Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21295 and ABZR87_RS21300 are separated by 0 nucleotides ABZR87_RS21300 and ABZR87_RS21305 are separated by 67 nucleotides ABZR87_RS21305 and ABZR87_RS21310 overlap by 1 nucleotides
ABZR87_RS21295: ABZR87_RS21295 - LLM class flavin-dependent oxidoreductase, at 1,156,027 to 1,157,412
_RS21295
ABZR87_RS21300: ABZR87_RS21300 - hypothetical protein, at 1,157,413 to 1,157,697
_RS21300
ABZR87_RS21305: ABZR87_RS21305 - transglutaminase family protein, at 1,157,765 to 1,158,667
_RS21305
ABZR87_RS21310: ABZR87_RS21310 - circularly permuted type 2 ATP-grasp protein, at 1,158,667 to 1,161,255
_RS21310
Position (kb)
1157
1158 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1156.534 kb on + strand, within ABZR87_RS21295 at 1156.534 kb on + strand, within ABZR87_RS21295 at 1156.534 kb on + strand, within ABZR87_RS21295 at 1156.534 kb on + strand, within ABZR87_RS21295 at 1156.534 kb on + strand, within ABZR87_RS21295 at 1156.645 kb on + strand, within ABZR87_RS21295 at 1156.933 kb on + strand, within ABZR87_RS21295 at 1156.933 kb on + strand, within ABZR87_RS21295 at 1156.934 kb on - strand, within ABZR87_RS21295 at 1156.988 kb on - strand, within ABZR87_RS21295 at 1156.996 kb on + strand, within ABZR87_RS21295 at 1156.997 kb on - strand, within ABZR87_RS21295 at 1156.997 kb on - strand, within ABZR87_RS21295 at 1157.125 kb on + strand, within ABZR87_RS21295 at 1157.236 kb on + strand, within ABZR87_RS21295 at 1157.237 kb on - strand, within ABZR87_RS21295 at 1157.287 kb on + strand at 1157.288 kb on - strand at 1157.288 kb on - strand at 1157.288 kb on - strand at 1157.288 kb on - strand at 1157.414 kb on + strand at 1157.414 kb on + strand at 1157.415 kb on - strand at 1157.471 kb on + strand, within ABZR87_RS21300 at 1157.471 kb on + strand, within ABZR87_RS21300 at 1157.471 kb on + strand, within ABZR87_RS21300 at 1157.472 kb on - strand, within ABZR87_RS21300 at 1157.472 kb on - strand, within ABZR87_RS21300 at 1157.472 kb on - strand, within ABZR87_RS21300 at 1157.500 kb on - strand, within ABZR87_RS21300 at 1157.613 kb on - strand, within ABZR87_RS21300 at 1157.760 kb on - strand at 1157.862 kb on + strand, within ABZR87_RS21305 at 1157.863 kb on - strand, within ABZR87_RS21305 at 1157.863 kb on - strand, within ABZR87_RS21305 at 1157.863 kb on - strand, within ABZR87_RS21305 at 1158.039 kb on + strand, within ABZR87_RS21305 at 1158.039 kb on + strand, within ABZR87_RS21305 at 1158.039 kb on + strand, within ABZR87_RS21305 at 1158.140 kb on - strand, within ABZR87_RS21305 at 1158.165 kb on + strand, within ABZR87_RS21305 at 1158.166 kb on - strand, within ABZR87_RS21305 at 1158.312 kb on + strand, within ABZR87_RS21305 at 1158.312 kb on + strand, within ABZR87_RS21305 at 1158.313 kb on - strand, within ABZR87_RS21305 at 1158.465 kb on + strand, within ABZR87_RS21305 at 1158.465 kb on + strand, within ABZR87_RS21305 at 1158.466 kb on - strand, within ABZR87_RS21305 at 1158.507 kb on + strand, within ABZR87_RS21305 at 1158.507 kb on + strand, within ABZR87_RS21305 at 1158.507 kb on + strand, within ABZR87_RS21305 at 1158.508 kb on - strand, within ABZR87_RS21305 at 1158.615 kb on + strand at 1158.615 kb on + strand at 1158.621 kb on + strand at 1158.621 kb on + strand at 1158.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,156,534 + ABZR87_RS21295 0.37 +0.4 1,156,534 + ABZR87_RS21295 0.37 +0.1 1,156,534 + ABZR87_RS21295 0.37 -0.9 1,156,534 + ABZR87_RS21295 0.37 -2.1 1,156,534 + ABZR87_RS21295 0.37 -1.3 1,156,645 + ABZR87_RS21295 0.45 -0.1 1,156,933 + ABZR87_RS21295 0.65 +4.6 1,156,933 + ABZR87_RS21295 0.65 -1.8 1,156,934 - ABZR87_RS21295 0.65 +1.3 1,156,988 - ABZR87_RS21295 0.69 -1.2 1,156,996 + ABZR87_RS21295 0.70 -0.2 1,156,997 - ABZR87_RS21295 0.70 -0.9 1,156,997 - ABZR87_RS21295 0.70 +0.9 1,157,125 + ABZR87_RS21295 0.79 +0.9 1,157,236 + ABZR87_RS21295 0.87 +0.6 1,157,237 - ABZR87_RS21295 0.87 -0.9 1,157,287 + -0.7 1,157,288 - -1.2 1,157,288 - -1.2 1,157,288 - -0.9 1,157,288 - +0.1 1,157,414 + +0.0 1,157,414 + -0.1 1,157,415 - -1.1 1,157,471 + ABZR87_RS21300 0.20 -2.6 1,157,471 + ABZR87_RS21300 0.20 -1.6 1,157,471 + ABZR87_RS21300 0.20 +0.4 1,157,472 - ABZR87_RS21300 0.21 -0.5 1,157,472 - ABZR87_RS21300 0.21 -2.3 1,157,472 - ABZR87_RS21300 0.21 +0.1 1,157,500 - ABZR87_RS21300 0.31 +0.4 1,157,613 - ABZR87_RS21300 0.70 -0.5 1,157,760 - -0.0 1,157,862 + ABZR87_RS21305 0.11 -0.8 1,157,863 - ABZR87_RS21305 0.11 -1.7 1,157,863 - ABZR87_RS21305 0.11 -1.0 1,157,863 - ABZR87_RS21305 0.11 -0.0 1,158,039 + ABZR87_RS21305 0.30 +1.3 1,158,039 + ABZR87_RS21305 0.30 -1.6 1,158,039 + ABZR87_RS21305 0.30 +1.2 1,158,140 - ABZR87_RS21305 0.42 -1.0 1,158,165 + ABZR87_RS21305 0.44 +0.9 1,158,166 - ABZR87_RS21305 0.44 -0.0 1,158,312 + ABZR87_RS21305 0.61 -0.3 1,158,312 + ABZR87_RS21305 0.61 +1.8 1,158,313 - ABZR87_RS21305 0.61 +0.7 1,158,465 + ABZR87_RS21305 0.78 -1.1 1,158,465 + ABZR87_RS21305 0.78 -0.0 1,158,466 - ABZR87_RS21305 0.78 +0.7 1,158,507 + ABZR87_RS21305 0.82 +1.3 1,158,507 + ABZR87_RS21305 0.82 +1.4 1,158,507 + ABZR87_RS21305 0.82 -2.2 1,158,508 - ABZR87_RS21305 0.82 -0.6 1,158,615 + +0.8 1,158,615 + +0.1 1,158,621 + +1.4 1,158,621 + +1.6 1,158,622 - -1.4
Or see this region's nucleotide sequence