Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19185

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19180 and ABZR87_RS19185 overlap by 17 nucleotidesABZR87_RS19185 and ABZR87_RS19190 are separated by 105 nucleotidesABZR87_RS19190 and ABZR87_RS19195 are separated by 82 nucleotides ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651 _RS19180 ABZR87_RS19185: ABZR87_RS19185 - response regulator, at 668,635 to 669,294 _RS19185 ABZR87_RS19190: ABZR87_RS19190 - Spy/CpxP family protein refolding chaperone, at 669,400 to 669,975 _RS19190 ABZR87_RS19195: ABZR87_RS19195 - universal stress protein, at 670,058 to 670,498 _RS19195 Position (kb) 668 669 670Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 667.715 kb on + strand, within ABZR87_RS19180at 667.715 kb on + strand, within ABZR87_RS19180at 667.716 kb on - strand, within ABZR87_RS19180at 667.839 kb on + strand, within ABZR87_RS19180at 667.839 kb on + strand, within ABZR87_RS19180at 667.839 kb on + strand, within ABZR87_RS19180at 667.840 kb on - strand, within ABZR87_RS19180at 667.840 kb on - strand, within ABZR87_RS19180at 668.042 kb on + strand, within ABZR87_RS19180at 668.043 kb on - strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.103 kb on + strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.104 kb on - strand, within ABZR87_RS19180at 668.331 kb on + strand, within ABZR87_RS19180at 668.333 kb on + strand, within ABZR87_RS19180at 668.334 kb on - strand, within ABZR87_RS19180at 668.687 kb on - strandat 668.687 kb on - strandat 668.687 kb on - strandat 668.705 kb on - strand, within ABZR87_RS19185at 668.731 kb on - strand, within ABZR87_RS19185at 668.731 kb on - strand, within ABZR87_RS19185at 668.920 kb on + strand, within ABZR87_RS19185at 668.921 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.157 kb on + strand, within ABZR87_RS19185at 669.158 kb on - strand, within ABZR87_RS19185at 669.346 kb on - strandat 669.350 kb on + strandat 669.350 kb on + strandat 669.351 kb on + strandat 669.351 kb on - strandat 669.351 kb on - strandat 669.356 kb on + strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.384 kb on + strandat 669.385 kb on - strandat 669.676 kb on + strand, within ABZR87_RS19190at 669.708 kb on + strand, within ABZR87_RS19190at 669.708 kb on + strand, within ABZR87_RS19190at 669.709 kb on - strand, within ABZR87_RS19190at 669.709 kb on - strand, within ABZR87_RS19190at 669.763 kb on + strand, within ABZR87_RS19190at 669.764 kb on - strand, within ABZR87_RS19190at 669.973 kb on + strandat 670.066 kb on - strandat 670.089 kb on + strandat 670.089 kb on + strandat 670.090 kb on - strandat 670.212 kb on + strand, within ABZR87_RS19195at 670.212 kb on + strand, within ABZR87_RS19195at 670.213 kb on - strand, within ABZR87_RS19195at 670.213 kb on - strand, within ABZR87_RS19195at 670.213 kb on - strand, within ABZR87_RS19195

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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667,715 + ABZR87_RS19180 0.39 -0.5
667,715 + ABZR87_RS19180 0.39 -2.0
667,716 - ABZR87_RS19180 0.39 +1.1
667,839 + ABZR87_RS19180 0.47 +1.3
667,839 + ABZR87_RS19180 0.47 -0.1
667,839 + ABZR87_RS19180 0.47 +2.0
667,840 - ABZR87_RS19180 0.47 -1.6
667,840 - ABZR87_RS19180 0.47 -0.8
668,042 + ABZR87_RS19180 0.61 +0.2
668,043 - ABZR87_RS19180 0.61 +1.6
668,103 + ABZR87_RS19180 0.64 -0.1
668,103 + ABZR87_RS19180 0.64 -0.5
668,103 + ABZR87_RS19180 0.64 -0.2
668,103 + ABZR87_RS19180 0.64 -0.2
668,103 + ABZR87_RS19180 0.64 +1.7
668,104 - ABZR87_RS19180 0.65 +0.8
668,104 - ABZR87_RS19180 0.65 +1.8
668,104 - ABZR87_RS19180 0.65 -2.8
668,104 - ABZR87_RS19180 0.65 +2.5
668,331 + ABZR87_RS19180 0.79 -0.4
668,333 + ABZR87_RS19180 0.79 -1.3
668,334 - ABZR87_RS19180 0.79 -0.9
668,687 - -0.6
668,687 - +0.5
668,687 - -1.2
668,705 - ABZR87_RS19185 0.11 +0.4
668,731 - ABZR87_RS19185 0.15 -0.1
668,731 - ABZR87_RS19185 0.15 -0.7
668,920 + ABZR87_RS19185 0.43 +1.1
668,921 - ABZR87_RS19185 0.43 +0.3
669,038 - ABZR87_RS19185 0.61 +2.7
669,038 - ABZR87_RS19185 0.61 -0.9
669,038 - ABZR87_RS19185 0.61 -1.7
669,157 + ABZR87_RS19185 0.79 +2.4
669,158 - ABZR87_RS19185 0.79 -0.1
669,346 - -0.5
669,350 + +0.2
669,350 + -2.5
669,351 + -2.1
669,351 - +1.7
669,351 - -1.3
669,356 + +0.2
669,357 - +2.1
669,357 - +0.3
669,357 - +0.5
669,357 - -0.6
669,384 + -0.1
669,385 - -0.3
669,676 + ABZR87_RS19190 0.48 +1.7
669,708 + ABZR87_RS19190 0.53 +0.3
669,708 + ABZR87_RS19190 0.53 -1.3
669,709 - ABZR87_RS19190 0.54 -0.1
669,709 - ABZR87_RS19190 0.54 -1.2
669,763 + ABZR87_RS19190 0.63 -0.8
669,764 - ABZR87_RS19190 0.63 +0.6
669,973 + -0.1
670,066 - +0.3
670,089 + -0.0
670,089 + +0.3
670,090 - -0.4
670,212 + ABZR87_RS19195 0.35 +1.3
670,212 + ABZR87_RS19195 0.35 +3.0
670,213 - ABZR87_RS19195 0.35 +0.7
670,213 - ABZR87_RS19195 0.35 -0.4
670,213 - ABZR87_RS19195 0.35 -0.1

Or see this region's nucleotide sequence