Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19095

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19085 and ABZR87_RS19090 are separated by 34 nucleotidesABZR87_RS19090 and ABZR87_RS19095 are separated by 34 nucleotidesABZR87_RS19095 and ABZR87_RS19100 are separated by 81 nucleotidesABZR87_RS19100 and ABZR87_RS19105 are separated by 41 nucleotides ABZR87_RS19085: ABZR87_RS19085 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 643,486 to 644,211 _RS19085 ABZR87_RS19090: ABZR87_RS19090 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 644,246 to 644,872 _RS19090 ABZR87_RS19095: ABZR87_RS19095 - gluconate:H+ symporter, at 644,907 to 646,259 _RS19095 ABZR87_RS19100: ABZR87_RS19100 - RidA family protein, at 646,341 to 646,727 _RS19100 ABZR87_RS19105: ABZR87_RS19105 - amidohydrolase family protein, at 646,769 to 648,265 _RS19105 Position (kb) 644 645 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 643.961 kb on + strand, within ABZR87_RS19085at 643.961 kb on + strand, within ABZR87_RS19085at 643.961 kb on + strand, within ABZR87_RS19085at 643.962 kb on - strand, within ABZR87_RS19085at 643.962 kb on - strand, within ABZR87_RS19085at 643.962 kb on - strand, within ABZR87_RS19085at 644.010 kb on + strand, within ABZR87_RS19085at 644.010 kb on + strand, within ABZR87_RS19085at 644.011 kb on - strand, within ABZR87_RS19085at 644.067 kb on - strand, within ABZR87_RS19085at 644.883 kb on + strandat 644.883 kb on + strandat 644.884 kb on - strandat 644.908 kb on + strandat 644.909 kb on - strandat 644.909 kb on - strandat 645.013 kb on + strandat 645.013 kb on + strandat 645.013 kb on + strandat 645.406 kb on + strand, within ABZR87_RS19095at 645.406 kb on + strand, within ABZR87_RS19095at 645.406 kb on + strand, within ABZR87_RS19095at 645.406 kb on + strand, within ABZR87_RS19095at 645.407 kb on - strand, within ABZR87_RS19095at 645.407 kb on - strand, within ABZR87_RS19095at 645.407 kb on - strand, within ABZR87_RS19095at 645.640 kb on + strand, within ABZR87_RS19095at 645.640 kb on + strand, within ABZR87_RS19095at 645.640 kb on + strand, within ABZR87_RS19095at 645.641 kb on - strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.709 kb on + strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.710 kb on - strand, within ABZR87_RS19095at 645.739 kb on + strand, within ABZR87_RS19095at 646.195 kb on + strandat 646.233 kb on + strandat 646.234 kb on - strandat 646.279 kb on + strandat 646.279 kb on + strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.280 kb on - strandat 646.354 kb on + strandat 646.439 kb on - strand, within ABZR87_RS19100at 646.439 kb on - strand, within ABZR87_RS19100at 646.731 kb on + strandat 646.731 kb on + strandat 646.873 kb on - strandat 646.989 kb on + strand, within ABZR87_RS19105at 646.989 kb on + strand, within ABZR87_RS19105at 646.990 kb on - strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.097 kb on + strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.098 kb on - strand, within ABZR87_RS19105at 647.101 kb on - strand, within ABZR87_RS19105at 647.101 kb on - strand, within ABZR87_RS19105at 647.232 kb on + strand, within ABZR87_RS19105

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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643,961 + ABZR87_RS19085 0.65 -0.9
643,961 + ABZR87_RS19085 0.65 -0.3
643,961 + ABZR87_RS19085 0.65 +0.1
643,962 - ABZR87_RS19085 0.66 -0.4
643,962 - ABZR87_RS19085 0.66 -2.0
643,962 - ABZR87_RS19085 0.66 -0.3
644,010 + ABZR87_RS19085 0.72 -0.8
644,010 + ABZR87_RS19085 0.72 +0.9
644,011 - ABZR87_RS19085 0.72 -1.3
644,067 - ABZR87_RS19085 0.80 -0.3
644,883 + -0.4
644,883 + -2.9
644,884 - +2.0
644,908 + +0.8
644,909 - -1.4
644,909 - +0.6
645,013 + -2.1
645,013 + -0.9
645,013 + -0.9
645,406 + ABZR87_RS19095 0.37 -1.8
645,406 + ABZR87_RS19095 0.37 +0.6
645,406 + ABZR87_RS19095 0.37 -0.6
645,406 + ABZR87_RS19095 0.37 -1.7
645,407 - ABZR87_RS19095 0.37 -1.9
645,407 - ABZR87_RS19095 0.37 -1.4
645,407 - ABZR87_RS19095 0.37 -0.5
645,640 + ABZR87_RS19095 0.54 +0.8
645,640 + ABZR87_RS19095 0.54 +0.2
645,640 + ABZR87_RS19095 0.54 -1.7
645,641 - ABZR87_RS19095 0.54 -1.0
645,709 + ABZR87_RS19095 0.59 -1.9
645,709 + ABZR87_RS19095 0.59 -1.2
645,709 + ABZR87_RS19095 0.59 -1.8
645,709 + ABZR87_RS19095 0.59 -2.4
645,709 + ABZR87_RS19095 0.59 -1.7
645,709 + ABZR87_RS19095 0.59 -2.2
645,709 + ABZR87_RS19095 0.59 -0.7
645,709 + ABZR87_RS19095 0.59 +0.5
645,709 + ABZR87_RS19095 0.59 -1.2
645,710 - ABZR87_RS19095 0.59 -0.5
645,710 - ABZR87_RS19095 0.59 -1.7
645,710 - ABZR87_RS19095 0.59 +0.1
645,710 - ABZR87_RS19095 0.59 +0.7
645,710 - ABZR87_RS19095 0.59 +3.7
645,710 - ABZR87_RS19095 0.59 -0.8
645,739 + ABZR87_RS19095 0.61 -2.2
646,195 + -1.7
646,233 + -2.3
646,234 - -1.1
646,279 + -1.1
646,279 + -1.2
646,280 - +0.7
646,280 - +1.0
646,280 - +0.6
646,280 - -0.7
646,280 - -1.4
646,354 + -0.5
646,439 - ABZR87_RS19100 0.25 +0.2
646,439 - ABZR87_RS19100 0.25 -0.9
646,731 + -0.7
646,731 + -0.9
646,873 - -0.9
646,989 + ABZR87_RS19105 0.15 -1.5
646,989 + ABZR87_RS19105 0.15 -0.7
646,990 - ABZR87_RS19105 0.15 -0.9
647,097 + ABZR87_RS19105 0.22 -1.8
647,097 + ABZR87_RS19105 0.22 +2.0
647,097 + ABZR87_RS19105 0.22 -2.0
647,097 + ABZR87_RS19105 0.22 -2.7
647,098 - ABZR87_RS19105 0.22 +0.8
647,098 - ABZR87_RS19105 0.22 +0.6
647,098 - ABZR87_RS19105 0.22 -1.7
647,101 - ABZR87_RS19105 0.22 +0.2
647,101 - ABZR87_RS19105 0.22 +0.3
647,232 + ABZR87_RS19105 0.31 -0.7

Or see this region's nucleotide sequence