Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19030 and ABZR87_RS19035 are separated by 253 nucleotides ABZR87_RS19035 and ABZR87_RS19040 overlap by 14 nucleotides
ABZR87_RS19030: ABZR87_RS19030 - MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit, at 631,320 to 632,717
_RS19030
ABZR87_RS19035: ABZR87_RS19035 - response regulator, at 632,971 to 633,699
_RS19035
ABZR87_RS19040: ABZR87_RS19040 - ATP-binding protein, at 633,686 to 634,981
_RS19040
Position (kb) 632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 632.032 kb on + strand, within ABZR87_RS19030 at 632.033 kb on - strand, within ABZR87_RS19030 at 632.248 kb on + strand, within ABZR87_RS19030 at 632.248 kb on + strand, within ABZR87_RS19030 at 632.248 kb on + strand, within ABZR87_RS19030 at 632.248 kb on + strand, within ABZR87_RS19030 at 632.249 kb on - strand, within ABZR87_RS19030 at 632.249 kb on - strand, within ABZR87_RS19030 at 632.249 kb on - strand, within ABZR87_RS19030 at 632.249 kb on - strand, within ABZR87_RS19030 at 632.307 kb on - strand, within ABZR87_RS19030 at 632.519 kb on - strand, within ABZR87_RS19030 at 632.530 kb on + strand, within ABZR87_RS19030 at 632.663 kb on + strand at 632.735 kb on + strand at 632.736 kb on - strand at 632.736 kb on - strand at 632.736 kb on - strand at 632.742 kb on - strand at 632.742 kb on - strand at 632.742 kb on - strand at 632.742 kb on - strand at 632.763 kb on - strand at 632.794 kb on + strand at 632.794 kb on + strand at 632.794 kb on + strand at 632.837 kb on + strand at 632.837 kb on + strand at 632.837 kb on + strand at 632.837 kb on + strand at 632.838 kb on - strand at 632.838 kb on - strand at 632.838 kb on - strand at 632.840 kb on + strand at 632.840 kb on + strand at 632.840 kb on + strand at 632.840 kb on + strand at 632.841 kb on - strand at 632.850 kb on + strand at 632.884 kb on + strand at 632.884 kb on + strand at 632.884 kb on + strand at 632.884 kb on + strand at 632.884 kb on + strand at 632.884 kb on + strand at 632.885 kb on - strand at 632.885 kb on - strand at 632.885 kb on - strand at 632.925 kb on - strand at 632.925 kb on - strand at 632.925 kb on - strand at 632.950 kb on - strand at 633.034 kb on + strand at 633.035 kb on - strand at 633.271 kb on + strand, within ABZR87_RS19035 at 633.272 kb on - strand, within ABZR87_RS19035 at 633.533 kb on - strand, within ABZR87_RS19035 at 633.625 kb on + strand, within ABZR87_RS19035 at 633.626 kb on - strand, within ABZR87_RS19035 at 633.626 kb on - strand, within ABZR87_RS19035 at 633.627 kb on + strand at 633.628 kb on - strand at 633.638 kb on + strand at 633.652 kb on + strand at 633.653 kb on - strand at 633.697 kb on + strand at 633.832 kb on - strand, within ABZR87_RS19040 at 633.832 kb on - strand, within ABZR87_RS19040 at 633.959 kb on - strand, within ABZR87_RS19040 at 634.247 kb on + strand, within ABZR87_RS19040 at 634.247 kb on + strand, within ABZR87_RS19040 at 634.248 kb on - strand, within ABZR87_RS19040 at 634.248 kb on - strand, within ABZR87_RS19040 at 634.248 kb on - strand, within ABZR87_RS19040 at 634.278 kb on - strand, within ABZR87_RS19040 at 634.312 kb on + strand, within ABZR87_RS19040 at 634.312 kb on + strand, within ABZR87_RS19040 at 634.313 kb on - strand, within ABZR87_RS19040 at 634.499 kb on + strand, within ABZR87_RS19040 at 634.499 kb on + strand, within ABZR87_RS19040 at 634.500 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 632,032 + ABZR87_RS19030 0.51 +0.6 632,033 - ABZR87_RS19030 0.51 -1.2 632,248 + ABZR87_RS19030 0.66 -1.9 632,248 + ABZR87_RS19030 0.66 +0.4 632,248 + ABZR87_RS19030 0.66 +0.5 632,248 + ABZR87_RS19030 0.66 +0.1 632,249 - ABZR87_RS19030 0.66 -0.4 632,249 - ABZR87_RS19030 0.66 +1.0 632,249 - ABZR87_RS19030 0.66 -1.1 632,249 - ABZR87_RS19030 0.66 +1.4 632,307 - ABZR87_RS19030 0.71 +0.8 632,519 - ABZR87_RS19030 0.86 -2.7 632,530 + ABZR87_RS19030 0.87 -0.2 632,663 + -0.7 632,735 + -1.5 632,736 - -0.6 632,736 - -1.2 632,736 - +1.0 632,742 - +1.2 632,742 - +0.4 632,742 - +0.3 632,742 - +0.5 632,763 - +1.8 632,794 + +0.7 632,794 + -0.7 632,794 + +4.5 632,837 + +1.1 632,837 + +1.3 632,837 + -1.0 632,837 + -0.0 632,838 - +0.8 632,838 - +0.6 632,838 - -1.8 632,840 + -1.4 632,840 + -0.5 632,840 + +1.3 632,840 + -0.2 632,841 - +0.7 632,850 + +0.5 632,884 + -1.0 632,884 + -1.6 632,884 + +0.3 632,884 + +0.9 632,884 + -0.8 632,884 + +1.1 632,885 - -0.8 632,885 - +0.4 632,885 - -0.6 632,925 - +2.7 632,925 - +0.7 632,925 - +0.3 632,950 - -2.1 633,034 + -0.4 633,035 - +0.3 633,271 + ABZR87_RS19035 0.41 -0.3 633,272 - ABZR87_RS19035 0.41 -0.9 633,533 - ABZR87_RS19035 0.77 -2.0 633,625 + ABZR87_RS19035 0.90 +0.7 633,626 - ABZR87_RS19035 0.90 -1.3 633,626 - ABZR87_RS19035 0.90 -0.9 633,627 + -1.8 633,628 - +0.3 633,638 + +0.3 633,652 + -0.3 633,653 - -0.4 633,697 + -0.3 633,832 - ABZR87_RS19040 0.11 +0.1 633,832 - ABZR87_RS19040 0.11 -0.0 633,959 - ABZR87_RS19040 0.21 -0.4 634,247 + ABZR87_RS19040 0.43 +2.1 634,247 + ABZR87_RS19040 0.43 +0.4 634,248 - ABZR87_RS19040 0.43 -2.1 634,248 - ABZR87_RS19040 0.43 +0.3 634,248 - ABZR87_RS19040 0.43 +0.2 634,278 - ABZR87_RS19040 0.46 -0.1 634,312 + ABZR87_RS19040 0.48 -0.2 634,312 + ABZR87_RS19040 0.48 -0.4 634,313 - ABZR87_RS19040 0.48 +0.2 634,499 + ABZR87_RS19040 0.63 -0.5 634,499 + ABZR87_RS19040 0.63 -1.8 634,500 - ABZR87_RS19040 0.63 +0.4 634,686 - ABZR87_RS19040 0.77 +0.2 634,686 - ABZR87_RS19040 0.77 -1.1 634,686 - ABZR87_RS19040 0.77 -1.1
Or see this region's nucleotide sequence