Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18655 and ABZR87_RS18660 overlap by 4 nucleotides ABZR87_RS18660 and ABZR87_RS18665 are separated by 68 nucleotides
ABZR87_RS18655: ABZR87_RS18655 - carbohydrate kinase, at 538,005 to 538,952
_RS18655
ABZR87_RS18660: ABZR87_RS18660 - xylulokinase, at 538,949 to 540,457
_RS18660
ABZR87_RS18665: ABZR87_RS18665 - D-arabinitol 4-dehydrogenase, at 540,526 to 541,944
_RS18665
Position (kb) 538
539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 537.949 kb on + strand at 537.949 kb on + strand at 538.235 kb on + strand, within ABZR87_RS18655 at 538.236 kb on - strand, within ABZR87_RS18655 at 538.657 kb on + strand, within ABZR87_RS18655 at 538.657 kb on + strand, within ABZR87_RS18655 at 538.658 kb on - strand, within ABZR87_RS18655 at 538.721 kb on - strand, within ABZR87_RS18655 at 538.897 kb on + strand at 539.079 kb on + strand at 539.079 kb on + strand at 539.442 kb on + strand, within ABZR87_RS18660 at 539.442 kb on + strand, within ABZR87_RS18660 at 539.443 kb on - strand, within ABZR87_RS18660 at 539.443 kb on - strand, within ABZR87_RS18660 at 539.768 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.905 kb on + strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.906 kb on - strand, within ABZR87_RS18660 at 539.989 kb on - strand, within ABZR87_RS18660 at 539.989 kb on - strand, within ABZR87_RS18660 at 539.989 kb on - strand, within ABZR87_RS18660 at 540.360 kb on - strand at 540.453 kb on + strand at 540.453 kb on + strand at 540.453 kb on + strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.454 kb on - strand at 540.527 kb on + strand at 540.650 kb on + strand at 540.725 kb on + strand, within ABZR87_RS18665 at 540.725 kb on + strand, within ABZR87_RS18665 at 540.726 kb on - strand, within ABZR87_RS18665 at 540.936 kb on - strand, within ABZR87_RS18665 at 541.001 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.092 kb on + strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665 at 541.093 kb on - strand, within ABZR87_RS18665
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 537,949 + +1.0 537,949 + +2.0 538,235 + ABZR87_RS18655 0.24 -0.5 538,236 - ABZR87_RS18655 0.24 -0.4 538,657 + ABZR87_RS18655 0.69 +0.9 538,657 + ABZR87_RS18655 0.69 -1.4 538,658 - ABZR87_RS18655 0.69 +0.6 538,721 - ABZR87_RS18655 0.76 +0.3 538,897 + -1.0 539,079 + -1.0 539,079 + -0.2 539,442 + ABZR87_RS18660 0.33 -0.1 539,442 + ABZR87_RS18660 0.33 +0.9 539,443 - ABZR87_RS18660 0.33 +1.0 539,443 - ABZR87_RS18660 0.33 -0.9 539,768 + ABZR87_RS18660 0.54 -1.9 539,905 + ABZR87_RS18660 0.63 +2.6 539,905 + ABZR87_RS18660 0.63 -0.5 539,905 + ABZR87_RS18660 0.63 +0.5 539,905 + ABZR87_RS18660 0.63 +0.5 539,905 + ABZR87_RS18660 0.63 +0.1 539,906 - ABZR87_RS18660 0.63 -1.1 539,906 - ABZR87_RS18660 0.63 +0.3 539,906 - ABZR87_RS18660 0.63 -0.5 539,906 - ABZR87_RS18660 0.63 -0.7 539,989 - ABZR87_RS18660 0.69 +1.7 539,989 - ABZR87_RS18660 0.69 +0.3 539,989 - ABZR87_RS18660 0.69 -0.3 540,360 - -0.2 540,453 + -0.7 540,453 + -0.0 540,453 + +0.7 540,454 - -0.9 540,454 - -0.5 540,454 - -0.7 540,454 - -0.8 540,454 - +0.1 540,527 + +0.6 540,650 + +0.8 540,725 + ABZR87_RS18665 0.14 +0.3 540,725 + ABZR87_RS18665 0.14 -1.0 540,726 - ABZR87_RS18665 0.14 +0.8 540,936 - ABZR87_RS18665 0.29 +1.3 541,001 + ABZR87_RS18665 0.33 -0.4 541,092 + ABZR87_RS18665 0.40 +0.0 541,092 + ABZR87_RS18665 0.40 -2.8 541,092 + ABZR87_RS18665 0.40 -1.5 541,092 + ABZR87_RS18665 0.40 -1.6 541,092 + ABZR87_RS18665 0.40 -0.2 541,093 - ABZR87_RS18665 0.40 +4.8 541,093 - ABZR87_RS18665 0.40 -0.4 541,093 - ABZR87_RS18665 0.40 -1.7 541,093 - ABZR87_RS18665 0.40 -1.7 541,093 - ABZR87_RS18665 0.40 -0.5 541,093 - ABZR87_RS18665 0.40 -0.9
Or see this region's nucleotide sequence