Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19085 and ABZR87_RS19090 are separated by 34 nucleotides ABZR87_RS19090 and ABZR87_RS19095 are separated by 34 nucleotides ABZR87_RS19095 and ABZR87_RS19100 are separated by 81 nucleotides ABZR87_RS19100 and ABZR87_RS19105 are separated by 41 nucleotides
ABZR87_RS19085: ABZR87_RS19085 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 643,486 to 644,211
_RS19085
ABZR87_RS19090: ABZR87_RS19090 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 644,246 to 644,872
_RS19090
ABZR87_RS19095: ABZR87_RS19095 - gluconate:H+ symporter, at 644,907 to 646,259
_RS19095
ABZR87_RS19100: ABZR87_RS19100 - RidA family protein, at 646,341 to 646,727
_RS19100
ABZR87_RS19105: ABZR87_RS19105 - amidohydrolase family protein, at 646,769 to 648,265
_RS19105
Position (kb) 644
645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 644.010 kb on + strand, within ABZR87_RS19085 at 644.010 kb on + strand, within ABZR87_RS19085 at 644.011 kb on - strand, within ABZR87_RS19085 at 644.067 kb on - strand, within ABZR87_RS19085 at 644.883 kb on + strand at 644.883 kb on + strand at 644.884 kb on - strand at 644.908 kb on + strand at 644.909 kb on - strand at 644.909 kb on - strand at 645.013 kb on + strand at 645.013 kb on + strand at 645.013 kb on + strand at 645.406 kb on + strand, within ABZR87_RS19095 at 645.406 kb on + strand, within ABZR87_RS19095 at 645.406 kb on + strand, within ABZR87_RS19095 at 645.406 kb on + strand, within ABZR87_RS19095 at 645.407 kb on - strand, within ABZR87_RS19095 at 645.407 kb on - strand, within ABZR87_RS19095 at 645.407 kb on - strand, within ABZR87_RS19095 at 645.640 kb on + strand, within ABZR87_RS19095 at 645.640 kb on + strand, within ABZR87_RS19095 at 645.640 kb on + strand, within ABZR87_RS19095 at 645.641 kb on - strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.709 kb on + strand, within ABZR87_RS19095 at 645.710 kb on - strand, within ABZR87_RS19095 at 645.710 kb on - strand, within ABZR87_RS19095 at 645.710 kb on - strand, within ABZR87_RS19095 at 645.710 kb on - strand, within ABZR87_RS19095 at 645.710 kb on - strand, within ABZR87_RS19095 at 645.710 kb on - strand, within ABZR87_RS19095 at 645.739 kb on + strand, within ABZR87_RS19095 at 646.195 kb on + strand at 646.233 kb on + strand at 646.234 kb on - strand at 646.279 kb on + strand at 646.279 kb on + strand at 646.280 kb on - strand at 646.280 kb on - strand at 646.280 kb on - strand at 646.280 kb on - strand at 646.280 kb on - strand at 646.354 kb on + strand at 646.439 kb on - strand, within ABZR87_RS19100 at 646.439 kb on - strand, within ABZR87_RS19100 at 646.731 kb on + strand at 646.731 kb on + strand at 646.873 kb on - strand at 646.989 kb on + strand, within ABZR87_RS19105 at 646.989 kb on + strand, within ABZR87_RS19105 at 646.990 kb on - strand, within ABZR87_RS19105 at 647.097 kb on + strand, within ABZR87_RS19105 at 647.097 kb on + strand, within ABZR87_RS19105 at 647.097 kb on + strand, within ABZR87_RS19105 at 647.097 kb on + strand, within ABZR87_RS19105 at 647.098 kb on - strand, within ABZR87_RS19105 at 647.098 kb on - strand, within ABZR87_RS19105 at 647.098 kb on - strand, within ABZR87_RS19105 at 647.101 kb on - strand, within ABZR87_RS19105 at 647.101 kb on - strand, within ABZR87_RS19105 at 647.232 kb on + strand, within ABZR87_RS19105
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 643,961 + ABZR87_RS19085 0.65 -0.9 643,961 + ABZR87_RS19085 0.65 -0.3 643,961 + ABZR87_RS19085 0.65 +0.1 643,962 - ABZR87_RS19085 0.66 -0.4 643,962 - ABZR87_RS19085 0.66 -2.0 643,962 - ABZR87_RS19085 0.66 -0.3 644,010 + ABZR87_RS19085 0.72 -0.8 644,010 + ABZR87_RS19085 0.72 +0.9 644,011 - ABZR87_RS19085 0.72 -1.3 644,067 - ABZR87_RS19085 0.80 -0.3 644,883 + -0.4 644,883 + -2.9 644,884 - +2.0 644,908 + +0.8 644,909 - -1.4 644,909 - +0.6 645,013 + -2.1 645,013 + -0.9 645,013 + -0.9 645,406 + ABZR87_RS19095 0.37 -1.8 645,406 + ABZR87_RS19095 0.37 +0.6 645,406 + ABZR87_RS19095 0.37 -0.6 645,406 + ABZR87_RS19095 0.37 -1.7 645,407 - ABZR87_RS19095 0.37 -1.9 645,407 - ABZR87_RS19095 0.37 -1.4 645,407 - ABZR87_RS19095 0.37 -0.5 645,640 + ABZR87_RS19095 0.54 +0.8 645,640 + ABZR87_RS19095 0.54 +0.2 645,640 + ABZR87_RS19095 0.54 -1.7 645,641 - ABZR87_RS19095 0.54 -1.0 645,709 + ABZR87_RS19095 0.59 -1.9 645,709 + ABZR87_RS19095 0.59 -1.2 645,709 + ABZR87_RS19095 0.59 -1.8 645,709 + ABZR87_RS19095 0.59 -2.4 645,709 + ABZR87_RS19095 0.59 -1.7 645,709 + ABZR87_RS19095 0.59 -2.2 645,709 + ABZR87_RS19095 0.59 -0.7 645,709 + ABZR87_RS19095 0.59 +0.5 645,709 + ABZR87_RS19095 0.59 -1.2 645,710 - ABZR87_RS19095 0.59 -0.5 645,710 - ABZR87_RS19095 0.59 -1.7 645,710 - ABZR87_RS19095 0.59 +0.1 645,710 - ABZR87_RS19095 0.59 +0.7 645,710 - ABZR87_RS19095 0.59 +3.7 645,710 - ABZR87_RS19095 0.59 -0.8 645,739 + ABZR87_RS19095 0.61 -2.2 646,195 + -1.7 646,233 + -2.3 646,234 - -1.1 646,279 + -1.1 646,279 + -1.2 646,280 - +0.7 646,280 - +1.0 646,280 - +0.6 646,280 - -0.7 646,280 - -1.4 646,354 + -0.5 646,439 - ABZR87_RS19100 0.25 +0.2 646,439 - ABZR87_RS19100 0.25 -0.9 646,731 + -0.7 646,731 + -0.9 646,873 - -0.9 646,989 + ABZR87_RS19105 0.15 -1.5 646,989 + ABZR87_RS19105 0.15 -0.7 646,990 - ABZR87_RS19105 0.15 -0.9 647,097 + ABZR87_RS19105 0.22 -1.8 647,097 + ABZR87_RS19105 0.22 +2.0 647,097 + ABZR87_RS19105 0.22 -2.0 647,097 + ABZR87_RS19105 0.22 -2.7 647,098 - ABZR87_RS19105 0.22 +0.8 647,098 - ABZR87_RS19105 0.22 +0.6 647,098 - ABZR87_RS19105 0.22 -1.7 647,101 - ABZR87_RS19105 0.22 +0.2 647,101 - ABZR87_RS19105 0.22 +0.3 647,232 + ABZR87_RS19105 0.31 -0.7
Or see this region's nucleotide sequence