Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20365 and ABZR87_RS20370 are separated by 14 nucleotides ABZR87_RS20370 and ABZR87_RS20375 overlap by 7 nucleotides
ABZR87_RS20365: ABZR87_RS20365 - cytochrome c, at 957,295 to 958,461
_RS20365
ABZR87_RS20370: ABZR87_RS20370 - ABC transporter ATP-binding protein, at 958,476 to 959,273
_RS20370
ABZR87_RS20375: ABZR87_RS20375 - ABC transporter permease subunit, at 959,267 to 960,304
_RS20375
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 958.052 kb on + strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.477 kb on + strand at 958.477 kb on + strand at 958.478 kb on - strand at 958.478 kb on - strand at 958.966 kb on + strand, within ABZR87_RS20370 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.373 kb on + strand, within ABZR87_RS20375 at 959.374 kb on - strand, within ABZR87_RS20375 at 959.374 kb on - strand, within ABZR87_RS20375 at 959.386 kb on - strand, within ABZR87_RS20375 at 959.386 kb on - strand, within ABZR87_RS20375 at 959.386 kb on - strand, within ABZR87_RS20375 at 959.415 kb on + strand, within ABZR87_RS20375 at 959.492 kb on + strand, within ABZR87_RS20375 at 959.493 kb on - strand, within ABZR87_RS20375 at 959.493 kb on - strand, within ABZR87_RS20375 at 959.583 kb on + strand, within ABZR87_RS20375 at 959.584 kb on - strand, within ABZR87_RS20375 at 959.586 kb on + strand, within ABZR87_RS20375 at 959.676 kb on + strand, within ABZR87_RS20375 at 959.694 kb on + strand, within ABZR87_RS20375 at 959.695 kb on - strand, within ABZR87_RS20375 at 959.695 kb on - strand, within ABZR87_RS20375 at 959.764 kb on - strand, within ABZR87_RS20375 at 959.854 kb on + strand, within ABZR87_RS20375 at 959.854 kb on + strand, within ABZR87_RS20375 at 959.895 kb on + strand, within ABZR87_RS20375 at 959.895 kb on + strand, within ABZR87_RS20375 at 959.895 kb on + strand, within ABZR87_RS20375 at 959.896 kb on - strand, within ABZR87_RS20375 at 959.896 kb on - strand, within ABZR87_RS20375
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 958,052 + ABZR87_RS20365 0.65 +1.0 958,053 - ABZR87_RS20365 0.65 +0.1 958,053 - ABZR87_RS20365 0.65 -1.4 958,053 - ABZR87_RS20365 0.65 -0.3 958,477 + -0.9 958,477 + +0.0 958,478 - +0.1 958,478 - -1.6 958,966 + ABZR87_RS20370 0.61 -1.9 959,373 + ABZR87_RS20375 0.10 +0.5 959,373 + ABZR87_RS20375 0.10 -0.3 959,373 + ABZR87_RS20375 0.10 -0.4 959,373 + ABZR87_RS20375 0.10 -1.2 959,373 + ABZR87_RS20375 0.10 -0.6 959,374 - ABZR87_RS20375 0.10 +0.5 959,374 - ABZR87_RS20375 0.10 +0.9 959,386 - ABZR87_RS20375 0.11 +1.5 959,386 - ABZR87_RS20375 0.11 -0.7 959,386 - ABZR87_RS20375 0.11 -0.0 959,415 + ABZR87_RS20375 0.14 +0.9 959,492 + ABZR87_RS20375 0.22 +0.0 959,493 - ABZR87_RS20375 0.22 +0.7 959,493 - ABZR87_RS20375 0.22 -0.5 959,583 + ABZR87_RS20375 0.30 -2.1 959,584 - ABZR87_RS20375 0.31 -1.3 959,586 + ABZR87_RS20375 0.31 +0.5 959,676 + ABZR87_RS20375 0.39 -0.2 959,694 + ABZR87_RS20375 0.41 +2.3 959,695 - ABZR87_RS20375 0.41 -0.7 959,695 - ABZR87_RS20375 0.41 -0.8 959,764 - ABZR87_RS20375 0.48 +2.4 959,854 + ABZR87_RS20375 0.57 -0.9 959,854 + ABZR87_RS20375 0.57 -0.2 959,895 + ABZR87_RS20375 0.61 -1.1 959,895 + ABZR87_RS20375 0.61 -1.2 959,895 + ABZR87_RS20375 0.61 -0.3 959,896 - ABZR87_RS20375 0.61 +0.1 959,896 - ABZR87_RS20375 0.61 +2.3
Or see this region's nucleotide sequence