Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17095

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17090 and ABZR87_RS17095 are separated by 2 nucleotidesABZR87_RS17095 and ABZR87_RS17100 are separated by 47 nucleotidesABZR87_RS17100 and ABZR87_RS17105 are separated by 37 nucleotides ABZR87_RS17090: ABZR87_RS17090 - TolC family protein, at 180,725 to 182,134 _RS17090 ABZR87_RS17095: ABZR87_RS17095 - copper oxidase, at 182,137 to 183,435 _RS17095 ABZR87_RS17100: ABZR87_RS17100 - cupredoxin family protein, at 183,483 to 183,971 _RS17100 ABZR87_RS17105: ABZR87_RS17105 - copper-binding protein, at 184,009 to 184,329 _RS17105 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 181.170 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.243 kb on + strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.275 kb on - strand, within ABZR87_RS17090at 181.275 kb on - strand, within ABZR87_RS17090at 181.383 kb on - strand, within ABZR87_RS17090at 181.512 kb on + strand, within ABZR87_RS17090at 181.513 kb on - strand, within ABZR87_RS17090at 181.513 kb on - strand, within ABZR87_RS17090at 181.550 kb on + strand, within ABZR87_RS17090at 181.550 kb on + strand, within ABZR87_RS17090at 181.550 kb on + strand, within ABZR87_RS17090at 181.551 kb on - strand, within ABZR87_RS17090at 181.664 kb on + strand, within ABZR87_RS17090at 181.665 kb on - strand, within ABZR87_RS17090at 181.665 kb on - strand, within ABZR87_RS17090at 181.775 kb on + strand, within ABZR87_RS17090at 181.776 kb on - strand, within ABZR87_RS17090at 181.776 kb on - strand, within ABZR87_RS17090at 181.776 kb on - strand, within ABZR87_RS17090at 181.841 kb on + strand, within ABZR87_RS17090at 181.842 kb on - strand, within ABZR87_RS17090at 181.842 kb on - strand, within ABZR87_RS17090at 181.842 kb on - strand, within ABZR87_RS17090at 181.850 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.862 kb on + strand, within ABZR87_RS17090at 181.863 kb on - strand, within ABZR87_RS17090at 181.863 kb on - strand, within ABZR87_RS17090at 181.929 kb on + strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.930 kb on - strand, within ABZR87_RS17090at 181.937 kb on + strand, within ABZR87_RS17090at 181.937 kb on + strand, within ABZR87_RS17090at 181.938 kb on - strand, within ABZR87_RS17090at 181.938 kb on - strand, within ABZR87_RS17090at 182.010 kb on - strandat 182.290 kb on + strand, within ABZR87_RS17095at 182.291 kb on - strand, within ABZR87_RS17095at 182.422 kb on + strand, within ABZR87_RS17095at 182.422 kb on + strand, within ABZR87_RS17095at 182.423 kb on - strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.605 kb on + strand, within ABZR87_RS17095at 182.606 kb on - strand, within ABZR87_RS17095at 182.641 kb on + strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.642 kb on - strand, within ABZR87_RS17095at 182.765 kb on - strand, within ABZR87_RS17095at 182.765 kb on - strand, within ABZR87_RS17095at 182.785 kb on + strand, within ABZR87_RS17095at 182.786 kb on - strand, within ABZR87_RS17095at 182.786 kb on - strand, within ABZR87_RS17095at 182.786 kb on - strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 182.946 kb on + strand, within ABZR87_RS17095at 183.193 kb on + strand, within ABZR87_RS17095at 183.193 kb on + strand, within ABZR87_RS17095at 183.193 kb on + strand, within ABZR87_RS17095at 183.193 kb on + strand, within ABZR87_RS17095at 183.193 kb on + strand, within ABZR87_RS17095at 183.194 kb on - strand, within ABZR87_RS17095at 183.194 kb on - strand, within ABZR87_RS17095at 183.194 kb on - strand, within ABZR87_RS17095at 183.194 kb on - strand, within ABZR87_RS17095at 183.194 kb on - strand, within ABZR87_RS17095at 183.359 kb on - strandat 183.359 kb on - strandat 183.359 kb on - strandat 183.359 kb on - strandat 183.359 kb on - strandat 183.376 kb on + strandat 183.376 kb on + strandat 183.377 kb on - strandat 183.377 kb on - strandat 183.403 kb on + strandat 183.409 kb on + strandat 183.410 kb on - strandat 183.410 kb on - strandat 183.410 kb on - strandat 183.410 kb on - strandat 183.410 kb on - strandat 183.459 kb on - strandat 183.459 kb on - strandat 183.468 kb on - strandat 183.468 kb on - strandat 183.468 kb on - strandat 183.468 kb on - strandat 183.665 kb on + strand, within ABZR87_RS17100at 183.665 kb on + strand, within ABZR87_RS17100at 183.666 kb on - strand, within ABZR87_RS17100at 183.733 kb on + strand, within ABZR87_RS17100at 183.838 kb on + strand, within ABZR87_RS17100at 183.839 kb on - strand, within ABZR87_RS17100at 183.839 kb on - strand, within ABZR87_RS17100at 184.029 kb on - strandat 184.250 kb on + strand, within ABZR87_RS17105at 184.250 kb on + strand, within ABZR87_RS17105at 184.251 kb on - strand, within ABZR87_RS17105at 184.251 kb on - strand, within ABZR87_RS17105at 184.275 kb on + strand, within ABZR87_RS17105at 184.276 kb on - strand, within ABZR87_RS17105at 184.276 kb on - strand, within ABZR87_RS17105at 184.308 kb on - strandat 184.327 kb on + strandat 184.327 kb on + strandat 184.328 kb on - strandat 184.328 kb on - strandat 184.367 kb on - strandat 184.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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181,170 - ABZR87_RS17090 0.32 -0.6
181,239 - ABZR87_RS17090 0.36 -0.9
181,239 - ABZR87_RS17090 0.36 -0.5
181,239 - ABZR87_RS17090 0.36 -1.0
181,239 - ABZR87_RS17090 0.36 +0.9
181,243 + ABZR87_RS17090 0.37 +0.5
181,244 - ABZR87_RS17090 0.37 -0.9
181,244 - ABZR87_RS17090 0.37 +0.9
181,244 - ABZR87_RS17090 0.37 -0.2
181,275 - ABZR87_RS17090 0.39 -0.1
181,275 - ABZR87_RS17090 0.39 -1.0
181,383 - ABZR87_RS17090 0.47 +1.5
181,512 + ABZR87_RS17090 0.56 -0.9
181,513 - ABZR87_RS17090 0.56 +0.3
181,513 - ABZR87_RS17090 0.56 -0.6
181,550 + ABZR87_RS17090 0.59 -0.2
181,550 + ABZR87_RS17090 0.59 +0.2
181,550 + ABZR87_RS17090 0.59 +0.8
181,551 - ABZR87_RS17090 0.59 -0.7
181,664 + ABZR87_RS17090 0.67 +0.3
181,665 - ABZR87_RS17090 0.67 -0.8
181,665 - ABZR87_RS17090 0.67 -0.1
181,775 + ABZR87_RS17090 0.74 +1.1
181,776 - ABZR87_RS17090 0.75 +0.7
181,776 - ABZR87_RS17090 0.75 +3.0
181,776 - ABZR87_RS17090 0.75 +1.2
181,841 + ABZR87_RS17090 0.79 -1.7
181,842 - ABZR87_RS17090 0.79 +0.1
181,842 - ABZR87_RS17090 0.79 -0.4
181,842 - ABZR87_RS17090 0.79 +0.9
181,850 + ABZR87_RS17090 0.80 -0.1
181,862 + ABZR87_RS17090 0.81 -0.8
181,862 + ABZR87_RS17090 0.81 -0.0
181,862 + ABZR87_RS17090 0.81 +1.0
181,862 + ABZR87_RS17090 0.81 +0.7
181,862 + ABZR87_RS17090 0.81 -0.2
181,863 - ABZR87_RS17090 0.81 +0.9
181,863 - ABZR87_RS17090 0.81 +0.5
181,929 + ABZR87_RS17090 0.85 +0.3
181,930 - ABZR87_RS17090 0.85 -0.6
181,930 - ABZR87_RS17090 0.85 -0.4
181,930 - ABZR87_RS17090 0.85 -0.9
181,930 - ABZR87_RS17090 0.85 -0.5
181,937 + ABZR87_RS17090 0.86 +1.0
181,937 + ABZR87_RS17090 0.86 -0.6
181,938 - ABZR87_RS17090 0.86 -0.5
181,938 - ABZR87_RS17090 0.86 +1.3
182,010 - +0.9
182,290 + ABZR87_RS17095 0.12 +1.3
182,291 - ABZR87_RS17095 0.12 -0.0
182,422 + ABZR87_RS17095 0.22 +0.8
182,422 + ABZR87_RS17095 0.22 -0.3
182,423 - ABZR87_RS17095 0.22 +2.3
182,605 + ABZR87_RS17095 0.36 -0.6
182,605 + ABZR87_RS17095 0.36 -2.2
182,605 + ABZR87_RS17095 0.36 +1.9
182,605 + ABZR87_RS17095 0.36 -0.4
182,606 - ABZR87_RS17095 0.36 +1.7
182,641 + ABZR87_RS17095 0.39 -1.8
182,642 - ABZR87_RS17095 0.39 -0.4
182,642 - ABZR87_RS17095 0.39 -0.7
182,642 - ABZR87_RS17095 0.39 +0.3
182,642 - ABZR87_RS17095 0.39 +0.2
182,642 - ABZR87_RS17095 0.39 -0.0
182,642 - ABZR87_RS17095 0.39 -1.1
182,765 - ABZR87_RS17095 0.48 +1.7
182,765 - ABZR87_RS17095 0.48 +0.0
182,785 + ABZR87_RS17095 0.50 +0.3
182,786 - ABZR87_RS17095 0.50 -0.1
182,786 - ABZR87_RS17095 0.50 -0.9
182,786 - ABZR87_RS17095 0.50 -1.5
182,946 + ABZR87_RS17095 0.62 -0.5
182,946 + ABZR87_RS17095 0.62 +2.1
182,946 + ABZR87_RS17095 0.62 -1.2
182,946 + ABZR87_RS17095 0.62 +2.2
183,193 + ABZR87_RS17095 0.81 -1.2
183,193 + ABZR87_RS17095 0.81 +3.5
183,193 + ABZR87_RS17095 0.81 +0.0
183,193 + ABZR87_RS17095 0.81 -2.3
183,193 + ABZR87_RS17095 0.81 +0.5
183,194 - ABZR87_RS17095 0.81 +0.5
183,194 - ABZR87_RS17095 0.81 +1.4
183,194 - ABZR87_RS17095 0.81 -1.7
183,194 - ABZR87_RS17095 0.81 +0.5
183,194 - ABZR87_RS17095 0.81 -0.8
183,359 - +1.1
183,359 - -0.6
183,359 - +1.1
183,359 - -0.8
183,359 - +1.5
183,376 + -0.5
183,376 + -0.2
183,377 - -1.8
183,377 - -1.7
183,403 + +0.4
183,409 + -1.7
183,410 - -1.1
183,410 - +0.2
183,410 - -1.5
183,410 - -0.8
183,410 - +1.3
183,459 - +0.6
183,459 - -0.1
183,468 - -0.3
183,468 - -0.5
183,468 - -2.6
183,468 - -1.2
183,665 + ABZR87_RS17100 0.37 -0.3
183,665 + ABZR87_RS17100 0.37 -0.2
183,666 - ABZR87_RS17100 0.37 -0.0
183,733 + ABZR87_RS17100 0.51 +1.5
183,838 + ABZR87_RS17100 0.73 +2.0
183,839 - ABZR87_RS17100 0.73 +0.4
183,839 - ABZR87_RS17100 0.73 -0.4
184,029 - +0.2
184,250 + ABZR87_RS17105 0.75 -0.9
184,250 + ABZR87_RS17105 0.75 +1.0
184,251 - ABZR87_RS17105 0.75 -1.2
184,251 - ABZR87_RS17105 0.75 -0.9
184,275 + ABZR87_RS17105 0.83 -0.8
184,276 - ABZR87_RS17105 0.83 +0.7
184,276 - ABZR87_RS17105 0.83 +0.7
184,308 - +0.1
184,327 + +0.7
184,327 + -2.8
184,328 - +0.7
184,328 - -1.4
184,367 - -0.8
184,367 - +0.4

Or see this region's nucleotide sequence