Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21300

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21295 and ABZR87_RS21300 are separated by 0 nucleotidesABZR87_RS21300 and ABZR87_RS21305 are separated by 67 nucleotidesABZR87_RS21305 and ABZR87_RS21310 overlap by 1 nucleotides ABZR87_RS21295: ABZR87_RS21295 - LLM class flavin-dependent oxidoreductase, at 1,156,027 to 1,157,412 _RS21295 ABZR87_RS21300: ABZR87_RS21300 - hypothetical protein, at 1,157,413 to 1,157,697 _RS21300 ABZR87_RS21305: ABZR87_RS21305 - transglutaminase family protein, at 1,157,765 to 1,158,667 _RS21305 ABZR87_RS21310: ABZR87_RS21310 - circularly permuted type 2 ATP-grasp protein, at 1,158,667 to 1,161,255 _RS21310 Position (kb) 1157 1158Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1156.534 kb on + strand, within ABZR87_RS21295at 1156.534 kb on + strand, within ABZR87_RS21295at 1156.534 kb on + strand, within ABZR87_RS21295at 1156.534 kb on + strand, within ABZR87_RS21295at 1156.534 kb on + strand, within ABZR87_RS21295at 1156.645 kb on + strand, within ABZR87_RS21295at 1156.933 kb on + strand, within ABZR87_RS21295at 1156.933 kb on + strand, within ABZR87_RS21295at 1156.934 kb on - strand, within ABZR87_RS21295at 1156.988 kb on - strand, within ABZR87_RS21295at 1156.996 kb on + strand, within ABZR87_RS21295at 1156.997 kb on - strand, within ABZR87_RS21295at 1156.997 kb on - strand, within ABZR87_RS21295at 1157.125 kb on + strand, within ABZR87_RS21295at 1157.236 kb on + strand, within ABZR87_RS21295at 1157.237 kb on - strand, within ABZR87_RS21295at 1157.287 kb on + strandat 1157.288 kb on - strandat 1157.288 kb on - strandat 1157.288 kb on - strandat 1157.288 kb on - strandat 1157.414 kb on + strandat 1157.414 kb on + strandat 1157.415 kb on - strandat 1157.471 kb on + strand, within ABZR87_RS21300at 1157.471 kb on + strand, within ABZR87_RS21300at 1157.471 kb on + strand, within ABZR87_RS21300at 1157.472 kb on - strand, within ABZR87_RS21300at 1157.472 kb on - strand, within ABZR87_RS21300at 1157.472 kb on - strand, within ABZR87_RS21300at 1157.500 kb on - strand, within ABZR87_RS21300at 1157.613 kb on - strand, within ABZR87_RS21300at 1157.760 kb on - strandat 1157.862 kb on + strand, within ABZR87_RS21305at 1157.863 kb on - strand, within ABZR87_RS21305at 1157.863 kb on - strand, within ABZR87_RS21305at 1157.863 kb on - strand, within ABZR87_RS21305at 1158.039 kb on + strand, within ABZR87_RS21305at 1158.039 kb on + strand, within ABZR87_RS21305at 1158.039 kb on + strand, within ABZR87_RS21305at 1158.140 kb on - strand, within ABZR87_RS21305at 1158.165 kb on + strand, within ABZR87_RS21305at 1158.166 kb on - strand, within ABZR87_RS21305at 1158.312 kb on + strand, within ABZR87_RS21305at 1158.312 kb on + strand, within ABZR87_RS21305at 1158.313 kb on - strand, within ABZR87_RS21305at 1158.465 kb on + strand, within ABZR87_RS21305at 1158.465 kb on + strand, within ABZR87_RS21305at 1158.466 kb on - strand, within ABZR87_RS21305at 1158.507 kb on + strand, within ABZR87_RS21305at 1158.507 kb on + strand, within ABZR87_RS21305at 1158.507 kb on + strand, within ABZR87_RS21305at 1158.508 kb on - strand, within ABZR87_RS21305at 1158.615 kb on + strandat 1158.615 kb on + strandat 1158.621 kb on + strandat 1158.621 kb on + strandat 1158.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,156,534 + ABZR87_RS21295 0.37 +0.4
1,156,534 + ABZR87_RS21295 0.37 +0.1
1,156,534 + ABZR87_RS21295 0.37 -0.9
1,156,534 + ABZR87_RS21295 0.37 -2.1
1,156,534 + ABZR87_RS21295 0.37 -1.3
1,156,645 + ABZR87_RS21295 0.45 -0.1
1,156,933 + ABZR87_RS21295 0.65 +4.6
1,156,933 + ABZR87_RS21295 0.65 -1.8
1,156,934 - ABZR87_RS21295 0.65 +1.3
1,156,988 - ABZR87_RS21295 0.69 -1.2
1,156,996 + ABZR87_RS21295 0.70 -0.2
1,156,997 - ABZR87_RS21295 0.70 -0.9
1,156,997 - ABZR87_RS21295 0.70 +0.9
1,157,125 + ABZR87_RS21295 0.79 +0.9
1,157,236 + ABZR87_RS21295 0.87 +0.6
1,157,237 - ABZR87_RS21295 0.87 -0.9
1,157,287 + -0.7
1,157,288 - -1.2
1,157,288 - -1.2
1,157,288 - -0.9
1,157,288 - +0.1
1,157,414 + +0.0
1,157,414 + -0.1
1,157,415 - -1.1
1,157,471 + ABZR87_RS21300 0.20 -2.6
1,157,471 + ABZR87_RS21300 0.20 -1.6
1,157,471 + ABZR87_RS21300 0.20 +0.4
1,157,472 - ABZR87_RS21300 0.21 -0.5
1,157,472 - ABZR87_RS21300 0.21 -2.3
1,157,472 - ABZR87_RS21300 0.21 +0.1
1,157,500 - ABZR87_RS21300 0.31 +0.4
1,157,613 - ABZR87_RS21300 0.70 -0.5
1,157,760 - -0.0
1,157,862 + ABZR87_RS21305 0.11 -0.8
1,157,863 - ABZR87_RS21305 0.11 -1.7
1,157,863 - ABZR87_RS21305 0.11 -1.0
1,157,863 - ABZR87_RS21305 0.11 -0.0
1,158,039 + ABZR87_RS21305 0.30 +1.3
1,158,039 + ABZR87_RS21305 0.30 -1.6
1,158,039 + ABZR87_RS21305 0.30 +1.2
1,158,140 - ABZR87_RS21305 0.42 -1.0
1,158,165 + ABZR87_RS21305 0.44 +0.9
1,158,166 - ABZR87_RS21305 0.44 -0.0
1,158,312 + ABZR87_RS21305 0.61 -0.3
1,158,312 + ABZR87_RS21305 0.61 +1.8
1,158,313 - ABZR87_RS21305 0.61 +0.7
1,158,465 + ABZR87_RS21305 0.78 -1.1
1,158,465 + ABZR87_RS21305 0.78 -0.0
1,158,466 - ABZR87_RS21305 0.78 +0.7
1,158,507 + ABZR87_RS21305 0.82 +1.3
1,158,507 + ABZR87_RS21305 0.82 +1.4
1,158,507 + ABZR87_RS21305 0.82 -2.2
1,158,508 - ABZR87_RS21305 0.82 -0.6
1,158,615 + +0.8
1,158,615 + +0.1
1,158,621 + +1.4
1,158,621 + +1.6
1,158,622 - -1.4

Or see this region's nucleotide sequence