Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19820 and ABZR87_RS19825 are separated by 138 nucleotides ABZR87_RS19825 and ABZR87_RS19830 are separated by 141 nucleotides
ABZR87_RS19820: ABZR87_RS19820 - IclR family transcriptional regulator C-terminal domain-containing protein, at 819,385 to 820,152
_RS19820
ABZR87_RS19825: ABZR87_RS19825 - sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein, at 820,291 to 822,174
_RS19825
ABZR87_RS19830: ABZR87_RS19830 - porin, at 822,316 to 823,380
_RS19830
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.296 kb on - strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.364 kb on - strand at 819.364 kb on - strand at 819.386 kb on + strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.541 kb on + strand, within ABZR87_RS19820 at 819.541 kb on + strand, within ABZR87_RS19820 at 819.541 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.635 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.644 kb on + strand, within ABZR87_RS19820 at 819.644 kb on + strand, within ABZR87_RS19820 at 819.645 kb on - strand, within ABZR87_RS19820 at 819.833 kb on + strand, within ABZR87_RS19820 at 819.834 kb on - strand, within ABZR87_RS19820 at 819.912 kb on - strand, within ABZR87_RS19820 at 819.974 kb on + strand, within ABZR87_RS19820 at 819.974 kb on + strand, within ABZR87_RS19820 at 820.001 kb on + strand, within ABZR87_RS19820 at 820.158 kb on + strand at 820.177 kb on + strand at 820.178 kb on - strand at 820.178 kb on - strand at 820.178 kb on - strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.250 kb on + strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.251 kb on - strand at 820.492 kb on + strand, within ABZR87_RS19825 at 820.492 kb on + strand, within ABZR87_RS19825 at 820.492 kb on + strand, within ABZR87_RS19825 at 820.493 kb on - strand, within ABZR87_RS19825 at 820.712 kb on - strand, within ABZR87_RS19825 at 821.216 kb on + strand, within ABZR87_RS19825 at 821.217 kb on - strand, within ABZR87_RS19825 at 821.232 kb on + strand, within ABZR87_RS19825 at 821.305 kb on - strand, within ABZR87_RS19825 at 821.417 kb on + strand, within ABZR87_RS19825 at 821.417 kb on + strand, within ABZR87_RS19825 at 821.418 kb on - strand, within ABZR87_RS19825 at 821.418 kb on - strand, within ABZR87_RS19825 at 821.418 kb on - strand, within ABZR87_RS19825 at 821.500 kb on + strand, within ABZR87_RS19825 at 821.501 kb on - strand, within ABZR87_RS19825 at 821.501 kb on - strand, within ABZR87_RS19825 at 821.536 kb on + strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.537 kb on - strand, within ABZR87_RS19825 at 821.653 kb on + strand, within ABZR87_RS19825 at 821.654 kb on - strand, within ABZR87_RS19825 at 821.788 kb on - strand, within ABZR87_RS19825 at 821.788 kb on - strand, within ABZR87_RS19825 at 821.816 kb on - strand, within ABZR87_RS19825 at 821.923 kb on + strand, within ABZR87_RS19825 at 821.923 kb on + strand, within ABZR87_RS19825 at 821.924 kb on - strand, within ABZR87_RS19825 at 821.924 kb on - strand, within ABZR87_RS19825 at 821.927 kb on - strand, within ABZR87_RS19825 at 821.927 kb on - strand, within ABZR87_RS19825 at 821.927 kb on - strand, within ABZR87_RS19825 at 822.034 kb on + strand at 822.034 kb on + strand at 822.034 kb on + strand at 822.034 kb on + strand at 822.035 kb on - strand at 822.035 kb on - strand at 822.097 kb on + strand at 822.098 kb on - strand at 822.098 kb on - strand at 822.291 kb on - strand at 822.400 kb on + strand at 822.400 kb on + strand at 822.428 kb on - strand, within ABZR87_RS19830 at 822.428 kb on - strand, within ABZR87_RS19830 at 822.534 kb on + strand, within ABZR87_RS19830 at 822.535 kb on - strand, within ABZR87_RS19830 at 822.535 kb on - strand, within ABZR87_RS19830 at 822.549 kb on + strand, within ABZR87_RS19830 at 822.549 kb on + strand, within ABZR87_RS19830 at 822.644 kb on - strand, within ABZR87_RS19830 at 822.655 kb on + strand, within ABZR87_RS19830 at 822.655 kb on + strand, within ABZR87_RS19830 at 822.670 kb on + strand, within ABZR87_RS19830 at 822.670 kb on + strand, within ABZR87_RS19830 at 822.700 kb on + strand, within ABZR87_RS19830 at 822.700 kb on + strand, within ABZR87_RS19830 at 822.701 kb on - strand, within ABZR87_RS19830 at 822.724 kb on - strand, within ABZR87_RS19830 at 822.724 kb on - strand, within ABZR87_RS19830 at 822.754 kb on + strand, within ABZR87_RS19830 at 822.754 kb on + strand, within ABZR87_RS19830 at 822.754 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.787 kb on + strand, within ABZR87_RS19830 at 822.788 kb on - strand, within ABZR87_RS19830 at 822.889 kb on + strand, within ABZR87_RS19830 at 822.889 kb on + strand, within ABZR87_RS19830 at 822.889 kb on + strand, within ABZR87_RS19830 at 822.890 kb on - strand, within ABZR87_RS19830 at 822.890 kb on - strand, within ABZR87_RS19830 at 822.923 kb on - strand, within ABZR87_RS19830 at 822.923 kb on - strand, within ABZR87_RS19830 at 823.020 kb on + strand, within ABZR87_RS19830 at 823.020 kb on + strand, within ABZR87_RS19830 at 823.021 kb on - strand, within ABZR87_RS19830 at 823.039 kb on + strand, within ABZR87_RS19830 at 823.040 kb on - strand, within ABZR87_RS19830 at 823.050 kb on + strand, within ABZR87_RS19830 at 823.050 kb on + strand, within ABZR87_RS19830 at 823.051 kb on - strand, within ABZR87_RS19830 at 823.051 kb on - strand, within ABZR87_RS19830 at 823.078 kb on + strand, within ABZR87_RS19830 at 823.079 kb on - strand, within ABZR87_RS19830 at 823.079 kb on - strand, within ABZR87_RS19830 at 823.096 kb on + strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830 at 823.097 kb on - strand, within ABZR87_RS19830
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 819,296 - -2.2 819,363 + +0.1 819,363 + -0.6 819,363 + +2.5 819,363 + -1.1 819,364 - +2.0 819,364 - -2.1 819,386 + -0.6 819,387 - -0.4 819,387 - -1.1 819,387 - +0.6 819,387 - +1.7 819,387 - -1.1 819,387 - -0.4 819,387 - -0.4 819,541 + ABZR87_RS19820 0.20 -0.1 819,541 + ABZR87_RS19820 0.20 -0.3 819,541 + ABZR87_RS19820 0.20 +1.0 819,575 + ABZR87_RS19820 0.25 -0.8 819,575 + ABZR87_RS19820 0.25 +1.2 819,575 + ABZR87_RS19820 0.25 +1.0 819,575 + ABZR87_RS19820 0.25 -1.4 819,575 + ABZR87_RS19820 0.25 -0.6 819,575 - ABZR87_RS19820 0.25 -0.4 819,576 - ABZR87_RS19820 0.25 -1.2 819,576 - ABZR87_RS19820 0.25 -0.1 819,576 - ABZR87_RS19820 0.25 -0.8 819,576 - ABZR87_RS19820 0.25 +1.4 819,635 + ABZR87_RS19820 0.33 -0.0 819,642 + ABZR87_RS19820 0.33 -0.5 819,642 + ABZR87_RS19820 0.33 +0.2 819,642 + ABZR87_RS19820 0.33 +0.4 819,643 - ABZR87_RS19820 0.34 +2.3 819,643 - ABZR87_RS19820 0.34 +1.3 819,643 - ABZR87_RS19820 0.34 -0.2 819,643 - ABZR87_RS19820 0.34 -0.5 819,643 - ABZR87_RS19820 0.34 -0.4 819,643 - ABZR87_RS19820 0.34 -1.7 819,643 - ABZR87_RS19820 0.34 +0.2 819,643 - ABZR87_RS19820 0.34 -0.1 819,644 + ABZR87_RS19820 0.34 -1.5 819,644 + ABZR87_RS19820 0.34 -0.9 819,645 - ABZR87_RS19820 0.34 -1.3 819,833 + ABZR87_RS19820 0.58 -1.7 819,834 - ABZR87_RS19820 0.58 +1.1 819,912 - ABZR87_RS19820 0.69 +2.5 819,974 + ABZR87_RS19820 0.77 +0.6 819,974 + ABZR87_RS19820 0.77 -0.4 820,001 + ABZR87_RS19820 0.80 -0.5 820,158 + -0.5 820,177 + +0.4 820,178 - -1.6 820,178 - -0.8 820,178 - +0.0 820,250 + +1.7 820,250 + -2.1 820,250 + -0.0 820,250 + +0.5 820,250 + -2.1 820,250 + +1.0 820,250 + +0.1 820,250 + -0.1 820,250 + -0.9 820,251 - -1.1 820,251 - -1.4 820,251 - -2.2 820,251 - +0.1 820,251 - +0.9 820,251 - -1.6 820,251 - -0.6 820,251 - -0.7 820,251 - -1.8 820,251 - -0.4 820,251 - -0.3 820,251 - -0.6 820,492 + ABZR87_RS19825 0.11 +2.4 820,492 + ABZR87_RS19825 0.11 -0.1 820,492 + ABZR87_RS19825 0.11 -0.1 820,493 - ABZR87_RS19825 0.11 +0.9 820,712 - ABZR87_RS19825 0.22 +0.0 821,216 + ABZR87_RS19825 0.49 -1.2 821,217 - ABZR87_RS19825 0.49 -1.0 821,232 + ABZR87_RS19825 0.50 +0.3 821,305 - ABZR87_RS19825 0.54 -1.4 821,417 + ABZR87_RS19825 0.60 +0.2 821,417 + ABZR87_RS19825 0.60 +1.5 821,418 - ABZR87_RS19825 0.60 +0.2 821,418 - ABZR87_RS19825 0.60 -0.5 821,418 - ABZR87_RS19825 0.60 -0.6 821,500 + ABZR87_RS19825 0.64 +1.0 821,501 - ABZR87_RS19825 0.64 -0.7 821,501 - ABZR87_RS19825 0.64 -1.1 821,536 + ABZR87_RS19825 0.66 -1.0 821,537 - ABZR87_RS19825 0.66 +0.7 821,537 - ABZR87_RS19825 0.66 -2.2 821,537 - ABZR87_RS19825 0.66 -1.2 821,537 - ABZR87_RS19825 0.66 +1.1 821,653 + ABZR87_RS19825 0.72 -0.5 821,654 - ABZR87_RS19825 0.72 -2.5 821,788 - ABZR87_RS19825 0.79 +0.5 821,788 - ABZR87_RS19825 0.79 -0.3 821,816 - ABZR87_RS19825 0.81 +0.1 821,923 + ABZR87_RS19825 0.87 -0.3 821,923 + ABZR87_RS19825 0.87 -1.1 821,924 - ABZR87_RS19825 0.87 -1.2 821,924 - ABZR87_RS19825 0.87 -1.5 821,927 - ABZR87_RS19825 0.87 -0.3 821,927 - ABZR87_RS19825 0.87 -1.8 821,927 - ABZR87_RS19825 0.87 -0.2 822,034 + -0.7 822,034 + -1.6 822,034 + +2.0 822,034 + +0.2 822,035 - -0.3 822,035 - -0.8 822,097 + -1.7 822,098 - -0.1 822,098 - -0.9 822,291 - -1.1 822,400 + +1.0 822,400 + +0.9 822,428 - ABZR87_RS19830 0.11 +0.0 822,428 - ABZR87_RS19830 0.11 -1.9 822,534 + ABZR87_RS19830 0.20 +0.5 822,535 - ABZR87_RS19830 0.21 -0.0 822,535 - ABZR87_RS19830 0.21 -1.1 822,549 + ABZR87_RS19830 0.22 -0.7 822,549 + ABZR87_RS19830 0.22 -1.1 822,644 - ABZR87_RS19830 0.31 -1.8 822,655 + ABZR87_RS19830 0.32 -0.1 822,655 + ABZR87_RS19830 0.32 -0.3 822,670 + ABZR87_RS19830 0.33 +1.4 822,670 + ABZR87_RS19830 0.33 +1.2 822,700 + ABZR87_RS19830 0.36 +1.6 822,700 + ABZR87_RS19830 0.36 -0.8 822,701 - ABZR87_RS19830 0.36 -0.1 822,724 - ABZR87_RS19830 0.38 -0.4 822,724 - ABZR87_RS19830 0.38 +0.0 822,754 + ABZR87_RS19830 0.41 -0.1 822,754 + ABZR87_RS19830 0.41 -1.9 822,754 + ABZR87_RS19830 0.41 -0.0 822,787 + ABZR87_RS19830 0.44 -0.8 822,787 + ABZR87_RS19830 0.44 +0.5 822,787 + ABZR87_RS19830 0.44 -0.6 822,787 + ABZR87_RS19830 0.44 +1.5 822,788 - ABZR87_RS19830 0.44 -0.6 822,889 + ABZR87_RS19830 0.54 +0.6 822,889 + ABZR87_RS19830 0.54 -0.2 822,889 + ABZR87_RS19830 0.54 +0.1 822,890 - ABZR87_RS19830 0.54 -0.5 822,890 - ABZR87_RS19830 0.54 +1.1 822,923 - ABZR87_RS19830 0.57 -0.1 822,923 - ABZR87_RS19830 0.57 -0.8 823,020 + ABZR87_RS19830 0.66 +0.4 823,020 + ABZR87_RS19830 0.66 +0.5 823,021 - ABZR87_RS19830 0.66 -0.1 823,039 + ABZR87_RS19830 0.68 -1.1 823,040 - ABZR87_RS19830 0.68 -0.9 823,050 + ABZR87_RS19830 0.69 -1.1 823,050 + ABZR87_RS19830 0.69 -1.3 823,051 - ABZR87_RS19830 0.69 -0.8 823,051 - ABZR87_RS19830 0.69 +0.1 823,078 + ABZR87_RS19830 0.72 -0.3 823,079 - ABZR87_RS19830 0.72 +0.2 823,079 - ABZR87_RS19830 0.72 +0.0 823,096 + ABZR87_RS19830 0.73 +0.8 823,097 - ABZR87_RS19830 0.73 -2.8 823,097 - ABZR87_RS19830 0.73 -1.0 823,097 - ABZR87_RS19830 0.73 +0.5 823,097 - ABZR87_RS19830 0.73 -1.7 823,097 - ABZR87_RS19830 0.73 +0.2 823,097 - ABZR87_RS19830 0.73 -1.7 823,097 - ABZR87_RS19830 0.73 +0.1
Or see this region's nucleotide sequence