Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15530 and ABZR87_RS15535 are separated by 62 nucleotides ABZR87_RS15535 and ABZR87_RS15540 are separated by 48 nucleotides
ABZR87_RS15530: ABZR87_RS15530 - LysR substrate-binding domain-containing protein, at 3,270,016 to 3,270,918
_RS15530
ABZR87_RS15535: ABZR87_RS15535 - tRNA glutamyl-Q(34) synthetase GluQRS, at 3,270,981 to 3,271,916
_RS15535
ABZR87_RS15540: ABZR87_RS15540 - DEAD/DEAH box helicase, at 3,271,965 to 3,273,461
_RS15540
Position (kb)
3270
3271
3272 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3269.981 kb on + strand at 3269.983 kb on + strand at 3269.984 kb on - strand at 3270.104 kb on + strand at 3270.104 kb on + strand at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.121 kb on + strand, within ABZR87_RS15530 at 3270.122 kb on - strand, within ABZR87_RS15530 at 3270.122 kb on - strand, within ABZR87_RS15530 at 3270.122 kb on - strand, within ABZR87_RS15530 at 3270.122 kb on - strand, within ABZR87_RS15530 at 3270.122 kb on - strand, within ABZR87_RS15530 at 3270.308 kb on + strand, within ABZR87_RS15530 at 3270.308 kb on + strand, within ABZR87_RS15530 at 3270.308 kb on + strand, within ABZR87_RS15530 at 3270.308 kb on + strand, within ABZR87_RS15530 at 3270.308 kb on + strand, within ABZR87_RS15530 at 3270.309 kb on - strand, within ABZR87_RS15530 at 3270.361 kb on + strand, within ABZR87_RS15530 at 3270.361 kb on + strand, within ABZR87_RS15530 at 3270.361 kb on + strand, within ABZR87_RS15530 at 3270.521 kb on + strand, within ABZR87_RS15530 at 3270.522 kb on - strand, within ABZR87_RS15530 at 3270.522 kb on - strand, within ABZR87_RS15530 at 3270.522 kb on - strand, within ABZR87_RS15530 at 3270.585 kb on + strand, within ABZR87_RS15530 at 3270.615 kb on + strand, within ABZR87_RS15530 at 3270.616 kb on - strand, within ABZR87_RS15530 at 3270.616 kb on - strand, within ABZR87_RS15530 at 3270.757 kb on + strand, within ABZR87_RS15530 at 3270.758 kb on - strand, within ABZR87_RS15530 at 3270.758 kb on - strand, within ABZR87_RS15530 at 3270.758 kb on - strand, within ABZR87_RS15530 at 3270.758 kb on - strand, within ABZR87_RS15530 at 3270.758 kb on - strand, within ABZR87_RS15530 at 3270.916 kb on + strand at 3270.947 kb on + strand at 3270.947 kb on + strand at 3270.947 kb on + strand at 3270.948 kb on - strand at 3271.036 kb on - strand at 3271.077 kb on - strand, within ABZR87_RS15535 at 3271.123 kb on + strand, within ABZR87_RS15535 at 3271.123 kb on + strand, within ABZR87_RS15535 at 3271.123 kb on + strand, within ABZR87_RS15535 at 3271.160 kb on - strand, within ABZR87_RS15535 at 3271.550 kb on - strand, within ABZR87_RS15535 at 3271.581 kb on + strand, within ABZR87_RS15535 at 3271.582 kb on - strand, within ABZR87_RS15535 at 3271.582 kb on - strand, within ABZR87_RS15535 at 3271.674 kb on + strand, within ABZR87_RS15535 at 3271.674 kb on + strand, within ABZR87_RS15535 at 3271.674 kb on + strand, within ABZR87_RS15535 at 3271.674 kb on + strand, within ABZR87_RS15535 at 3271.711 kb on - strand, within ABZR87_RS15535 at 3271.711 kb on - strand, within ABZR87_RS15535 at 3271.866 kb on + strand at 3271.967 kb on - strand at 3271.967 kb on - strand at 3272.086 kb on + strand at 3272.087 kb on - strand at 3272.166 kb on - strand, within ABZR87_RS15540 at 3272.166 kb on - strand, within ABZR87_RS15540 at 3272.166 kb on - strand, within ABZR87_RS15540 at 3272.407 kb on + strand, within ABZR87_RS15540 at 3272.407 kb on + strand, within ABZR87_RS15540 at 3272.408 kb on - strand, within ABZR87_RS15540 at 3272.510 kb on + strand, within ABZR87_RS15540 at 3272.511 kb on - strand, within ABZR87_RS15540 at 3272.511 kb on - strand, within ABZR87_RS15540 at 3272.511 kb on - strand, within ABZR87_RS15540 at 3272.695 kb on - strand, within ABZR87_RS15540 at 3272.731 kb on + strand, within ABZR87_RS15540 at 3272.731 kb on + strand, within ABZR87_RS15540 at 3272.731 kb on + strand, within ABZR87_RS15540 at 3272.731 kb on + strand, within ABZR87_RS15540 at 3272.731 kb on + strand, within ABZR87_RS15540 at 3272.731 kb on + strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.732 kb on - strand, within ABZR87_RS15540 at 3272.803 kb on + strand, within ABZR87_RS15540 at 3272.803 kb on + strand, within ABZR87_RS15540 at 3272.803 kb on + strand, within ABZR87_RS15540 at 3272.804 kb on - strand, within ABZR87_RS15540
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 3,269,981 + +1.0 3,269,983 + -0.3 3,269,984 - +0.1 3,270,104 + -0.3 3,270,104 + -1.2 3,270,121 + ABZR87_RS15530 0.12 -1.7 3,270,121 + ABZR87_RS15530 0.12 +1.8 3,270,121 + ABZR87_RS15530 0.12 +0.3 3,270,121 + ABZR87_RS15530 0.12 +0.5 3,270,121 + ABZR87_RS15530 0.12 +0.0 3,270,121 + ABZR87_RS15530 0.12 +0.6 3,270,121 + ABZR87_RS15530 0.12 -0.1 3,270,121 + ABZR87_RS15530 0.12 -0.5 3,270,121 + ABZR87_RS15530 0.12 -0.8 3,270,122 - ABZR87_RS15530 0.12 +0.2 3,270,122 - ABZR87_RS15530 0.12 -0.6 3,270,122 - ABZR87_RS15530 0.12 +0.1 3,270,122 - ABZR87_RS15530 0.12 +1.1 3,270,122 - ABZR87_RS15530 0.12 -0.2 3,270,308 + ABZR87_RS15530 0.32 +1.0 3,270,308 + ABZR87_RS15530 0.32 -0.8 3,270,308 + ABZR87_RS15530 0.32 -0.6 3,270,308 + ABZR87_RS15530 0.32 -1.2 3,270,308 + ABZR87_RS15530 0.32 -0.7 3,270,309 - ABZR87_RS15530 0.32 -0.4 3,270,361 + ABZR87_RS15530 0.38 -1.2 3,270,361 + ABZR87_RS15530 0.38 +1.7 3,270,361 + ABZR87_RS15530 0.38 +0.5 3,270,521 + ABZR87_RS15530 0.56 +0.8 3,270,522 - ABZR87_RS15530 0.56 +1.2 3,270,522 - ABZR87_RS15530 0.56 +0.2 3,270,522 - ABZR87_RS15530 0.56 +1.2 3,270,585 + ABZR87_RS15530 0.63 +0.5 3,270,615 + ABZR87_RS15530 0.66 +2.2 3,270,616 - ABZR87_RS15530 0.66 +0.3 3,270,616 - ABZR87_RS15530 0.66 +1.2 3,270,757 + ABZR87_RS15530 0.82 +0.9 3,270,758 - ABZR87_RS15530 0.82 -2.9 3,270,758 - ABZR87_RS15530 0.82 -0.7 3,270,758 - ABZR87_RS15530 0.82 +0.8 3,270,758 - ABZR87_RS15530 0.82 -0.6 3,270,758 - ABZR87_RS15530 0.82 -0.5 3,270,916 + +0.3 3,270,947 + +0.3 3,270,947 + -1.0 3,270,947 + -1.1 3,270,948 - +1.0 3,271,036 - +0.7 3,271,077 - ABZR87_RS15535 0.10 -1.5 3,271,123 + ABZR87_RS15535 0.15 -0.1 3,271,123 + ABZR87_RS15535 0.15 -1.7 3,271,123 + ABZR87_RS15535 0.15 -1.9 3,271,160 - ABZR87_RS15535 0.19 -2.1 3,271,550 - ABZR87_RS15535 0.61 -1.8 3,271,581 + ABZR87_RS15535 0.64 -2.3 3,271,582 - ABZR87_RS15535 0.64 -0.3 3,271,582 - ABZR87_RS15535 0.64 -2.9 3,271,674 + ABZR87_RS15535 0.74 -0.2 3,271,674 + ABZR87_RS15535 0.74 -0.7 3,271,674 + ABZR87_RS15535 0.74 -1.1 3,271,674 + ABZR87_RS15535 0.74 -1.9 3,271,711 - ABZR87_RS15535 0.78 -2.5 3,271,711 - ABZR87_RS15535 0.78 -0.8 3,271,866 + -0.3 3,271,967 - +0.3 3,271,967 - -1.2 3,272,086 + +1.5 3,272,087 - +1.5 3,272,166 - ABZR87_RS15540 0.13 -2.4 3,272,166 - ABZR87_RS15540 0.13 -1.6 3,272,166 - ABZR87_RS15540 0.13 -1.6 3,272,407 + ABZR87_RS15540 0.30 -2.1 3,272,407 + ABZR87_RS15540 0.30 +0.8 3,272,408 - ABZR87_RS15540 0.30 -0.9 3,272,510 + ABZR87_RS15540 0.36 -1.7 3,272,511 - ABZR87_RS15540 0.36 +0.3 3,272,511 - ABZR87_RS15540 0.36 +3.2 3,272,511 - ABZR87_RS15540 0.36 -1.1 3,272,695 - ABZR87_RS15540 0.49 -0.9 3,272,731 + ABZR87_RS15540 0.51 -0.7 3,272,731 + ABZR87_RS15540 0.51 -0.7 3,272,731 + ABZR87_RS15540 0.51 -0.4 3,272,731 + ABZR87_RS15540 0.51 -1.5 3,272,731 + ABZR87_RS15540 0.51 +2.2 3,272,731 + ABZR87_RS15540 0.51 +3.7 3,272,732 - ABZR87_RS15540 0.51 -2.0 3,272,732 - ABZR87_RS15540 0.51 -0.5 3,272,732 - ABZR87_RS15540 0.51 -1.3 3,272,732 - ABZR87_RS15540 0.51 -0.0 3,272,732 - ABZR87_RS15540 0.51 -0.0 3,272,732 - ABZR87_RS15540 0.51 -0.6 3,272,732 - ABZR87_RS15540 0.51 +2.5 3,272,803 + ABZR87_RS15540 0.56 +0.4 3,272,803 + ABZR87_RS15540 0.56 -1.3 3,272,803 + ABZR87_RS15540 0.56 -1.1 3,272,804 - ABZR87_RS15540 0.56 +0.7
Or see this region's nucleotide sequence