Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19905

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19900 and ABZR87_RS19905 are separated by 9 nucleotidesABZR87_RS19905 and ABZR87_RS19910 are separated by 9 nucleotides ABZR87_RS19900: ABZR87_RS19900 - ABC transporter permease, at 841,707 to 842,858 _RS19900 ABZR87_RS19905: ABZR87_RS19905 - hypothetical protein, at 842,868 to 843,380 _RS19905 ABZR87_RS19910: ABZR87_RS19910 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 843,390 to 844,835 _RS19910 Position (kb) 842 843 844Strain fitness (log2 ratio) -2 -1 0 1 2at 841.944 kb on + strand, within ABZR87_RS19900at 841.944 kb on + strand, within ABZR87_RS19900at 841.945 kb on - strand, within ABZR87_RS19900at 842.093 kb on + strand, within ABZR87_RS19900at 842.109 kb on - strand, within ABZR87_RS19900at 842.109 kb on - strand, within ABZR87_RS19900at 842.136 kb on + strand, within ABZR87_RS19900at 842.137 kb on - strand, within ABZR87_RS19900at 842.137 kb on - strand, within ABZR87_RS19900at 842.285 kb on + strand, within ABZR87_RS19900at 842.285 kb on + strand, within ABZR87_RS19900at 842.285 kb on + strand, within ABZR87_RS19900at 842.286 kb on - strand, within ABZR87_RS19900at 842.286 kb on - strand, within ABZR87_RS19900at 842.286 kb on - strand, within ABZR87_RS19900at 842.540 kb on + strand, within ABZR87_RS19900at 842.540 kb on + strand, within ABZR87_RS19900at 842.739 kb on + strand, within ABZR87_RS19900at 842.856 kb on + strandat 842.856 kb on + strandat 842.857 kb on - strandat 842.873 kb on + strandat 842.873 kb on + strandat 842.874 kb on - strandat 842.874 kb on - strandat 842.967 kb on + strand, within ABZR87_RS19905at 842.968 kb on - strand, within ABZR87_RS19905at 843.108 kb on + strand, within ABZR87_RS19905at 843.169 kb on - strand, within ABZR87_RS19905at 843.169 kb on - strand, within ABZR87_RS19905at 843.524 kb on + strandat 843.525 kb on - strandat 843.525 kb on - strandat 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.687 kb on + strand, within ABZR87_RS19910at 843.688 kb on - strand, within ABZR87_RS19910at 843.688 kb on - strand, within ABZR87_RS19910at 843.688 kb on - strand, within ABZR87_RS19910at 843.806 kb on + strand, within ABZR87_RS19910at 843.806 kb on + strand, within ABZR87_RS19910at 843.807 kb on - strand, within ABZR87_RS19910at 843.957 kb on - strand, within ABZR87_RS19910at 844.217 kb on + strand, within ABZR87_RS19910at 844.218 kb on - strand, within ABZR87_RS19910at 844.266 kb on - strand, within ABZR87_RS19910

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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841,944 + ABZR87_RS19900 0.21 +0.6
841,944 + ABZR87_RS19900 0.21 -0.3
841,945 - ABZR87_RS19900 0.21 +0.5
842,093 + ABZR87_RS19900 0.34 -0.4
842,109 - ABZR87_RS19900 0.35 +0.0
842,109 - ABZR87_RS19900 0.35 -0.7
842,136 + ABZR87_RS19900 0.37 +0.2
842,137 - ABZR87_RS19900 0.37 +0.0
842,137 - ABZR87_RS19900 0.37 +0.8
842,285 + ABZR87_RS19900 0.50 -0.8
842,285 + ABZR87_RS19900 0.50 +0.5
842,285 + ABZR87_RS19900 0.50 -0.8
842,286 - ABZR87_RS19900 0.50 +2.0
842,286 - ABZR87_RS19900 0.50 -1.0
842,286 - ABZR87_RS19900 0.50 +1.1
842,540 + ABZR87_RS19900 0.72 +1.2
842,540 + ABZR87_RS19900 0.72 -0.7
842,739 + ABZR87_RS19900 0.90 -0.5
842,856 + -0.8
842,856 + +1.2
842,857 - -0.5
842,873 + -0.3
842,873 + -1.1
842,874 - -2.0
842,874 - -1.4
842,967 + ABZR87_RS19905 0.19 +1.9
842,968 - ABZR87_RS19905 0.19 -1.2
843,108 + ABZR87_RS19905 0.47 -2.0
843,169 - ABZR87_RS19905 0.59 -0.4
843,169 - ABZR87_RS19905 0.59 -1.1
843,524 + +0.4
843,525 - +0.5
843,525 - +1.1
843,687 + ABZR87_RS19910 0.21 +0.0
843,687 + ABZR87_RS19910 0.21 +0.7
843,687 + ABZR87_RS19910 0.21 +2.0
843,687 + ABZR87_RS19910 0.21 -1.1
843,687 + ABZR87_RS19910 0.21 +0.8
843,687 + ABZR87_RS19910 0.21 -1.5
843,687 + ABZR87_RS19910 0.21 -1.1
843,687 + ABZR87_RS19910 0.21 -0.5
843,688 - ABZR87_RS19910 0.21 -1.8
843,688 - ABZR87_RS19910 0.21 +0.1
843,688 - ABZR87_RS19910 0.21 -1.8
843,806 + ABZR87_RS19910 0.29 +0.5
843,806 + ABZR87_RS19910 0.29 -0.0
843,807 - ABZR87_RS19910 0.29 -0.1
843,957 - ABZR87_RS19910 0.39 -1.1
844,217 + ABZR87_RS19910 0.57 -1.4
844,218 - ABZR87_RS19910 0.57 -1.2
844,266 - ABZR87_RS19910 0.61 +1.5

Or see this region's nucleotide sequence