Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19965 and ABZR87_RS19970 are separated by 299 nucleotides ABZR87_RS19970 and ABZR87_RS19975 are separated by 37 nucleotides ABZR87_RS19975 and ABZR87_RS19980 are separated by 10 nucleotides ABZR87_RS19980 and ABZR87_RS19985 are separated by 29 nucleotides
ABZR87_RS19965: ABZR87_RS19965 - efflux RND transporter periplasmic adaptor subunit, at 857,933 to 859,018
_RS19965
ABZR87_RS19970: ABZR87_RS19970 - hypothetical protein, at 859,318 to 859,818
_RS19970
ABZR87_RS19975: ABZR87_RS19975 - thymidine phosphorylase family protein, at 859,856 to 861,403
_RS19975
ABZR87_RS19980: ABZR87_RS19980 - DUF1488 domain-containing protein, at 861,414 to 861,692
_RS19980
ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663
_RS19985
Position (kb) 859
860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 859.075 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.089 kb on + strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.090 kb on - strand at 859.312 kb on + strand at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.744 kb on + strand, within ABZR87_RS19970 at 859.799 kb on + strand at 859.800 kb on - strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.905 kb on + strand at 859.906 kb on - strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.917 kb on + strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.918 kb on - strand at 859.955 kb on + strand at 859.955 kb on + strand at 860.274 kb on - strand, within ABZR87_RS19975 at 860.977 kb on + strand, within ABZR87_RS19975 at 860.978 kb on - strand, within ABZR87_RS19975 at 860.991 kb on + strand, within ABZR87_RS19975 at 861.054 kb on + strand, within ABZR87_RS19975 at 861.055 kb on - strand, within ABZR87_RS19975 at 861.300 kb on + strand at 861.300 kb on + strand at 861.300 kb on + strand at 861.300 kb on + strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.301 kb on - strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.322 kb on + strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.323 kb on - strand at 861.410 kb on + strand at 861.410 kb on + strand at 861.410 kb on + strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.411 kb on - strand at 861.596 kb on - strand, within ABZR87_RS19980 at 861.656 kb on - strand, within ABZR87_RS19980 at 861.707 kb on - strand at 861.707 kb on - strand at 861.707 kb on - strand at 861.756 kb on - strand at 861.756 kb on - strand at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.873 kb on + strand, within ABZR87_RS19985 at 861.874 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 861.906 kb on - strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.001 kb on + strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.002 kb on - strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.005 kb on + strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.006 kb on - strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.033 kb on + strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.034 kb on - strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.160 kb on + strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.161 kb on - strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.224 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.360 kb on + strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.361 kb on - strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.362 kb on + strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.363 kb on - strand, within ABZR87_RS19985 at 862.372 kb on - strand, within ABZR87_RS19985
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 859,075 + +0.5 859,089 + +1.0 859,089 + +0.7 859,089 + +0.6 859,090 - -0.7 859,090 - -0.2 859,090 - -0.5 859,090 - +5.1 859,312 + +0.5 859,744 + ABZR87_RS19970 0.85 +0.4 859,744 + ABZR87_RS19970 0.85 +0.7 859,744 + ABZR87_RS19970 0.85 +0.4 859,799 + +1.1 859,800 - +1.0 859,905 + -0.4 859,905 + +0.7 859,905 + -1.1 859,905 + +1.8 859,905 + +0.8 859,905 + -1.9 859,906 - +2.4 859,917 + -2.1 859,917 + -0.1 859,917 + -0.0 859,918 - +1.3 859,918 - -0.5 859,918 - -2.4 859,918 - +1.1 859,955 + +0.3 859,955 + +0.9 860,274 - ABZR87_RS19975 0.27 +0.3 860,977 + ABZR87_RS19975 0.72 +0.2 860,978 - ABZR87_RS19975 0.72 -0.8 860,991 + ABZR87_RS19975 0.73 -1.8 861,054 + ABZR87_RS19975 0.77 -1.9 861,055 - ABZR87_RS19975 0.77 -1.9 861,300 + +1.6 861,300 + -2.0 861,300 + +0.3 861,300 + -1.6 861,301 - +0.7 861,301 - +0.7 861,301 - -1.4 861,301 - -0.2 861,301 - +0.4 861,301 - -0.4 861,301 - +0.2 861,301 - -1.2 861,301 - -1.3 861,322 + +1.7 861,322 + +0.7 861,322 + -1.1 861,322 + +1.5 861,322 + +0.4 861,323 - -0.4 861,323 - -0.7 861,323 - -0.4 861,323 - +1.6 861,323 - -0.3 861,323 - +0.8 861,323 - +1.0 861,410 + +1.0 861,410 + -1.0 861,410 + -1.7 861,411 - -0.2 861,411 - -2.0 861,411 - -2.1 861,411 - -0.6 861,411 - +0.1 861,411 - -0.5 861,411 - -0.1 861,596 - ABZR87_RS19980 0.65 +0.4 861,656 - ABZR87_RS19980 0.87 +0.5 861,707 - -0.2 861,707 - +0.4 861,707 - +0.0 861,756 - +0.3 861,756 - -1.0 861,873 + ABZR87_RS19985 0.16 +0.8 861,873 + ABZR87_RS19985 0.16 -3.2 861,873 + ABZR87_RS19985 0.16 -0.7 861,874 - ABZR87_RS19985 0.16 -0.4 861,906 - ABZR87_RS19985 0.20 -0.6 861,906 - ABZR87_RS19985 0.20 +0.5 862,001 + ABZR87_RS19985 0.30 -0.9 862,001 + ABZR87_RS19985 0.30 +0.4 862,001 + ABZR87_RS19985 0.30 +0.4 862,002 - ABZR87_RS19985 0.30 -0.5 862,002 - ABZR87_RS19985 0.30 -1.8 862,002 - ABZR87_RS19985 0.30 +0.3 862,005 + ABZR87_RS19985 0.30 -0.1 862,005 + ABZR87_RS19985 0.30 +1.4 862,005 + ABZR87_RS19985 0.30 -0.5 862,005 + ABZR87_RS19985 0.30 -2.3 862,005 + ABZR87_RS19985 0.30 -1.0 862,006 - ABZR87_RS19985 0.30 +0.1 862,006 - ABZR87_RS19985 0.30 +0.5 862,033 + ABZR87_RS19985 0.33 -0.3 862,033 + ABZR87_RS19985 0.33 +0.3 862,034 - ABZR87_RS19985 0.33 +0.1 862,034 - ABZR87_RS19985 0.33 -2.1 862,160 + ABZR87_RS19985 0.46 -0.2 862,160 + ABZR87_RS19985 0.46 +0.3 862,160 + ABZR87_RS19985 0.46 +0.3 862,160 + ABZR87_RS19985 0.46 -1.6 862,160 + ABZR87_RS19985 0.46 -0.7 862,160 + ABZR87_RS19985 0.46 -0.6 862,160 + ABZR87_RS19985 0.46 -0.2 862,161 - ABZR87_RS19985 0.47 +0.5 862,161 - ABZR87_RS19985 0.47 -0.1 862,224 + ABZR87_RS19985 0.53 -1.7 862,224 + ABZR87_RS19985 0.53 -0.1 862,224 + ABZR87_RS19985 0.53 -1.0 862,360 + ABZR87_RS19985 0.68 -0.6 862,360 + ABZR87_RS19985 0.68 +0.3 862,360 + ABZR87_RS19985 0.68 -0.2 862,360 + ABZR87_RS19985 0.68 +0.4 862,360 + ABZR87_RS19985 0.68 +1.9 862,361 - ABZR87_RS19985 0.68 +0.0 862,361 - ABZR87_RS19985 0.68 +0.4 862,361 - ABZR87_RS19985 0.68 +0.4 862,361 - ABZR87_RS19985 0.68 +1.4 862,361 - ABZR87_RS19985 0.68 +0.3 862,362 + ABZR87_RS19985 0.68 -0.3 862,362 + ABZR87_RS19985 0.68 -0.5 862,362 + ABZR87_RS19985 0.68 -0.1 862,362 + ABZR87_RS19985 0.68 +0.6 862,362 + ABZR87_RS19985 0.68 -1.8 862,362 + ABZR87_RS19985 0.68 -0.5 862,362 + ABZR87_RS19985 0.68 +0.3 862,363 - ABZR87_RS19985 0.68 -0.3 862,363 - ABZR87_RS19985 0.68 +0.0 862,363 - ABZR87_RS19985 0.68 -0.6 862,363 - ABZR87_RS19985 0.68 -2.3 862,363 - ABZR87_RS19985 0.68 +1.0 862,363 - ABZR87_RS19985 0.68 +1.8 862,363 - ABZR87_RS19985 0.68 -0.0 862,372 - ABZR87_RS19985 0.69 +1.1
Or see this region's nucleotide sequence