within ABZR87_RS23145at 1555.793 kb on - strand, within ABZR87_RS23145at 1555.838 kb on + strand, within ABZR87_RS23145at 1555.847 kb on + strand, within ABZR87_RS23145at 1555.848 kb on - strand, within ABZR87_RS23145at 1555.848 kb on - strand, within ABZR87_RS23145at 1556.006 kb on + strand, within ABZR87_RS23145at 1556.036 kb on + strand, within ABZR87_RS23145at 1556.037 kb on - strand, within ABZR87_RS23145at 1556.048 kb on + strand, within ABZR87_RS23145at 1556.105 kb on + strand, within ABZR87_RS23145at 1556.106 kb on - strand, within ABZR87_RS23145at 1556.106 kb on - strand, within ABZR87_RS23145at 1556.471 kb on + strandat 1556.471 kb on + strandat 1556.472 kb on - strandat 1556.472 kb on - strandat 1556.472 kb on - strandat 1556.475 kb on + strandat 1556.501 kb on - strandat 1556.501 kb on - strandat 1556.501 kb on - strandat 1556.562 kb on + strandat 1556.648 kb on + strand, within ABZR87_RS23150at 1556.649 kb on - strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.681 kb on + strand, within ABZR87_RS23150at 1556.682 kb on - strand, within ABZR87_RS23150at 1556.682 kb on - strand, within ABZR87_RS23150at 1556.682 kb on - strand, within ABZR87_RS23150at 1556.712 kb on - strand, within ABZR87_RS23150at 1556.759 kb on + strand, within ABZR87_RS23150at 1557.211 kb on - strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.407 kb on + strandat 1557.408 kb on - strandat 1557.408 kb on - strandat 1557.408 kb on - strandat 1557.408 kb on - strandat 1557.491 kb on + strandat 1557.863 kb on + strand, within ABZR87_RS23155at 1557.864 kb on - strand, within ABZR87_RS23155at 1557.864 kb on - strand, within ABZR87_RS23155at 1557.864 kb on - strand, within ABZR87_RS23155at 1557.929 kb on + strand, within ABZR87_RS23155at 1557.929 kb on + strand, within ABZR87_RS23155at 1557.930 kb on - strand, within ABZR87_RS23155at 1557.930 kb on - strand, within ABZR87_RS23155at 1557.930 kb on - strand, within ABZR87_RS23155at 1557.930 kb on - strand, within ABZR87_RS23155at 1557.981 kb on + strand, within ABZR87_RS23155at 1557.982 kb on - strand, within ABZR87_RS23155

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,555,790 + ABZR87_RS23145 0.45 +0.9
1,555,792 + ABZR87_RS23145 0.46 +1.0
1,555,793 - ABZR87_RS23145 0.46 +1.1
1,555,793 - ABZR87_RS23145 0.46 -1.9
1,555,838 + ABZR87_RS23145 0.49 -1.0
1,555,847 + ABZR87_RS23145 0.50 +0.2
1,555,848 - ABZR87_RS23145 0.50 +0.1
1,555,848 - ABZR87_RS23145 0.50 +0.6
1,556,006 + ABZR87_RS23145 0.63 -0.1
1,556,036 + ABZR87_RS23145 0.65 -0.0
1,556,037 - ABZR87_RS23145 0.65 +0.3
1,556,048 + ABZR87_RS23145 0.66 -2.1
1,556,105 + ABZR87_RS23145 0.71 -1.1
1,556,106 - ABZR87_RS23145 0.71 +0.6
1,556,106 - ABZR87_RS23145 0.71 +1.2
1,556,471 + -1.4
1,556,471 + -0.1
1,556,472 - -0.7
1,556,472 - -1.6
1,556,472 - -0.0
1,556,475 + +0.0
1,556,501 - +0.3
1,556,501 - +0.1
1,556,501 - -0.3
1,556,562 + +0.5
1,556,648 + ABZR87_RS23150 0.15 +0.5
1,556,649 - ABZR87_RS23150 0.15 +0.6
1,556,681 + ABZR87_RS23150 0.20 +0.6
1,556,681 + ABZR87_RS23150 0.20 -0.5
1,556,681 + ABZR87_RS23150 0.20 -0.5
1,556,681 + ABZR87_RS23150 0.20 +1.5
1,556,682 - ABZR87_RS23150 0.20 +0.9
1,556,682 - ABZR87_RS23150 0.20 -1.4
1,556,682 - ABZR87_RS23150 0.20 -3.1
1,556,712 - ABZR87_RS23150 0.24 -0.1
1,556,759 + ABZR87_RS23150 0.32 +1.5
1,557,211 - -1.0
1,557,407 + +0.5
1,557,407 + -0.2
1,557,407 + -0.5
1,557,407 + +0.1
1,557,407 + -0.6
1,557,408 - -0.3
1,557,408 - +0.5
1,557,408 - -1.3
1,557,408 - -0.4
1,557,491 + -1.1
1,557,863 + ABZR87_RS23155 0.29 -1.8
1,557,864 - ABZR87_RS23155 0.29 +0.6
1,557,864 - ABZR87_RS23155 0.29 -0.9
1,557,864 - ABZR87_RS23155 0.29 -1.0
1,557,929 + ABZR87_RS23155 0.34 -0.8
1,557,929 + ABZR87_RS23155 0.34 -2.2
1,557,930 - ABZR87_RS23155 0.34 -1.3
1,557,930 - ABZR87_RS23155 0.34 +0.1
1,557,930 - ABZR87_RS23155 0.34 -1.0
1,557,930 - ABZR87_RS23155 0.34 -0.3
1,557,981 + ABZR87_RS23155 0.38 -0.0
1,557,982 - ABZR87_RS23155 0.38 +2.0

Or see this region's nucleotide sequence