Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20155

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20150 and ABZR87_RS20155 overlap by 4 nucleotidesABZR87_RS20155 and ABZR87_RS20160 are separated by 2 nucleotidesABZR87_RS20160 and ABZR87_RS20165 are separated by 92 nucleotides ABZR87_RS20150: ABZR87_RS20150 - type VI secretion system membrane subunit TssM, at 901,774 to 905,724 _RS20150 ABZR87_RS20155: ABZR87_RS20155 - type VI secretion system-associated protein TagF, at 905,721 to 906,716 _RS20155 ABZR87_RS20160: ABZR87_RS20160 - OmpA family protein, at 906,719 to 907,537 _RS20160 ABZR87_RS20165: ABZR87_RS20165 - TIGR04222 domain-containing membrane protein, at 907,630 to 909,072 _RS20165 Position (kb) 905 906 907Strain fitness (log2 ratio) -2 -1 0 1 2 3at 904.732 kb on + strand, within ABZR87_RS20150at 904.732 kb on + strand, within ABZR87_RS20150at 904.732 kb on + strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.733 kb on - strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.736 kb on + strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.737 kb on - strand, within ABZR87_RS20150at 904.819 kb on + strand, within ABZR87_RS20150at 904.819 kb on + strand, within ABZR87_RS20150at 904.879 kb on + strand, within ABZR87_RS20150at 904.879 kb on + strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.880 kb on - strand, within ABZR87_RS20150at 904.912 kb on + strand, within ABZR87_RS20150at 904.912 kb on + strand, within ABZR87_RS20150at 904.913 kb on - strand, within ABZR87_RS20150at 904.913 kb on - strand, within ABZR87_RS20150at 904.913 kb on - strand, within ABZR87_RS20150at 905.224 kb on + strand, within ABZR87_RS20150at 905.225 kb on - strand, within ABZR87_RS20150at 905.225 kb on - strand, within ABZR87_RS20150at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.880 kb on + strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 905.881 kb on - strand, within ABZR87_RS20155at 906.387 kb on + strand, within ABZR87_RS20155at 906.388 kb on - strand, within ABZR87_RS20155at 906.558 kb on + strand, within ABZR87_RS20155at 906.558 kb on + strand, within ABZR87_RS20155at 906.559 kb on - strand, within ABZR87_RS20155at 906.621 kb on + strandat 906.621 kb on + strandat 906.622 kb on - strandat 906.645 kb on + strandat 906.686 kb on + strandat 906.788 kb on + strandat 906.788 kb on + strandat 906.789 kb on - strandat 906.789 kb on - strandat 906.921 kb on - strand, within ABZR87_RS20160at 907.142 kb on + strand, within ABZR87_RS20160at 907.142 kb on + strand, within ABZR87_RS20160at 907.142 kb on + strand, within ABZR87_RS20160at 907.142 kb on + strand, within ABZR87_RS20160at 907.142 kb on + strand, within ABZR87_RS20160at 907.403 kb on + strand, within ABZR87_RS20160at 907.403 kb on + strand, within ABZR87_RS20160at 907.404 kb on - strand, within ABZR87_RS20160at 907.531 kb on + strandat 907.603 kb on + strandat 907.603 kb on + strandat 907.603 kb on + strandat 907.676 kb on + strandat 907.677 kb on - strandat 907.677 kb on - strandat 907.677 kb on - strandat 907.678 kb on + strandat 907.678 kb on + strandat 907.678 kb on + strandat 907.678 kb on + strandat 907.679 kb on - strandat 907.679 kb on - strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.680 kb on + strandat 907.681 kb on - strandat 907.681 kb on - strandat 907.681 kb on - strandat 907.681 kb on - strandat 907.681 kb on - strandat 907.681 kb on - strandat 907.702 kb on + strandat 907.702 kb on + strandat 907.702 kb on + strandat 907.703 kb on - strandat 907.703 kb on - strandat 907.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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904,732 + ABZR87_RS20150 0.75 -0.6
904,732 + ABZR87_RS20150 0.75 -1.1
904,732 + ABZR87_RS20150 0.75 -0.4
904,733 - ABZR87_RS20150 0.75 +1.2
904,733 - ABZR87_RS20150 0.75 +0.3
904,733 - ABZR87_RS20150 0.75 -0.1
904,733 - ABZR87_RS20150 0.75 +0.7
904,733 - ABZR87_RS20150 0.75 -0.6
904,733 - ABZR87_RS20150 0.75 +0.5
904,736 + ABZR87_RS20150 0.75 +0.2
904,736 + ABZR87_RS20150 0.75 -1.0
904,736 + ABZR87_RS20150 0.75 -0.4
904,736 + ABZR87_RS20150 0.75 -1.2
904,736 + ABZR87_RS20150 0.75 +0.1
904,736 + ABZR87_RS20150 0.75 -0.3
904,737 - ABZR87_RS20150 0.75 +1.4
904,737 - ABZR87_RS20150 0.75 +0.6
904,737 - ABZR87_RS20150 0.75 -1.5
904,737 - ABZR87_RS20150 0.75 -0.0
904,737 - ABZR87_RS20150 0.75 -1.0
904,737 - ABZR87_RS20150 0.75 +0.9
904,737 - ABZR87_RS20150 0.75 -0.7
904,819 + ABZR87_RS20150 0.77 -1.0
904,819 + ABZR87_RS20150 0.77 -0.1
904,879 + ABZR87_RS20150 0.79 -0.2
904,879 + ABZR87_RS20150 0.79 -0.9
904,880 - ABZR87_RS20150 0.79 -1.2
904,880 - ABZR87_RS20150 0.79 +0.2
904,880 - ABZR87_RS20150 0.79 +1.2
904,880 - ABZR87_RS20150 0.79 -1.6
904,880 - ABZR87_RS20150 0.79 -0.1
904,912 + ABZR87_RS20150 0.79 -1.4
904,912 + ABZR87_RS20150 0.79 -0.5
904,913 - ABZR87_RS20150 0.79 -1.5
904,913 - ABZR87_RS20150 0.79 +0.2
904,913 - ABZR87_RS20150 0.79 -0.6
905,224 + ABZR87_RS20150 0.87 -1.0
905,225 - ABZR87_RS20150 0.87 -1.8
905,225 - ABZR87_RS20150 0.87 -1.7
905,880 + ABZR87_RS20155 0.16 +1.0
905,880 + ABZR87_RS20155 0.16 +1.2
905,880 + ABZR87_RS20155 0.16 +0.3
905,880 + ABZR87_RS20155 0.16 +0.1
905,880 + ABZR87_RS20155 0.16 -1.9
905,880 + ABZR87_RS20155 0.16 +3.3
905,881 - ABZR87_RS20155 0.16 -0.7
905,881 - ABZR87_RS20155 0.16 -1.1
905,881 - ABZR87_RS20155 0.16 +1.2
905,881 - ABZR87_RS20155 0.16 -1.4
905,881 - ABZR87_RS20155 0.16 -0.9
906,387 + ABZR87_RS20155 0.67 -1.0
906,388 - ABZR87_RS20155 0.67 -1.8
906,558 + ABZR87_RS20155 0.84 +2.7
906,558 + ABZR87_RS20155 0.84 -2.5
906,559 - ABZR87_RS20155 0.84 -0.4
906,621 + -2.4
906,621 + -0.8
906,622 - -0.2
906,645 + +0.4
906,686 + -0.9
906,788 + -0.7
906,788 + +0.8
906,789 - +1.0
906,789 - -0.5
906,921 - ABZR87_RS20160 0.25 -0.4
907,142 + ABZR87_RS20160 0.52 +0.1
907,142 + ABZR87_RS20160 0.52 -1.0
907,142 + ABZR87_RS20160 0.52 -0.2
907,142 + ABZR87_RS20160 0.52 -0.7
907,142 + ABZR87_RS20160 0.52 +0.3
907,403 + ABZR87_RS20160 0.84 -0.9
907,403 + ABZR87_RS20160 0.84 +0.8
907,404 - ABZR87_RS20160 0.84 +0.5
907,531 + +0.4
907,603 + -0.7
907,603 + +0.4
907,603 + -1.0
907,676 + -0.0
907,677 - +0.8
907,677 - -0.6
907,677 - -0.4
907,678 + +0.4
907,678 + -1.0
907,678 + -0.7
907,678 + -0.4
907,679 - -0.3
907,679 - +0.4
907,680 + -1.0
907,680 + +0.2
907,680 + +1.1
907,680 + +1.1
907,680 + -0.9
907,680 + -0.1
907,680 + +0.0
907,680 + -1.5
907,681 - -0.9
907,681 - +0.0
907,681 - -1.5
907,681 - +2.1
907,681 - +1.0
907,681 - -0.7
907,702 + -0.7
907,702 + +0.6
907,702 + -0.3
907,703 - -0.1
907,703 - -0.9
907,703 - +1.3

Or see this region's nucleotide sequence