Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19865 and ABZR87_RS19870 overlap by 4 nucleotides ABZR87_RS19870 and ABZR87_RS19875 overlap by 4 nucleotides
ABZR87_RS19865: ABZR87_RS19865 - c-type cytochrome, at 830,420 to 831,271
_RS19865
ABZR87_RS19870: ABZR87_RS19870 - GMC family oxidoreductase, at 831,268 to 833,034
_RS19870
ABZR87_RS19875: ABZR87_RS19875 - gluconate 2-dehydrogenase subunit 3 family protein, at 833,031 to 833,900
_RS19875
Position (kb) 831
832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.290 kb on + strand at 830.291 kb on - strand at 830.347 kb on + strand at 830.347 kb on + strand at 830.377 kb on + strand at 830.421 kb on + strand at 830.469 kb on + strand at 830.469 kb on + strand at 830.469 kb on + strand at 830.470 kb on - strand at 830.764 kb on - strand, within ABZR87_RS19865 at 830.851 kb on - strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.874 kb on + strand, within ABZR87_RS19865 at 830.875 kb on - strand, within ABZR87_RS19865 at 831.115 kb on + strand, within ABZR87_RS19865 at 831.115 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.177 kb on + strand, within ABZR87_RS19865 at 831.178 kb on - strand, within ABZR87_RS19865 at 831.178 kb on - strand, within ABZR87_RS19865 at 831.228 kb on - strand at 831.271 kb on + strand at 831.271 kb on + strand at 831.272 kb on - strand at 831.272 kb on - strand at 831.299 kb on + strand at 831.300 kb on - strand at 831.362 kb on + strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.500 kb on + strand, within ABZR87_RS19870 at 831.500 kb on + strand, within ABZR87_RS19870 at 831.501 kb on - strand, within ABZR87_RS19870 at 831.516 kb on - strand, within ABZR87_RS19870 at 831.633 kb on - strand, within ABZR87_RS19870 at 831.633 kb on - strand, within ABZR87_RS19870 at 831.672 kb on - strand, within ABZR87_RS19870 at 831.693 kb on - strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.749 kb on + strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.750 kb on - strand, within ABZR87_RS19870 at 831.752 kb on + strand, within ABZR87_RS19870 at 831.752 kb on + strand, within ABZR87_RS19870 at 831.753 kb on - strand, within ABZR87_RS19870 at 831.854 kb on + strand, within ABZR87_RS19870 at 831.855 kb on - strand, within ABZR87_RS19870 at 832.008 kb on - strand, within ABZR87_RS19870 at 832.008 kb on - strand, within ABZR87_RS19870 at 832.008 kb on - strand, within ABZR87_RS19870 at 832.046 kb on + strand, within ABZR87_RS19870 at 832.046 kb on + strand, within ABZR87_RS19870 at 832.047 kb on - strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.325 kb on + strand, within ABZR87_RS19870 at 832.325 kb on + strand, within ABZR87_RS19870 at 832.326 kb on - strand, within ABZR87_RS19870 at 832.357 kb on - strand, within ABZR87_RS19870 at 832.365 kb on - strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.566 kb on - strand, within ABZR87_RS19870 at 832.583 kb on + strand, within ABZR87_RS19870 at 832.584 kb on - strand, within ABZR87_RS19870 at 832.584 kb on - strand, within ABZR87_RS19870 at 832.584 kb on - strand, within ABZR87_RS19870 at 832.601 kb on + strand, within ABZR87_RS19870 at 832.602 kb on - strand, within ABZR87_RS19870 at 832.602 kb on - strand, within ABZR87_RS19870 at 832.655 kb on + strand, within ABZR87_RS19870 at 832.656 kb on - strand, within ABZR87_RS19870 at 832.706 kb on + strand, within ABZR87_RS19870 at 832.862 kb on + strand at 833.073 kb on + strand at 833.073 kb on + strand at 833.074 kb on - strand at 833.081 kb on + strand at 833.081 kb on + strand at 833.082 kb on - strand at 833.082 kb on - strand at 833.082 kb on - strand at 833.185 kb on + strand, within ABZR87_RS19875 at 833.299 kb on + strand, within ABZR87_RS19875 at 833.300 kb on - strand, within ABZR87_RS19875 at 833.300 kb on - strand, within ABZR87_RS19875 at 833.441 kb on - strand, within ABZR87_RS19875 at 833.516 kb on - strand, within ABZR87_RS19875 at 833.558 kb on - strand, within ABZR87_RS19875 at 833.823 kb on + strand at 833.824 kb on - strand at 833.824 kb on - strand at 833.824 kb on - strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 830,290 + +0.9 830,290 + +0.8 830,290 + -0.4 830,290 + +0.0 830,290 + -0.5 830,291 - +0.9 830,347 + -0.8 830,347 + +0.6 830,377 + -0.9 830,421 + +1.9 830,469 + +0.7 830,469 + +0.4 830,469 + +0.8 830,470 - +0.0 830,764 - ABZR87_RS19865 0.40 -1.0 830,851 - ABZR87_RS19865 0.51 -0.4 830,874 + ABZR87_RS19865 0.53 +0.2 830,874 + ABZR87_RS19865 0.53 +0.0 830,874 + ABZR87_RS19865 0.53 -2.1 830,875 - ABZR87_RS19865 0.53 +0.2 831,115 + ABZR87_RS19865 0.82 -0.1 831,115 + ABZR87_RS19865 0.82 -0.1 831,177 + ABZR87_RS19865 0.89 +0.3 831,177 + ABZR87_RS19865 0.89 +0.3 831,177 + ABZR87_RS19865 0.89 +0.7 831,177 + ABZR87_RS19865 0.89 +0.3 831,177 + ABZR87_RS19865 0.89 -0.9 831,177 + ABZR87_RS19865 0.89 -0.6 831,178 - ABZR87_RS19865 0.89 -0.2 831,178 - ABZR87_RS19865 0.89 -1.7 831,228 - +0.3 831,271 + +0.9 831,271 + +1.3 831,272 - +0.2 831,272 - +0.2 831,299 + +0.5 831,300 - -0.8 831,362 + -2.9 831,363 - +2.0 831,363 - -1.1 831,500 + ABZR87_RS19870 0.13 -0.0 831,500 + ABZR87_RS19870 0.13 +0.1 831,501 - ABZR87_RS19870 0.13 +0.9 831,516 - ABZR87_RS19870 0.14 +2.6 831,633 - ABZR87_RS19870 0.21 -0.5 831,633 - ABZR87_RS19870 0.21 +0.6 831,672 - ABZR87_RS19870 0.23 +2.0 831,693 - ABZR87_RS19870 0.24 -0.5 831,749 + ABZR87_RS19870 0.27 +1.0 831,749 + ABZR87_RS19870 0.27 -1.8 831,749 + ABZR87_RS19870 0.27 +1.1 831,749 + ABZR87_RS19870 0.27 +0.5 831,749 + ABZR87_RS19870 0.27 -0.9 831,750 - ABZR87_RS19870 0.27 +0.0 831,750 - ABZR87_RS19870 0.27 -0.5 831,750 - ABZR87_RS19870 0.27 +1.7 831,750 - ABZR87_RS19870 0.27 -0.0 831,750 - ABZR87_RS19870 0.27 -0.8 831,750 - ABZR87_RS19870 0.27 -2.9 831,750 - ABZR87_RS19870 0.27 -1.7 831,750 - ABZR87_RS19870 0.27 -2.1 831,752 + ABZR87_RS19870 0.27 -1.0 831,752 + ABZR87_RS19870 0.27 +0.1 831,753 - ABZR87_RS19870 0.27 -1.2 831,854 + ABZR87_RS19870 0.33 -1.2 831,855 - ABZR87_RS19870 0.33 +0.4 832,008 - ABZR87_RS19870 0.42 -0.5 832,008 - ABZR87_RS19870 0.42 +0.0 832,008 - ABZR87_RS19870 0.42 +0.7 832,046 + ABZR87_RS19870 0.44 -0.2 832,046 + ABZR87_RS19870 0.44 -1.5 832,047 - ABZR87_RS19870 0.44 -1.3 832,157 + ABZR87_RS19870 0.50 +0.4 832,157 + ABZR87_RS19870 0.50 -0.5 832,157 + ABZR87_RS19870 0.50 -1.3 832,157 + ABZR87_RS19870 0.50 -0.4 832,158 - ABZR87_RS19870 0.50 +0.4 832,158 - ABZR87_RS19870 0.50 +0.0 832,158 - ABZR87_RS19870 0.50 -1.4 832,158 - ABZR87_RS19870 0.50 +0.7 832,325 + ABZR87_RS19870 0.60 -1.7 832,325 + ABZR87_RS19870 0.60 +0.3 832,326 - ABZR87_RS19870 0.60 -0.4 832,357 - ABZR87_RS19870 0.62 -1.4 832,365 - ABZR87_RS19870 0.62 +0.6 832,397 + ABZR87_RS19870 0.64 -0.1 832,397 + ABZR87_RS19870 0.64 -0.0 832,397 + ABZR87_RS19870 0.64 +0.0 832,397 + ABZR87_RS19870 0.64 -1.0 832,397 + ABZR87_RS19870 0.64 -1.2 832,397 + ABZR87_RS19870 0.64 -0.0 832,397 + ABZR87_RS19870 0.64 -0.6 832,398 - ABZR87_RS19870 0.64 +1.3 832,398 - ABZR87_RS19870 0.64 -1.2 832,398 - ABZR87_RS19870 0.64 -0.9 832,398 - ABZR87_RS19870 0.64 +0.1 832,398 - ABZR87_RS19870 0.64 -1.1 832,398 - ABZR87_RS19870 0.64 +0.3 832,398 - ABZR87_RS19870 0.64 -0.0 832,566 - ABZR87_RS19870 0.73 -0.3 832,583 + ABZR87_RS19870 0.74 +0.0 832,584 - ABZR87_RS19870 0.74 -0.5 832,584 - ABZR87_RS19870 0.74 -0.6 832,584 - ABZR87_RS19870 0.74 -1.7 832,601 + ABZR87_RS19870 0.75 +0.5 832,602 - ABZR87_RS19870 0.75 -2.6 832,602 - ABZR87_RS19870 0.75 +1.4 832,655 + ABZR87_RS19870 0.78 -2.1 832,656 - ABZR87_RS19870 0.79 -1.8 832,706 + ABZR87_RS19870 0.81 -1.9 832,862 + -1.5 833,073 + +0.1 833,073 + -1.2 833,074 - +0.7 833,081 + -1.3 833,081 + +0.1 833,082 - -0.0 833,082 - +1.2 833,082 - -0.6 833,185 + ABZR87_RS19875 0.18 +0.1 833,299 + ABZR87_RS19875 0.31 -1.9 833,300 - ABZR87_RS19875 0.31 +0.2 833,300 - ABZR87_RS19875 0.31 +0.4 833,441 - ABZR87_RS19875 0.47 -1.1 833,516 - ABZR87_RS19875 0.56 +0.3 833,558 - ABZR87_RS19875 0.61 -0.5 833,823 + -0.6 833,824 - -0.9 833,824 - -1.1 833,824 - -1.3 833,900 + +0.6 833,900 + -0.4 833,900 + -1.7 833,900 + +0.7 833,900 + +0.8 833,901 - +1.2 833,901 - +0.2 833,901 - -0.9 833,901 - -1.8 833,901 - -0.9
Or see this region's nucleotide sequence