Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15535

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS15530 and ABZR87_RS15535 are separated by 62 nucleotidesABZR87_RS15535 and ABZR87_RS15540 are separated by 48 nucleotides ABZR87_RS15530: ABZR87_RS15530 - LysR substrate-binding domain-containing protein, at 3,270,016 to 3,270,918 _RS15530 ABZR87_RS15535: ABZR87_RS15535 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,270,981 to 3,271,916 _RS15535 ABZR87_RS15540: ABZR87_RS15540 - DEAD/DEAH box helicase, at 3,271,965 to 3,273,461 _RS15540 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3269.981 kb on + strandat 3269.983 kb on + strandat 3269.984 kb on - strandat 3270.104 kb on + strandat 3270.104 kb on + strandat 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.121 kb on + strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.122 kb on - strand, within ABZR87_RS15530at 3270.308 kb on + strand, within ABZR87_RS15530at 3270.308 kb on + strand, within ABZR87_RS15530at 3270.308 kb on + strand, within ABZR87_RS15530at 3270.308 kb on + strand, within ABZR87_RS15530at 3270.308 kb on + strand, within ABZR87_RS15530at 3270.309 kb on - strand, within ABZR87_RS15530at 3270.361 kb on + strand, within ABZR87_RS15530at 3270.361 kb on + strand, within ABZR87_RS15530at 3270.361 kb on + strand, within ABZR87_RS15530at 3270.521 kb on + strand, within ABZR87_RS15530at 3270.522 kb on - strand, within ABZR87_RS15530at 3270.522 kb on - strand, within ABZR87_RS15530at 3270.522 kb on - strand, within ABZR87_RS15530at 3270.585 kb on + strand, within ABZR87_RS15530at 3270.615 kb on + strand, within ABZR87_RS15530at 3270.616 kb on - strand, within ABZR87_RS15530at 3270.616 kb on - strand, within ABZR87_RS15530at 3270.757 kb on + strand, within ABZR87_RS15530at 3270.758 kb on - strand, within ABZR87_RS15530at 3270.758 kb on - strand, within ABZR87_RS15530at 3270.758 kb on - strand, within ABZR87_RS15530at 3270.758 kb on - strand, within ABZR87_RS15530at 3270.758 kb on - strand, within ABZR87_RS15530at 3270.916 kb on + strandat 3270.947 kb on + strandat 3270.947 kb on + strandat 3270.947 kb on + strandat 3270.948 kb on - strandat 3271.036 kb on - strandat 3271.077 kb on - strand, within ABZR87_RS15535at 3271.123 kb on + strand, within ABZR87_RS15535at 3271.123 kb on + strand, within ABZR87_RS15535at 3271.123 kb on + strand, within ABZR87_RS15535at 3271.160 kb on - strand, within ABZR87_RS15535at 3271.550 kb on - strand, within ABZR87_RS15535at 3271.581 kb on + strand, within ABZR87_RS15535at 3271.582 kb on - strand, within ABZR87_RS15535at 3271.582 kb on - strand, within ABZR87_RS15535at 3271.674 kb on + strand, within ABZR87_RS15535at 3271.674 kb on + strand, within ABZR87_RS15535at 3271.674 kb on + strand, within ABZR87_RS15535at 3271.674 kb on + strand, within ABZR87_RS15535at 3271.711 kb on - strand, within ABZR87_RS15535at 3271.711 kb on - strand, within ABZR87_RS15535at 3271.866 kb on + strandat 3271.967 kb on - strandat 3271.967 kb on - strandat 3272.086 kb on + strandat 3272.087 kb on - strandat 3272.166 kb on - strand, within ABZR87_RS15540at 3272.166 kb on - strand, within ABZR87_RS15540at 3272.166 kb on - strand, within ABZR87_RS15540at 3272.407 kb on + strand, within ABZR87_RS15540at 3272.407 kb on + strand, within ABZR87_RS15540at 3272.408 kb on - strand, within ABZR87_RS15540at 3272.510 kb on + strand, within ABZR87_RS15540at 3272.511 kb on - strand, within ABZR87_RS15540at 3272.511 kb on - strand, within ABZR87_RS15540at 3272.511 kb on - strand, within ABZR87_RS15540at 3272.695 kb on - strand, within ABZR87_RS15540at 3272.731 kb on + strand, within ABZR87_RS15540at 3272.731 kb on + strand, within ABZR87_RS15540at 3272.731 kb on + strand, within ABZR87_RS15540at 3272.731 kb on + strand, within ABZR87_RS15540at 3272.731 kb on + strand, within ABZR87_RS15540at 3272.731 kb on + strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.732 kb on - strand, within ABZR87_RS15540at 3272.803 kb on + strand, within ABZR87_RS15540at 3272.803 kb on + strand, within ABZR87_RS15540at 3272.803 kb on + strand, within ABZR87_RS15540at 3272.804 kb on - strand, within ABZR87_RS15540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
3,269,981 + +1.0
3,269,983 + -0.3
3,269,984 - +0.1
3,270,104 + -0.3
3,270,104 + -1.2
3,270,121 + ABZR87_RS15530 0.12 -1.7
3,270,121 + ABZR87_RS15530 0.12 +1.8
3,270,121 + ABZR87_RS15530 0.12 +0.3
3,270,121 + ABZR87_RS15530 0.12 +0.5
3,270,121 + ABZR87_RS15530 0.12 +0.0
3,270,121 + ABZR87_RS15530 0.12 +0.6
3,270,121 + ABZR87_RS15530 0.12 -0.1
3,270,121 + ABZR87_RS15530 0.12 -0.5
3,270,121 + ABZR87_RS15530 0.12 -0.8
3,270,122 - ABZR87_RS15530 0.12 +0.2
3,270,122 - ABZR87_RS15530 0.12 -0.6
3,270,122 - ABZR87_RS15530 0.12 +0.1
3,270,122 - ABZR87_RS15530 0.12 +1.1
3,270,122 - ABZR87_RS15530 0.12 -0.2
3,270,308 + ABZR87_RS15530 0.32 +1.0
3,270,308 + ABZR87_RS15530 0.32 -0.8
3,270,308 + ABZR87_RS15530 0.32 -0.6
3,270,308 + ABZR87_RS15530 0.32 -1.2
3,270,308 + ABZR87_RS15530 0.32 -0.7
3,270,309 - ABZR87_RS15530 0.32 -0.4
3,270,361 + ABZR87_RS15530 0.38 -1.2
3,270,361 + ABZR87_RS15530 0.38 +1.7
3,270,361 + ABZR87_RS15530 0.38 +0.5
3,270,521 + ABZR87_RS15530 0.56 +0.8
3,270,522 - ABZR87_RS15530 0.56 +1.2
3,270,522 - ABZR87_RS15530 0.56 +0.2
3,270,522 - ABZR87_RS15530 0.56 +1.2
3,270,585 + ABZR87_RS15530 0.63 +0.5
3,270,615 + ABZR87_RS15530 0.66 +2.2
3,270,616 - ABZR87_RS15530 0.66 +0.3
3,270,616 - ABZR87_RS15530 0.66 +1.2
3,270,757 + ABZR87_RS15530 0.82 +0.9
3,270,758 - ABZR87_RS15530 0.82 -2.9
3,270,758 - ABZR87_RS15530 0.82 -0.7
3,270,758 - ABZR87_RS15530 0.82 +0.8
3,270,758 - ABZR87_RS15530 0.82 -0.6
3,270,758 - ABZR87_RS15530 0.82 -0.5
3,270,916 + +0.3
3,270,947 + +0.3
3,270,947 + -1.0
3,270,947 + -1.1
3,270,948 - +1.0
3,271,036 - +0.7
3,271,077 - ABZR87_RS15535 0.10 -1.5
3,271,123 + ABZR87_RS15535 0.15 -0.1
3,271,123 + ABZR87_RS15535 0.15 -1.7
3,271,123 + ABZR87_RS15535 0.15 -1.9
3,271,160 - ABZR87_RS15535 0.19 -2.1
3,271,550 - ABZR87_RS15535 0.61 -1.8
3,271,581 + ABZR87_RS15535 0.64 -2.3
3,271,582 - ABZR87_RS15535 0.64 -0.3
3,271,582 - ABZR87_RS15535 0.64 -2.9
3,271,674 + ABZR87_RS15535 0.74 -0.2
3,271,674 + ABZR87_RS15535 0.74 -0.7
3,271,674 + ABZR87_RS15535 0.74 -1.1
3,271,674 + ABZR87_RS15535 0.74 -1.9
3,271,711 - ABZR87_RS15535 0.78 -2.5
3,271,711 - ABZR87_RS15535 0.78 -0.8
3,271,866 + -0.3
3,271,967 - +0.3
3,271,967 - -1.2
3,272,086 + +1.5
3,272,087 - +1.5
3,272,166 - ABZR87_RS15540 0.13 -2.4
3,272,166 - ABZR87_RS15540 0.13 -1.6
3,272,166 - ABZR87_RS15540 0.13 -1.6
3,272,407 + ABZR87_RS15540 0.30 -2.1
3,272,407 + ABZR87_RS15540 0.30 +0.8
3,272,408 - ABZR87_RS15540 0.30 -0.9
3,272,510 + ABZR87_RS15540 0.36 -1.7
3,272,511 - ABZR87_RS15540 0.36 +0.3
3,272,511 - ABZR87_RS15540 0.36 +3.2
3,272,511 - ABZR87_RS15540 0.36 -1.1
3,272,695 - ABZR87_RS15540 0.49 -0.9
3,272,731 + ABZR87_RS15540 0.51 -0.7
3,272,731 + ABZR87_RS15540 0.51 -0.7
3,272,731 + ABZR87_RS15540 0.51 -0.4
3,272,731 + ABZR87_RS15540 0.51 -1.5
3,272,731 + ABZR87_RS15540 0.51 +2.2
3,272,731 + ABZR87_RS15540 0.51 +3.7
3,272,732 - ABZR87_RS15540 0.51 -2.0
3,272,732 - ABZR87_RS15540 0.51 -0.5
3,272,732 - ABZR87_RS15540 0.51 -1.3
3,272,732 - ABZR87_RS15540 0.51 -0.0
3,272,732 - ABZR87_RS15540 0.51 -0.0
3,272,732 - ABZR87_RS15540 0.51 -0.6
3,272,732 - ABZR87_RS15540 0.51 +2.5
3,272,803 + ABZR87_RS15540 0.56 +0.4
3,272,803 + ABZR87_RS15540 0.56 -1.3
3,272,803 + ABZR87_RS15540 0.56 -1.1
3,272,804 - ABZR87_RS15540 0.56 +0.7

Or see this region's nucleotide sequence