Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17055

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17045 and ABZR87_RS17050 are separated by 87 nucleotidesABZR87_RS17050 and ABZR87_RS17055 are separated by 97 nucleotidesABZR87_RS17055 and ABZR87_RS17060 are separated by 33 nucleotidesABZR87_RS17060 and ABZR87_RS17065 are separated by 128 nucleotidesABZR87_RS17065 and ABZR87_RS17070 are separated by 12 nucleotides ABZR87_RS17045: ABZR87_RS17045 - LysR family transcriptional regulator, at 174,663 to 175,556 _RS17045 ABZR87_RS17050: ABZR87_RS17050 - NAD(P)H-dependent oxidoreductase, at 175,644 to 176,432 _RS17050 ABZR87_RS17055: ABZR87_RS17055 - sulfite exporter TauE/SafE family protein, at 176,530 to 177,312 _RS17055 ABZR87_RS17060: ABZR87_RS17060 - carboxymuconolactone decarboxylase family protein, at 177,346 to 177,747 _RS17060 ABZR87_RS17065: ABZR87_RS17065 - hypothetical protein, at 177,876 to 178,208 _RS17065 ABZR87_RS17070: ABZR87_RS17070 - alpha/beta hydrolase, at 178,221 to 179,030 _RS17070 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2 3at 175.550 kb on + strandat 175.560 kb on + strandat 175.594 kb on - strandat 175.663 kb on - strandat 175.663 kb on - strandat 175.663 kb on - strandat 175.761 kb on + strand, within ABZR87_RS17050at 175.851 kb on + strand, within ABZR87_RS17050at 175.851 kb on + strand, within ABZR87_RS17050at 175.993 kb on - strand, within ABZR87_RS17050at 175.998 kb on + strand, within ABZR87_RS17050at 175.998 kb on + strand, within ABZR87_RS17050at 175.999 kb on - strand, within ABZR87_RS17050at 175.999 kb on - strand, within ABZR87_RS17050at 176.121 kb on + strand, within ABZR87_RS17050at 176.121 kb on + strand, within ABZR87_RS17050at 176.122 kb on - strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.187 kb on + strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.188 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.191 kb on - strand, within ABZR87_RS17050at 176.227 kb on - strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.431 kb on - strandat 176.443 kb on + strandat 176.476 kb on + strandat 176.483 kb on + strandat 176.483 kb on + strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.654 kb on - strand, within ABZR87_RS17055at 176.731 kb on + strand, within ABZR87_RS17055at 176.800 kb on + strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.847 kb on + strand, within ABZR87_RS17055at 176.848 kb on - strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.885 kb on - strand, within ABZR87_RS17055at 177.061 kb on - strand, within ABZR87_RS17055at 177.061 kb on - strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.642 kb on + strand, within ABZR87_RS17060at 177.643 kb on - strand, within ABZR87_RS17060at 177.643 kb on - strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.653 kb on - strand, within ABZR87_RS17060at 177.746 kb on - strandat 177.746 kb on - strandat 177.782 kb on + strandat 177.782 kb on + strandat 177.783 kb on - strandat 177.815 kb on - strandat 177.815 kb on - strandat 177.999 kb on + strand, within ABZR87_RS17065at 178.000 kb on - strand, within ABZR87_RS17065at 178.000 kb on - strand, within ABZR87_RS17065at 178.080 kb on + strand, within ABZR87_RS17065at 178.080 kb on + strand, within ABZR87_RS17065at 178.081 kb on - strand, within ABZR87_RS17065at 178.161 kb on + strand, within ABZR87_RS17065at 178.209 kb on + strandat 178.209 kb on + strandat 178.210 kb on - strandat 178.210 kb on - strandat 178.210 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
175,550 + +0.2
175,560 + +0.3
175,594 - -0.1
175,663 - -0.8
175,663 - +2.8
175,663 - +3.1
175,761 + ABZR87_RS17050 0.15 +1.6
175,851 + ABZR87_RS17050 0.26 -0.4
175,851 + ABZR87_RS17050 0.26 -1.1
175,993 - ABZR87_RS17050 0.44 -0.1
175,998 + ABZR87_RS17050 0.45 -0.7
175,998 + ABZR87_RS17050 0.45 -0.8
175,999 - ABZR87_RS17050 0.45 +0.9
175,999 - ABZR87_RS17050 0.45 +1.0
176,121 + ABZR87_RS17050 0.60 +1.4
176,121 + ABZR87_RS17050 0.60 -1.0
176,122 - ABZR87_RS17050 0.61 -0.6
176,187 + ABZR87_RS17050 0.69 -2.6
176,187 + ABZR87_RS17050 0.69 +0.5
176,187 + ABZR87_RS17050 0.69 +0.6
176,187 + ABZR87_RS17050 0.69 -0.3
176,187 + ABZR87_RS17050 0.69 +1.0
176,188 - ABZR87_RS17050 0.69 +0.3
176,188 - ABZR87_RS17050 0.69 +1.5
176,188 - ABZR87_RS17050 0.69 -0.2
176,188 - ABZR87_RS17050 0.69 +1.2
176,191 - ABZR87_RS17050 0.69 -0.9
176,191 - ABZR87_RS17050 0.69 -0.2
176,191 - ABZR87_RS17050 0.69 +1.3
176,227 - ABZR87_RS17050 0.74 +0.4
176,346 + ABZR87_RS17050 0.89 +0.2
176,346 + ABZR87_RS17050 0.89 -0.6
176,431 - +0.9
176,443 + -1.7
176,476 + -0.5
176,483 + -0.4
176,483 + +0.9
176,484 - +1.5
176,484 - +1.0
176,484 - +0.4
176,654 - ABZR87_RS17055 0.16 -0.4
176,731 + ABZR87_RS17055 0.26 -1.1
176,800 + ABZR87_RS17055 0.34 -1.6
176,801 - ABZR87_RS17055 0.35 +0.2
176,801 - ABZR87_RS17055 0.35 -1.7
176,801 - ABZR87_RS17055 0.35 -0.9
176,847 + ABZR87_RS17055 0.40 -1.5
176,848 - ABZR87_RS17055 0.41 +0.2
176,884 + ABZR87_RS17055 0.45 -0.3
176,884 + ABZR87_RS17055 0.45 -1.4
176,884 + ABZR87_RS17055 0.45 -1.9
176,885 - ABZR87_RS17055 0.45 +1.3
177,061 - ABZR87_RS17055 0.68 +3.3
177,061 - ABZR87_RS17055 0.68 +0.4
177,133 + ABZR87_RS17055 0.77 -0.8
177,133 + ABZR87_RS17055 0.77 -0.3
177,133 + ABZR87_RS17055 0.77 -0.0
177,133 + ABZR87_RS17055 0.77 -0.4
177,133 + ABZR87_RS17055 0.77 +1.0
177,134 - ABZR87_RS17055 0.77 +1.6
177,134 - ABZR87_RS17055 0.77 +1.2
177,134 - ABZR87_RS17055 0.77 +0.9
177,134 - ABZR87_RS17055 0.77 +1.7
177,134 - ABZR87_RS17055 0.77 -0.2
177,642 + ABZR87_RS17060 0.74 -1.4
177,643 - ABZR87_RS17060 0.74 +0.4
177,643 - ABZR87_RS17060 0.74 +2.5
177,652 + ABZR87_RS17060 0.76 -0.1
177,652 + ABZR87_RS17060 0.76 -0.7
177,652 + ABZR87_RS17060 0.76 -0.8
177,652 + ABZR87_RS17060 0.76 +0.2
177,653 - ABZR87_RS17060 0.76 -1.7
177,746 - +0.5
177,746 - +1.1
177,782 + -0.2
177,782 + +0.3
177,783 - -0.4
177,815 - -0.7
177,815 - -1.0
177,999 + ABZR87_RS17065 0.37 +1.4
178,000 - ABZR87_RS17065 0.37 -0.0
178,000 - ABZR87_RS17065 0.37 -0.7
178,080 + ABZR87_RS17065 0.61 +0.9
178,080 + ABZR87_RS17065 0.61 +0.9
178,081 - ABZR87_RS17065 0.62 +2.7
178,161 + ABZR87_RS17065 0.86 -0.6
178,209 + -0.2
178,209 + +0.4
178,210 - -0.4
178,210 - -1.3
178,210 - +0.0

Or see this region's nucleotide sequence