Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17500 and ABZR87_RS17505 overlap by 4 nucleotides ABZR87_RS17505 and ABZR87_RS17510 are separated by 5 nucleotides
ABZR87_RS17500: ABZR87_RS17500 - molybdopterin cofactor-binding domain-containing protein, at 287,410 to 290,244
_RS17500
ABZR87_RS17505: ABZR87_RS17505 - (2Fe-2S)-binding protein, at 290,241 to 290,801
_RS17505
ABZR87_RS17510: ABZR87_RS17510 - cytochrome c, at 290,807 to 292,087
_RS17510
Position (kb) 290
291 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 289.258 kb on + strand, within ABZR87_RS17500 at 289.259 kb on - strand, within ABZR87_RS17500 at 289.259 kb on - strand, within ABZR87_RS17500 at 289.259 kb on - strand, within ABZR87_RS17500 at 289.318 kb on + strand, within ABZR87_RS17500 at 289.319 kb on - strand, within ABZR87_RS17500 at 289.351 kb on + strand, within ABZR87_RS17500 at 289.354 kb on + strand, within ABZR87_RS17500 at 289.354 kb on + strand, within ABZR87_RS17500 at 289.354 kb on + strand, within ABZR87_RS17500 at 289.355 kb on - strand, within ABZR87_RS17500 at 289.355 kb on - strand, within ABZR87_RS17500 at 289.537 kb on + strand, within ABZR87_RS17500 at 289.537 kb on + strand, within ABZR87_RS17500 at 289.537 kb on + strand, within ABZR87_RS17500 at 289.538 kb on - strand, within ABZR87_RS17500 at 289.738 kb on + strand, within ABZR87_RS17500 at 289.765 kb on + strand, within ABZR87_RS17500 at 289.765 kb on + strand, within ABZR87_RS17500 at 289.765 kb on + strand, within ABZR87_RS17500 at 289.765 kb on + strand, within ABZR87_RS17500 at 289.766 kb on - strand, within ABZR87_RS17500 at 289.766 kb on - strand, within ABZR87_RS17500 at 289.807 kb on + strand, within ABZR87_RS17500 at 289.807 kb on + strand, within ABZR87_RS17500 at 289.807 kb on + strand, within ABZR87_RS17500 at 289.808 kb on - strand, within ABZR87_RS17500 at 289.808 kb on - strand, within ABZR87_RS17500 at 289.907 kb on + strand, within ABZR87_RS17500 at 289.991 kb on - strand at 290.033 kb on - strand at 290.033 kb on - strand at 290.249 kb on + strand at 290.249 kb on + strand at 290.249 kb on + strand at 290.249 kb on + strand at 290.250 kb on - strand at 290.250 kb on - strand at 290.282 kb on + strand at 290.283 kb on - strand at 290.283 kb on - strand at 290.285 kb on - strand at 290.352 kb on + strand, within ABZR87_RS17505 at 290.352 kb on + strand, within ABZR87_RS17505 at 290.353 kb on - strand, within ABZR87_RS17505 at 290.598 kb on + strand, within ABZR87_RS17505 at 290.731 kb on - strand, within ABZR87_RS17505 at 290.826 kb on + strand at 291.075 kb on - strand, within ABZR87_RS17510 at 291.075 kb on - strand, within ABZR87_RS17510 at 291.137 kb on + strand, within ABZR87_RS17510 at 291.194 kb on + strand, within ABZR87_RS17510 at 291.194 kb on + strand, within ABZR87_RS17510 at 291.195 kb on - strand, within ABZR87_RS17510 at 291.203 kb on + strand, within ABZR87_RS17510 at 291.204 kb on - strand, within ABZR87_RS17510 at 291.239 kb on + strand, within ABZR87_RS17510 at 291.240 kb on - strand, within ABZR87_RS17510 at 291.240 kb on - strand, within ABZR87_RS17510 at 291.240 kb on - strand, within ABZR87_RS17510 at 291.246 kb on - strand, within ABZR87_RS17510 at 291.308 kb on + strand, within ABZR87_RS17510 at 291.308 kb on + strand, within ABZR87_RS17510 at 291.309 kb on - strand, within ABZR87_RS17510 at 291.309 kb on - strand, within ABZR87_RS17510 at 291.632 kb on + strand, within ABZR87_RS17510 at 291.633 kb on - strand, within ABZR87_RS17510 at 291.633 kb on - strand, within ABZR87_RS17510 at 291.659 kb on + strand, within ABZR87_RS17510 at 291.695 kb on + strand, within ABZR87_RS17510 at 291.695 kb on + strand, within ABZR87_RS17510 at 291.695 kb on + strand, within ABZR87_RS17510 at 291.695 kb on + strand, within ABZR87_RS17510 at 291.696 kb on - strand, within ABZR87_RS17510 at 291.696 kb on - strand, within ABZR87_RS17510 at 291.696 kb on - strand, within ABZR87_RS17510 at 291.696 kb on - strand, within ABZR87_RS17510 at 291.696 kb on - strand, within ABZR87_RS17510 at 291.791 kb on + strand, within ABZR87_RS17510 at 291.791 kb on + strand, within ABZR87_RS17510 at 291.791 kb on + strand, within ABZR87_RS17510
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 289,258 + ABZR87_RS17500 0.65 -1.1 289,259 - ABZR87_RS17500 0.65 +1.3 289,259 - ABZR87_RS17500 0.65 -0.4 289,259 - ABZR87_RS17500 0.65 +0.6 289,318 + ABZR87_RS17500 0.67 +0.8 289,319 - ABZR87_RS17500 0.67 -1.6 289,351 + ABZR87_RS17500 0.68 -0.1 289,354 + ABZR87_RS17500 0.69 -1.8 289,354 + ABZR87_RS17500 0.69 +0.1 289,354 + ABZR87_RS17500 0.69 -1.6 289,355 - ABZR87_RS17500 0.69 -0.7 289,355 - ABZR87_RS17500 0.69 -0.1 289,537 + ABZR87_RS17500 0.75 -0.3 289,537 + ABZR87_RS17500 0.75 +1.9 289,537 + ABZR87_RS17500 0.75 -0.4 289,538 - ABZR87_RS17500 0.75 -0.4 289,738 + ABZR87_RS17500 0.82 +0.4 289,765 + ABZR87_RS17500 0.83 +0.5 289,765 + ABZR87_RS17500 0.83 -0.3 289,765 + ABZR87_RS17500 0.83 +0.8 289,765 + ABZR87_RS17500 0.83 -0.1 289,766 - ABZR87_RS17500 0.83 -1.0 289,766 - ABZR87_RS17500 0.83 -0.2 289,807 + ABZR87_RS17500 0.85 -0.6 289,807 + ABZR87_RS17500 0.85 +0.4 289,807 + ABZR87_RS17500 0.85 -0.7 289,808 - ABZR87_RS17500 0.85 -1.7 289,808 - ABZR87_RS17500 0.85 -1.9 289,907 + ABZR87_RS17500 0.88 -0.9 289,991 - -0.1 290,033 - +1.3 290,033 - -0.1 290,249 + +0.0 290,249 + -0.9 290,249 + -1.3 290,249 + +1.3 290,250 - -1.5 290,250 - +0.3 290,282 + -1.9 290,283 - -1.2 290,283 - -1.2 290,285 - -0.2 290,352 + ABZR87_RS17505 0.20 -2.2 290,352 + ABZR87_RS17505 0.20 +0.1 290,353 - ABZR87_RS17505 0.20 -1.2 290,598 + ABZR87_RS17505 0.64 -1.0 290,731 - ABZR87_RS17505 0.87 -0.7 290,826 + -0.4 291,075 - ABZR87_RS17510 0.21 +1.4 291,075 - ABZR87_RS17510 0.21 +0.7 291,137 + ABZR87_RS17510 0.26 -0.6 291,194 + ABZR87_RS17510 0.30 +4.1 291,194 + ABZR87_RS17510 0.30 -0.1 291,195 - ABZR87_RS17510 0.30 -0.2 291,203 + ABZR87_RS17510 0.31 +0.8 291,204 - ABZR87_RS17510 0.31 -0.5 291,239 + ABZR87_RS17510 0.34 +0.1 291,240 - ABZR87_RS17510 0.34 +1.1 291,240 - ABZR87_RS17510 0.34 +2.5 291,240 - ABZR87_RS17510 0.34 +0.8 291,246 - ABZR87_RS17510 0.34 -0.1 291,308 + ABZR87_RS17510 0.39 +0.4 291,308 + ABZR87_RS17510 0.39 +0.9 291,309 - ABZR87_RS17510 0.39 -0.2 291,309 - ABZR87_RS17510 0.39 -0.7 291,632 + ABZR87_RS17510 0.64 -1.5 291,633 - ABZR87_RS17510 0.64 +0.4 291,633 - ABZR87_RS17510 0.64 -0.9 291,659 + ABZR87_RS17510 0.67 -1.4 291,695 + ABZR87_RS17510 0.69 +1.2 291,695 + ABZR87_RS17510 0.69 +0.3 291,695 + ABZR87_RS17510 0.69 -0.0 291,695 + ABZR87_RS17510 0.69 +1.3 291,696 - ABZR87_RS17510 0.69 +0.2 291,696 - ABZR87_RS17510 0.69 +3.5 291,696 - ABZR87_RS17510 0.69 -0.6 291,696 - ABZR87_RS17510 0.69 +1.7 291,696 - ABZR87_RS17510 0.69 +0.5 291,791 + ABZR87_RS17510 0.77 +0.1 291,791 + ABZR87_RS17510 0.77 -0.5 291,791 + ABZR87_RS17510 0.77 +0.7
Or see this region's nucleotide sequence