Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19805 and ABZR87_RS19810 are separated by 4 nucleotides ABZR87_RS19810 and ABZR87_RS19815 are separated by 19 nucleotides ABZR87_RS19815 and ABZR87_RS19820 are separated by 229 nucleotides
ABZR87_RS19805: ABZR87_RS19805 - MFS transporter, at 815,722 to 816,912
_RS19805
ABZR87_RS19810: ABZR87_RS19810 - ThiF family adenylyltransferase, at 816,917 to 817,750
_RS19810
ABZR87_RS19815: ABZR87_RS19815 - MFS transporter, at 817,770 to 819,155
_RS19815
ABZR87_RS19820: ABZR87_RS19820 - IclR family transcriptional regulator C-terminal domain-containing protein, at 819,385 to 820,152
_RS19820
Position (kb) 817
818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 816.836 kb on + strand at 816.836 kb on + strand at 816.836 kb on + strand at 816.836 kb on + strand at 816.837 kb on - strand at 816.837 kb on - strand at 816.921 kb on + strand at 816.922 kb on - strand at 817.233 kb on + strand, within ABZR87_RS19810 at 817.287 kb on + strand, within ABZR87_RS19810 at 817.287 kb on + strand, within ABZR87_RS19810 at 817.287 kb on + strand, within ABZR87_RS19810 at 817.288 kb on - strand, within ABZR87_RS19810 at 817.609 kb on - strand, within ABZR87_RS19810 at 817.609 kb on - strand, within ABZR87_RS19810 at 817.677 kb on + strand at 817.677 kb on + strand at 817.677 kb on + strand at 817.677 kb on + strand at 817.678 kb on - strand at 817.804 kb on + strand at 817.805 kb on - strand at 817.805 kb on - strand at 817.864 kb on + strand at 817.864 kb on + strand at 817.864 kb on + strand at 817.864 kb on + strand at 817.865 kb on - strand at 817.974 kb on - strand, within ABZR87_RS19815 at 818.090 kb on + strand, within ABZR87_RS19815 at 818.092 kb on + strand, within ABZR87_RS19815 at 818.092 kb on + strand, within ABZR87_RS19815 at 818.093 kb on - strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.101 kb on + strand, within ABZR87_RS19815 at 818.102 kb on - strand, within ABZR87_RS19815 at 818.102 kb on - strand, within ABZR87_RS19815 at 818.102 kb on - strand, within ABZR87_RS19815 at 818.167 kb on + strand, within ABZR87_RS19815 at 818.168 kb on - strand, within ABZR87_RS19815 at 818.173 kb on + strand, within ABZR87_RS19815 at 818.173 kb on + strand, within ABZR87_RS19815 at 818.174 kb on - strand, within ABZR87_RS19815 at 818.257 kb on + strand, within ABZR87_RS19815 at 818.257 kb on + strand, within ABZR87_RS19815 at 818.257 kb on + strand, within ABZR87_RS19815 at 818.257 kb on + strand, within ABZR87_RS19815 at 818.257 kb on + strand, within ABZR87_RS19815 at 818.258 kb on - strand, within ABZR87_RS19815 at 818.259 kb on - strand, within ABZR87_RS19815 at 818.308 kb on + strand, within ABZR87_RS19815 at 818.308 kb on + strand, within ABZR87_RS19815 at 818.308 kb on + strand, within ABZR87_RS19815 at 818.308 kb on + strand, within ABZR87_RS19815 at 818.308 kb on + strand, within ABZR87_RS19815 at 818.309 kb on - strand, within ABZR87_RS19815 at 818.309 kb on - strand, within ABZR87_RS19815 at 818.309 kb on - strand, within ABZR87_RS19815 at 818.309 kb on - strand, within ABZR87_RS19815 at 818.309 kb on - strand, within ABZR87_RS19815 at 818.533 kb on + strand, within ABZR87_RS19815 at 818.533 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.611 kb on + strand, within ABZR87_RS19815 at 818.612 kb on - strand, within ABZR87_RS19815 at 818.612 kb on - strand, within ABZR87_RS19815 at 818.612 kb on - strand, within ABZR87_RS19815 at 818.675 kb on + strand, within ABZR87_RS19815 at 818.676 kb on - strand, within ABZR87_RS19815 at 818.676 kb on - strand, within ABZR87_RS19815 at 818.676 kb on - strand, within ABZR87_RS19815 at 818.821 kb on + strand, within ABZR87_RS19815 at 818.821 kb on + strand, within ABZR87_RS19815 at 818.821 kb on + strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.822 kb on - strand, within ABZR87_RS19815 at 818.950 kb on + strand, within ABZR87_RS19815 at 818.950 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.962 kb on + strand, within ABZR87_RS19815 at 818.963 kb on - strand, within ABZR87_RS19815 at 818.963 kb on - strand, within ABZR87_RS19815 at 819.049 kb on + strand at 819.050 kb on - strand at 819.050 kb on - strand at 819.050 kb on - strand at 819.053 kb on + strand at 819.053 kb on + strand at 819.054 kb on - strand at 819.054 kb on - strand at 819.064 kb on + strand at 819.065 kb on - strand at 819.065 kb on - strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.136 kb on + strand at 819.137 kb on - strand at 819.171 kb on + strand at 819.171 kb on + strand at 819.171 kb on + strand at 819.172 kb on - strand at 819.172 kb on - strand at 819.217 kb on + strand at 819.217 kb on + strand at 819.217 kb on + strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.218 kb on - strand at 819.233 kb on + strand at 819.233 kb on + strand at 819.234 kb on - strand at 819.234 kb on - strand at 819.234 kb on - strand at 819.296 kb on - strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.363 kb on + strand at 819.364 kb on - strand at 819.364 kb on - strand at 819.386 kb on + strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.387 kb on - strand at 819.541 kb on + strand, within ABZR87_RS19820 at 819.541 kb on + strand, within ABZR87_RS19820 at 819.541 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on + strand, within ABZR87_RS19820 at 819.575 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.576 kb on - strand, within ABZR87_RS19820 at 819.635 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.642 kb on + strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.643 kb on - strand, within ABZR87_RS19820 at 819.644 kb on + strand, within ABZR87_RS19820 at 819.644 kb on + strand, within ABZR87_RS19820 at 819.645 kb on - strand, within ABZR87_RS19820 at 819.833 kb on + strand, within ABZR87_RS19820 at 819.834 kb on - strand, within ABZR87_RS19820 at 819.912 kb on - strand, within ABZR87_RS19820 at 819.974 kb on + strand, within ABZR87_RS19820 at 819.974 kb on + strand, within ABZR87_RS19820 at 820.001 kb on + strand, within ABZR87_RS19820
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 816,836 + +0.0 816,836 + -0.1 816,836 + +0.3 816,836 + -0.6 816,837 - -0.6 816,837 - +1.2 816,921 + +0.3 816,922 - -0.8 817,233 + ABZR87_RS19810 0.38 +0.4 817,287 + ABZR87_RS19810 0.44 +0.7 817,287 + ABZR87_RS19810 0.44 -0.9 817,287 + ABZR87_RS19810 0.44 +0.4 817,288 - ABZR87_RS19810 0.44 -1.9 817,609 - ABZR87_RS19810 0.83 -0.1 817,609 - ABZR87_RS19810 0.83 +0.5 817,677 + -0.0 817,677 + +0.2 817,677 + +1.4 817,677 + -0.1 817,678 - +0.8 817,804 + -0.3 817,805 - -0.5 817,805 - -1.3 817,864 + -2.2 817,864 + -0.6 817,864 + +0.2 817,864 + +1.2 817,865 - -1.6 817,974 - ABZR87_RS19815 0.15 -1.5 818,090 + ABZR87_RS19815 0.23 +0.3 818,092 + ABZR87_RS19815 0.23 +0.8 818,092 + ABZR87_RS19815 0.23 +0.7 818,093 - ABZR87_RS19815 0.23 +1.4 818,101 + ABZR87_RS19815 0.24 +0.8 818,101 + ABZR87_RS19815 0.24 -1.0 818,101 + ABZR87_RS19815 0.24 -0.1 818,101 + ABZR87_RS19815 0.24 -0.8 818,101 + ABZR87_RS19815 0.24 +0.9 818,101 + ABZR87_RS19815 0.24 -1.3 818,101 + ABZR87_RS19815 0.24 -1.1 818,102 - ABZR87_RS19815 0.24 -0.1 818,102 - ABZR87_RS19815 0.24 -0.8 818,102 - ABZR87_RS19815 0.24 +0.7 818,167 + ABZR87_RS19815 0.29 -1.1 818,168 - ABZR87_RS19815 0.29 +1.4 818,173 + ABZR87_RS19815 0.29 +0.4 818,173 + ABZR87_RS19815 0.29 -1.0 818,174 - ABZR87_RS19815 0.29 +0.5 818,257 + ABZR87_RS19815 0.35 +1.1 818,257 + ABZR87_RS19815 0.35 -1.9 818,257 + ABZR87_RS19815 0.35 -2.0 818,257 + ABZR87_RS19815 0.35 -0.5 818,257 + ABZR87_RS19815 0.35 +0.3 818,258 - ABZR87_RS19815 0.35 -0.5 818,259 - ABZR87_RS19815 0.35 +0.3 818,308 + ABZR87_RS19815 0.39 -0.6 818,308 + ABZR87_RS19815 0.39 +0.0 818,308 + ABZR87_RS19815 0.39 +0.5 818,308 + ABZR87_RS19815 0.39 +0.7 818,308 + ABZR87_RS19815 0.39 -1.1 818,309 - ABZR87_RS19815 0.39 -0.0 818,309 - ABZR87_RS19815 0.39 +0.0 818,309 - ABZR87_RS19815 0.39 -0.5 818,309 - ABZR87_RS19815 0.39 -0.7 818,309 - ABZR87_RS19815 0.39 +0.6 818,533 + ABZR87_RS19815 0.55 +0.2 818,533 + ABZR87_RS19815 0.55 +0.2 818,611 + ABZR87_RS19815 0.61 -0.3 818,611 + ABZR87_RS19815 0.61 -0.1 818,611 + ABZR87_RS19815 0.61 -2.0 818,611 + ABZR87_RS19815 0.61 +1.4 818,611 + ABZR87_RS19815 0.61 -0.7 818,612 - ABZR87_RS19815 0.61 -0.1 818,612 - ABZR87_RS19815 0.61 -0.6 818,612 - ABZR87_RS19815 0.61 -0.8 818,675 + ABZR87_RS19815 0.65 -0.4 818,676 - ABZR87_RS19815 0.65 +0.1 818,676 - ABZR87_RS19815 0.65 +2.4 818,676 - ABZR87_RS19815 0.65 -0.1 818,821 + ABZR87_RS19815 0.76 -0.2 818,821 + ABZR87_RS19815 0.76 -0.5 818,821 + ABZR87_RS19815 0.76 +0.6 818,822 - ABZR87_RS19815 0.76 -1.2 818,822 - ABZR87_RS19815 0.76 -1.2 818,822 - ABZR87_RS19815 0.76 +1.5 818,822 - ABZR87_RS19815 0.76 +0.9 818,950 + ABZR87_RS19815 0.85 +1.4 818,950 + ABZR87_RS19815 0.85 -0.9 818,962 + ABZR87_RS19815 0.86 -0.5 818,962 + ABZR87_RS19815 0.86 +1.7 818,962 + ABZR87_RS19815 0.86 -0.2 818,962 + ABZR87_RS19815 0.86 -1.2 818,963 - ABZR87_RS19815 0.86 -0.1 818,963 - ABZR87_RS19815 0.86 +0.2 819,049 + -0.8 819,050 - -0.2 819,050 - +0.9 819,050 - -0.0 819,053 + -0.4 819,053 + +0.7 819,054 - +0.8 819,054 - +0.3 819,064 + -1.7 819,065 - +0.5 819,065 - -0.5 819,136 + +0.1 819,136 + -0.8 819,136 + -0.6 819,136 + +1.9 819,136 + +1.6 819,137 - +1.8 819,171 + -1.9 819,171 + +0.5 819,171 + +0.8 819,172 - -2.2 819,172 - +0.5 819,217 + +0.0 819,217 + -1.4 819,217 + +0.3 819,218 - +0.6 819,218 - -1.1 819,218 - +0.3 819,218 - +0.6 819,218 - -1.0 819,233 + -0.1 819,233 + -0.1 819,234 - +0.3 819,234 - -0.8 819,234 - -1.1 819,296 - -2.2 819,363 + +0.1 819,363 + -0.6 819,363 + +2.5 819,363 + -1.1 819,364 - +2.0 819,364 - -2.1 819,386 + -0.6 819,387 - -0.4 819,387 - -1.1 819,387 - +0.6 819,387 - +1.7 819,387 - -1.1 819,387 - -0.4 819,387 - -0.4 819,541 + ABZR87_RS19820 0.20 -0.1 819,541 + ABZR87_RS19820 0.20 -0.3 819,541 + ABZR87_RS19820 0.20 +1.0 819,575 + ABZR87_RS19820 0.25 -0.8 819,575 + ABZR87_RS19820 0.25 +1.2 819,575 + ABZR87_RS19820 0.25 +1.0 819,575 + ABZR87_RS19820 0.25 -1.4 819,575 + ABZR87_RS19820 0.25 -0.6 819,575 - ABZR87_RS19820 0.25 -0.4 819,576 - ABZR87_RS19820 0.25 -1.2 819,576 - ABZR87_RS19820 0.25 -0.1 819,576 - ABZR87_RS19820 0.25 -0.8 819,576 - ABZR87_RS19820 0.25 +1.4 819,635 + ABZR87_RS19820 0.33 -0.0 819,642 + ABZR87_RS19820 0.33 -0.5 819,642 + ABZR87_RS19820 0.33 +0.2 819,642 + ABZR87_RS19820 0.33 +0.4 819,643 - ABZR87_RS19820 0.34 +2.3 819,643 - ABZR87_RS19820 0.34 +1.3 819,643 - ABZR87_RS19820 0.34 -0.2 819,643 - ABZR87_RS19820 0.34 -0.5 819,643 - ABZR87_RS19820 0.34 -0.4 819,643 - ABZR87_RS19820 0.34 -1.7 819,643 - ABZR87_RS19820 0.34 +0.2 819,643 - ABZR87_RS19820 0.34 -0.1 819,644 + ABZR87_RS19820 0.34 -1.5 819,644 + ABZR87_RS19820 0.34 -0.9 819,645 - ABZR87_RS19820 0.34 -1.3 819,833 + ABZR87_RS19820 0.58 -1.7 819,834 - ABZR87_RS19820 0.58 +1.1 819,912 - ABZR87_RS19820 0.69 +2.5 819,974 + ABZR87_RS19820 0.77 +0.6 819,974 + ABZR87_RS19820 0.77 -0.4 820,001 + ABZR87_RS19820 0.80 -0.5
Or see this region's nucleotide sequence