Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18450 and ABZR87_RS18455 overlap by 8 nucleotides ABZR87_RS18455 and ABZR87_RS18460 are separated by 23 nucleotides ABZR87_RS18460 and ABZR87_RS18465 are separated by 12 nucleotides
ABZR87_RS18450: ABZR87_RS18450 - CoA transferase, at 499,425 to 500,651
_RS18450
ABZR87_RS18455: ABZR87_RS18455 - shikimate dehydrogenase, at 500,644 to 501,477
_RS18455
ABZR87_RS18460: ABZR87_RS18460 - type II 3-dehydroquinate dehydratase, at 501,501 to 501,944
_RS18460
ABZR87_RS18465: ABZR87_RS18465 - YdeI/OmpD-associated family protein, at 501,957 to 502,526
_RS18465
Position (kb) 500
501
502 Strain fitness (log2 ratio) -2
-1
0
1
2 at 499.716 kb on + strand, within ABZR87_RS18450 at 499.717 kb on - strand, within ABZR87_RS18450 at 499.753 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.789 kb on - strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.938 kb on + strand, within ABZR87_RS18450 at 499.939 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.029 kb on - strand, within ABZR87_RS18450 at 500.055 kb on + strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.056 kb on - strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.070 kb on + strand, within ABZR87_RS18450 at 500.071 kb on - strand, within ABZR87_RS18450 at 500.130 kb on + strand, within ABZR87_RS18450 at 500.131 kb on - strand, within ABZR87_RS18450 at 500.626 kb on - strand at 500.626 kb on - strand at 500.657 kb on - strand at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.743 kb on + strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 500.744 kb on - strand, within ABZR87_RS18455 at 501.175 kb on + strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.293 kb on - strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.304 kb on + strand, within ABZR87_RS18455 at 501.305 kb on - strand, within ABZR87_RS18455 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.745 kb on - strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.750 kb on + strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.751 kb on - strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.803 kb on + strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.804 kb on - strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.847 kb on + strand, within ABZR87_RS18460 at 501.848 kb on - strand, within ABZR87_RS18460 at 501.897 kb on + strand, within ABZR87_RS18460 at 501.898 kb on - strand, within ABZR87_RS18460 at 501.943 kb on - strand at 502.080 kb on + strand, within ABZR87_RS18465 at 502.080 kb on + strand, within ABZR87_RS18465 at 502.168 kb on + strand, within ABZR87_RS18465 at 502.169 kb on - strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.324 kb on + strand, within ABZR87_RS18465 at 502.325 kb on - strand, within ABZR87_RS18465 at 502.366 kb on + strand, within ABZR87_RS18465 at 502.367 kb on - strand, within ABZR87_RS18465 at 502.396 kb on + strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465 at 502.397 kb on - strand, within ABZR87_RS18465
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 499,716 + ABZR87_RS18450 0.24 +1.9 499,717 - ABZR87_RS18450 0.24 -0.1 499,753 - ABZR87_RS18450 0.27 -0.2 499,789 - ABZR87_RS18450 0.30 -0.9 499,789 - ABZR87_RS18450 0.30 +0.6 499,938 + ABZR87_RS18450 0.42 +1.9 499,938 + ABZR87_RS18450 0.42 +0.7 499,938 + ABZR87_RS18450 0.42 -0.4 499,938 + ABZR87_RS18450 0.42 +0.5 499,939 - ABZR87_RS18450 0.42 +2.1 500,029 - ABZR87_RS18450 0.49 -0.5 500,029 - ABZR87_RS18450 0.49 +0.3 500,055 + ABZR87_RS18450 0.51 -1.3 500,056 - ABZR87_RS18450 0.51 -1.2 500,056 - ABZR87_RS18450 0.51 -0.5 500,070 + ABZR87_RS18450 0.53 +1.0 500,070 + ABZR87_RS18450 0.53 -0.6 500,070 + ABZR87_RS18450 0.53 -0.5 500,071 - ABZR87_RS18450 0.53 +2.3 500,130 + ABZR87_RS18450 0.57 -2.0 500,131 - ABZR87_RS18450 0.58 -0.9 500,626 - -0.8 500,626 - -0.2 500,657 - +1.3 500,743 + ABZR87_RS18455 0.12 +2.4 500,743 + ABZR87_RS18455 0.12 -0.2 500,743 + ABZR87_RS18455 0.12 +0.0 500,744 - ABZR87_RS18455 0.12 -0.5 500,744 - ABZR87_RS18455 0.12 -1.3 501,175 + ABZR87_RS18455 0.64 -0.2 501,293 - ABZR87_RS18455 0.78 +0.1 501,293 - ABZR87_RS18455 0.78 +0.4 501,304 + ABZR87_RS18455 0.79 +0.7 501,304 + ABZR87_RS18455 0.79 -0.3 501,305 - ABZR87_RS18455 0.79 -0.2 501,745 - ABZR87_RS18460 0.55 +1.2 501,745 - ABZR87_RS18460 0.55 -1.1 501,745 - ABZR87_RS18460 0.55 -0.8 501,750 + ABZR87_RS18460 0.56 -0.9 501,750 + ABZR87_RS18460 0.56 -0.1 501,751 - ABZR87_RS18460 0.56 +0.1 501,751 - ABZR87_RS18460 0.56 +1.2 501,803 + ABZR87_RS18460 0.68 +0.8 501,803 + ABZR87_RS18460 0.68 -2.3 501,803 + ABZR87_RS18460 0.68 -0.7 501,803 + ABZR87_RS18460 0.68 -0.2 501,803 + ABZR87_RS18460 0.68 +0.1 501,803 + ABZR87_RS18460 0.68 +0.7 501,803 + ABZR87_RS18460 0.68 +0.1 501,804 - ABZR87_RS18460 0.68 -0.1 501,804 - ABZR87_RS18460 0.68 +2.0 501,804 - ABZR87_RS18460 0.68 +0.0 501,804 - ABZR87_RS18460 0.68 +1.6 501,804 - ABZR87_RS18460 0.68 +1.3 501,804 - ABZR87_RS18460 0.68 -2.0 501,804 - ABZR87_RS18460 0.68 -0.7 501,847 + ABZR87_RS18460 0.78 -0.6 501,847 + ABZR87_RS18460 0.78 -0.3 501,847 + ABZR87_RS18460 0.78 +1.7 501,848 - ABZR87_RS18460 0.78 +1.6 501,897 + ABZR87_RS18460 0.89 -0.5 501,898 - ABZR87_RS18460 0.89 +0.6 501,943 - -0.4 502,080 + ABZR87_RS18465 0.22 -2.1 502,080 + ABZR87_RS18465 0.22 -2.3 502,168 + ABZR87_RS18465 0.37 -1.2 502,169 - ABZR87_RS18465 0.37 -1.5 502,324 + ABZR87_RS18465 0.64 +1.2 502,324 + ABZR87_RS18465 0.64 +0.0 502,325 - ABZR87_RS18465 0.65 -0.7 502,366 + ABZR87_RS18465 0.72 +2.6 502,367 - ABZR87_RS18465 0.72 -0.8 502,396 + ABZR87_RS18465 0.77 -0.4 502,397 - ABZR87_RS18465 0.77 +1.3 502,397 - ABZR87_RS18465 0.77 -0.9
Or see this region's nucleotide sequence