Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17080

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17070 and ABZR87_RS17075 are separated by 160 nucleotidesABZR87_RS17075 and ABZR87_RS17080 are separated by 172 nucleotidesABZR87_RS17080 and ABZR87_RS17085 are separated by 96 nucleotidesABZR87_RS17085 and ABZR87_RS17090 are separated by 9 nucleotides ABZR87_RS17070: ABZR87_RS17070 - alpha/beta hydrolase, at 178,221 to 179,030 _RS17070 ABZR87_RS17075: ABZR87_RS17075 - acyl-CoA thioesterase, at 179,191 to 179,694 _RS17075 ABZR87_RS17080: ABZR87_RS17080 - DUF2946 family protein, at 179,867 to 180,262 _RS17080 ABZR87_RS17085: ABZR87_RS17085 - hypothetical protein, at 180,359 to 180,715 _RS17085 ABZR87_RS17090: ABZR87_RS17090 - TolC family protein, at 180,725 to 182,134 _RS17090 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.900 kb on - strand, within ABZR87_RS17070at 178.900 kb on - strand, within ABZR87_RS17070at 178.900 kb on - strand, within ABZR87_RS17070at 179.028 kb on + strandat 179.073 kb on + strandat 179.074 kb on - strandat 179.085 kb on + strandat 179.085 kb on + strandat 179.137 kb on + strandat 179.137 kb on + strandat 179.138 kb on - strandat 179.192 kb on + strandat 179.193 kb on - strandat 179.193 kb on - strandat 179.193 kb on - strandat 179.216 kb on + strandat 179.217 kb on - strandat 179.217 kb on - strandat 179.375 kb on + strand, within ABZR87_RS17075at 179.376 kb on - strand, within ABZR87_RS17075at 179.376 kb on - strand, within ABZR87_RS17075at 179.376 kb on - strand, within ABZR87_RS17075at 179.388 kb on + strand, within ABZR87_RS17075at 179.388 kb on + strand, within ABZR87_RS17075at 179.388 kb on + strand, within ABZR87_RS17075at 179.462 kb on + strand, within ABZR87_RS17075at 179.462 kb on + strand, within ABZR87_RS17075at 179.462 kb on + strand, within ABZR87_RS17075at 179.463 kb on - strand, within ABZR87_RS17075at 179.463 kb on - strand, within ABZR87_RS17075at 179.463 kb on - strand, within ABZR87_RS17075at 179.550 kb on - strand, within ABZR87_RS17075at 179.550 kb on - strand, within ABZR87_RS17075at 179.579 kb on + strand, within ABZR87_RS17075at 179.579 kb on + strand, within ABZR87_RS17075at 179.580 kb on - strand, within ABZR87_RS17075at 179.580 kb on - strand, within ABZR87_RS17075at 179.580 kb on - strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.688 kb on + strandat 179.689 kb on - strandat 179.689 kb on - strandat 179.689 kb on - strandat 179.819 kb on - strandat 179.823 kb on + strandat 179.823 kb on + strandat 179.823 kb on + strandat 179.824 kb on - strandat 180.008 kb on - strand, within ABZR87_RS17080at 180.015 kb on + strand, within ABZR87_RS17080at 180.280 kb on + strandat 180.280 kb on + strandat 180.280 kb on + strandat 180.280 kb on + strandat 180.281 kb on - strandat 180.281 kb on - strandat 180.330 kb on + strandat 180.330 kb on + strandat 180.331 kb on - strandat 180.331 kb on - strandat 180.382 kb on - strandat 180.417 kb on + strand, within ABZR87_RS17085at 180.536 kb on + strand, within ABZR87_RS17085at 180.537 kb on - strand, within ABZR87_RS17085at 180.537 kb on - strand, within ABZR87_RS17085at 180.546 kb on - strand, within ABZR87_RS17085at 180.820 kb on + strandat 180.821 kb on - strandat 180.966 kb on + strand, within ABZR87_RS17090at 180.995 kb on + strand, within ABZR87_RS17090at 180.995 kb on + strand, within ABZR87_RS17090at 180.995 kb on + strand, within ABZR87_RS17090at 181.170 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.239 kb on - strand, within ABZR87_RS17090at 181.243 kb on + strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090at 181.244 kb on - strand, within ABZR87_RS17090

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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178,899 + ABZR87_RS17070 0.84 -0.0
178,899 + ABZR87_RS17070 0.84 -0.5
178,899 + ABZR87_RS17070 0.84 +0.1
178,899 + ABZR87_RS17070 0.84 +0.3
178,899 + ABZR87_RS17070 0.84 +0.1
178,900 - ABZR87_RS17070 0.84 +0.7
178,900 - ABZR87_RS17070 0.84 +0.3
178,900 - ABZR87_RS17070 0.84 +0.3
179,028 + +1.0
179,073 + -1.4
179,074 - +1.3
179,085 + +1.2
179,085 + -0.9
179,137 + -1.3
179,137 + -0.4
179,138 - -1.4
179,192 + +1.2
179,193 - -0.1
179,193 - +0.9
179,193 - +2.5
179,216 + -1.0
179,217 - +0.3
179,217 - -0.6
179,375 + ABZR87_RS17075 0.37 -0.8
179,376 - ABZR87_RS17075 0.37 +0.5
179,376 - ABZR87_RS17075 0.37 +1.0
179,376 - ABZR87_RS17075 0.37 +0.1
179,388 + ABZR87_RS17075 0.39 +0.6
179,388 + ABZR87_RS17075 0.39 -2.4
179,388 + ABZR87_RS17075 0.39 +0.3
179,462 + ABZR87_RS17075 0.54 -0.4
179,462 + ABZR87_RS17075 0.54 -0.6
179,462 + ABZR87_RS17075 0.54 +0.9
179,463 - ABZR87_RS17075 0.54 -1.1
179,463 - ABZR87_RS17075 0.54 +0.4
179,463 - ABZR87_RS17075 0.54 +0.2
179,550 - ABZR87_RS17075 0.71 -1.1
179,550 - ABZR87_RS17075 0.71 +0.3
179,579 + ABZR87_RS17075 0.77 -0.4
179,579 + ABZR87_RS17075 0.77 +0.1
179,580 - ABZR87_RS17075 0.77 -2.5
179,580 - ABZR87_RS17075 0.77 +0.6
179,580 - ABZR87_RS17075 0.77 +0.8
179,620 + ABZR87_RS17075 0.85 +0.2
179,620 + ABZR87_RS17075 0.85 -0.9
179,620 + ABZR87_RS17075 0.85 +1.3
179,620 + ABZR87_RS17075 0.85 -0.6
179,688 + +0.8
179,689 - -1.4
179,689 - +0.8
179,689 - -2.6
179,819 - +1.3
179,823 + -0.9
179,823 + -0.6
179,823 + +0.5
179,824 - +0.8
180,008 - ABZR87_RS17080 0.36 -1.8
180,015 + ABZR87_RS17080 0.37 +0.1
180,280 + -0.4
180,280 + +0.0
180,280 + +0.8
180,280 + +0.4
180,281 - +0.3
180,281 - -0.6
180,330 + -1.6
180,330 + -1.0
180,331 - +0.6
180,331 - -0.5
180,382 - +0.5
180,417 + ABZR87_RS17085 0.16 -2.2
180,536 + ABZR87_RS17085 0.50 -1.3
180,537 - ABZR87_RS17085 0.50 -1.3
180,537 - ABZR87_RS17085 0.50 -0.6
180,546 - ABZR87_RS17085 0.52 -0.2
180,820 + +0.5
180,821 - +0.4
180,966 + ABZR87_RS17090 0.17 +0.7
180,995 + ABZR87_RS17090 0.19 +0.3
180,995 + ABZR87_RS17090 0.19 -1.0
180,995 + ABZR87_RS17090 0.19 -0.9
181,170 - ABZR87_RS17090 0.32 -0.6
181,239 - ABZR87_RS17090 0.36 -0.9
181,239 - ABZR87_RS17090 0.36 -0.5
181,239 - ABZR87_RS17090 0.36 -1.0
181,239 - ABZR87_RS17090 0.36 +0.9
181,243 + ABZR87_RS17090 0.37 +0.5
181,244 - ABZR87_RS17090 0.37 -0.9
181,244 - ABZR87_RS17090 0.37 +0.9
181,244 - ABZR87_RS17090 0.37 -0.2

Or see this region's nucleotide sequence