Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16415

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16410 and ABZR87_RS16415 are separated by 301 nucleotidesABZR87_RS16415 and ABZR87_RS16420 are separated by 171 nucleotides ABZR87_RS16410: ABZR87_RS16410 - DSD1 family PLP-dependent enzyme, at 33,537 to 34,685 _RS16410 ABZR87_RS16415: ABZR87_RS16415 - adenylyl-sulfate kinase, at 34,987 to 35,526 _RS16415 ABZR87_RS16420: ABZR87_RS16420 - sensor histidine kinase, at 35,698 to 37,629 _RS16420 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 34.031 kb on + strand, within ABZR87_RS16410at 34.031 kb on + strand, within ABZR87_RS16410at 34.071 kb on + strand, within ABZR87_RS16410at 34.071 kb on + strand, within ABZR87_RS16410at 34.071 kb on + strand, within ABZR87_RS16410at 34.072 kb on - strand, within ABZR87_RS16410at 34.254 kb on + strand, within ABZR87_RS16410at 34.254 kb on + strand, within ABZR87_RS16410at 34.254 kb on + strand, within ABZR87_RS16410at 34.254 kb on + strand, within ABZR87_RS16410at 34.254 kb on + strand, within ABZR87_RS16410at 34.254 kb on + strand, within ABZR87_RS16410at 34.255 kb on - strand, within ABZR87_RS16410at 34.255 kb on - strand, within ABZR87_RS16410at 34.255 kb on - strand, within ABZR87_RS16410at 34.255 kb on - strand, within ABZR87_RS16410at 34.255 kb on - strand, within ABZR87_RS16410at 34.255 kb on - strand, within ABZR87_RS16410at 34.478 kb on + strand, within ABZR87_RS16410at 34.478 kb on + strand, within ABZR87_RS16410at 34.478 kb on + strand, within ABZR87_RS16410at 34.478 kb on + strand, within ABZR87_RS16410at 34.479 kb on - strand, within ABZR87_RS16410at 34.479 kb on - strand, within ABZR87_RS16410at 34.627 kb on - strandat 34.729 kb on + strandat 34.730 kb on - strandat 34.795 kb on - strandat 34.848 kb on + strandat 34.848 kb on + strandat 34.849 kb on - strandat 34.849 kb on - strandat 34.888 kb on + strandat 34.903 kb on + strandat 34.903 kb on + strandat 34.904 kb on - strandat 34.905 kb on + strandat 34.906 kb on - strandat 34.914 kb on + strandat 34.915 kb on - strandat 34.915 kb on - strandat 34.915 kb on - strandat 34.915 kb on - strandat 34.916 kb on + strandat 34.916 kb on + strandat 34.916 kb on + strandat 34.916 kb on + strandat 34.917 kb on - strandat 34.917 kb on - strandat 34.917 kb on - strandat 34.917 kb on - strandat 35.100 kb on - strand, within ABZR87_RS16415at 35.248 kb on + strand, within ABZR87_RS16415at 35.249 kb on - strand, within ABZR87_RS16415at 35.359 kb on + strand, within ABZR87_RS16415at 35.359 kb on + strand, within ABZR87_RS16415at 35.359 kb on + strand, within ABZR87_RS16415at 35.360 kb on - strand, within ABZR87_RS16415at 35.360 kb on - strand, within ABZR87_RS16415at 35.413 kb on + strand, within ABZR87_RS16415at 35.413 kb on + strand, within ABZR87_RS16415at 35.413 kb on + strand, within ABZR87_RS16415at 35.414 kb on - strand, within ABZR87_RS16415at 35.426 kb on + strand, within ABZR87_RS16415at 35.426 kb on + strand, within ABZR87_RS16415at 35.426 kb on + strand, within ABZR87_RS16415at 35.426 kb on + strand, within ABZR87_RS16415at 35.427 kb on - strand, within ABZR87_RS16415at 35.427 kb on - strand, within ABZR87_RS16415at 35.539 kb on + strandat 35.539 kb on + strandat 35.540 kb on - strandat 35.540 kb on - strandat 35.540 kb on - strandat 35.540 kb on - strandat 35.654 kb on - strandat 35.694 kb on + strandat 35.694 kb on + strandat 35.695 kb on - strandat 35.695 kb on - strandat 35.695 kb on - strandat 35.731 kb on - strandat 35.731 kb on - strandat 35.976 kb on + strand, within ABZR87_RS16420at 35.976 kb on + strand, within ABZR87_RS16420at 35.977 kb on - strand, within ABZR87_RS16420at 36.180 kb on + strand, within ABZR87_RS16420at 36.181 kb on - strand, within ABZR87_RS16420at 36.181 kb on - strand, within ABZR87_RS16420at 36.411 kb on - strand, within ABZR87_RS16420at 36.411 kb on - strand, within ABZR87_RS16420at 36.411 kb on - strand, within ABZR87_RS16420at 36.419 kb on + strand, within ABZR87_RS16420at 36.419 kb on + strand, within ABZR87_RS16420at 36.420 kb on - strand, within ABZR87_RS16420at 36.461 kb on + strand, within ABZR87_RS16420at 36.461 kb on + strand, within ABZR87_RS16420at 36.462 kb on - strand, within ABZR87_RS16420at 36.462 kb on - strand, within ABZR87_RS16420at 36.462 kb on - strand, within ABZR87_RS16420at 36.473 kb on + strand, within ABZR87_RS16420at 36.473 kb on + strand, within ABZR87_RS16420at 36.474 kb on - strand, within ABZR87_RS16420

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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34,031 + ABZR87_RS16410 0.43 +0.8
34,031 + ABZR87_RS16410 0.43 +0.1
34,071 + ABZR87_RS16410 0.46 -0.7
34,071 + ABZR87_RS16410 0.46 +0.4
34,071 + ABZR87_RS16410 0.46 -0.9
34,072 - ABZR87_RS16410 0.47 +1.1
34,254 + ABZR87_RS16410 0.62 -0.7
34,254 + ABZR87_RS16410 0.62 +0.5
34,254 + ABZR87_RS16410 0.62 +4.3
34,254 + ABZR87_RS16410 0.62 -1.2
34,254 + ABZR87_RS16410 0.62 +1.1
34,254 + ABZR87_RS16410 0.62 -0.5
34,255 - ABZR87_RS16410 0.62 -0.3
34,255 - ABZR87_RS16410 0.62 +1.8
34,255 - ABZR87_RS16410 0.62 +1.0
34,255 - ABZR87_RS16410 0.62 -0.9
34,255 - ABZR87_RS16410 0.62 -0.4
34,255 - ABZR87_RS16410 0.62 +0.5
34,478 + ABZR87_RS16410 0.82 -1.1
34,478 + ABZR87_RS16410 0.82 +3.1
34,478 + ABZR87_RS16410 0.82 +0.6
34,478 + ABZR87_RS16410 0.82 +0.7
34,479 - ABZR87_RS16410 0.82 -1.1
34,479 - ABZR87_RS16410 0.82 -0.9
34,627 - +1.7
34,729 + -2.0
34,730 - +0.7
34,795 - +1.0
34,848 + +2.5
34,848 + -0.1
34,849 - -0.8
34,849 - -0.6
34,888 + -0.2
34,903 + -2.5
34,903 + -0.7
34,904 - +0.5
34,905 + -0.2
34,906 - +0.8
34,914 + -0.9
34,915 - -1.8
34,915 - -1.8
34,915 - -0.7
34,915 - -0.7
34,916 + -1.5
34,916 + -1.5
34,916 + +2.5
34,916 + -1.1
34,917 - -1.2
34,917 - +2.0
34,917 - -0.4
34,917 - -1.5
35,100 - ABZR87_RS16415 0.21 +2.0
35,248 + ABZR87_RS16415 0.48 +4.2
35,249 - ABZR87_RS16415 0.49 +0.7
35,359 + ABZR87_RS16415 0.69 -2.3
35,359 + ABZR87_RS16415 0.69 -0.0
35,359 + ABZR87_RS16415 0.69 -0.1
35,360 - ABZR87_RS16415 0.69 -0.7
35,360 - ABZR87_RS16415 0.69 +2.3
35,413 + ABZR87_RS16415 0.79 +0.5
35,413 + ABZR87_RS16415 0.79 -0.4
35,413 + ABZR87_RS16415 0.79 +2.8
35,414 - ABZR87_RS16415 0.79 +0.0
35,426 + ABZR87_RS16415 0.81 +0.4
35,426 + ABZR87_RS16415 0.81 +0.6
35,426 + ABZR87_RS16415 0.81 +0.9
35,426 + ABZR87_RS16415 0.81 -1.0
35,427 - ABZR87_RS16415 0.81 -1.9
35,427 - ABZR87_RS16415 0.81 +3.5
35,539 + +1.0
35,539 + +1.2
35,540 - +2.1
35,540 - +0.6
35,540 - +2.6
35,540 - +0.5
35,654 - +0.5
35,694 + -1.1
35,694 + +0.8
35,695 - +1.5
35,695 - -0.5
35,695 - +1.5
35,731 - +0.5
35,731 - -0.6
35,976 + ABZR87_RS16420 0.14 -0.3
35,976 + ABZR87_RS16420 0.14 -0.9
35,977 - ABZR87_RS16420 0.14 +0.5
36,180 + ABZR87_RS16420 0.25 -1.5
36,181 - ABZR87_RS16420 0.25 -1.2
36,181 - ABZR87_RS16420 0.25 +0.8
36,411 - ABZR87_RS16420 0.37 -0.8
36,411 - ABZR87_RS16420 0.37 -0.3
36,411 - ABZR87_RS16420 0.37 -0.1
36,419 + ABZR87_RS16420 0.37 +0.8
36,419 + ABZR87_RS16420 0.37 +0.9
36,420 - ABZR87_RS16420 0.37 -0.3
36,461 + ABZR87_RS16420 0.39 -0.6
36,461 + ABZR87_RS16420 0.39 -1.1
36,462 - ABZR87_RS16420 0.40 -0.0
36,462 - ABZR87_RS16420 0.40 -2.0
36,462 - ABZR87_RS16420 0.40 +0.3
36,473 + ABZR87_RS16420 0.40 -0.9
36,473 + ABZR87_RS16420 0.40 -0.2
36,474 - ABZR87_RS16420 0.40 -2.0

Or see this region's nucleotide sequence