Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13770

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13760 and ABZR87_RS13765 are separated by 22 nucleotidesABZR87_RS13765 and ABZR87_RS13770 are separated by 10 nucleotidesABZR87_RS13770 and ABZR87_RS13775 are separated by 153 nucleotidesABZR87_RS13775 and ABZR87_RS13780 are separated by 13 nucleotides ABZR87_RS13760: ABZR87_RS13760 - 3-hydroxybutyrate dehydrogenase, at 2,902,843 to 2,903,622 _RS13760 ABZR87_RS13765: ABZR87_RS13765 - CoA transferase subunit B, at 2,903,645 to 2,904,280 _RS13765 ABZR87_RS13770: ABZR87_RS13770 - CoA transferase subunit A, at 2,904,291 to 2,904,992 _RS13770 ABZR87_RS13775: ABZR87_RS13775 - LuxR C-terminal-related transcriptional regulator, at 2,905,146 to 2,905,691 _RS13775 ABZR87_RS13780: ABZR87_RS13780 - SDR family oxidoreductase, at 2,905,705 to 2,906,490 _RS13780 Position (kb) 2904 2905Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2903.343 kb on - strand, within ABZR87_RS13760at 2903.565 kb on + strandat 2903.646 kb on + strandat 2903.647 kb on - strandat 2903.647 kb on - strandat 2903.755 kb on + strand, within ABZR87_RS13765at 2904.219 kb on + strandat 2904.219 kb on + strandat 2904.219 kb on + strandat 2904.220 kb on - strandat 2904.220 kb on - strandat 2904.220 kb on - strandat 2904.292 kb on + strandat 2904.292 kb on + strandat 2904.293 kb on - strandat 2904.293 kb on - strandat 2904.293 kb on - strandat 2904.293 kb on - strandat 2904.364 kb on + strand, within ABZR87_RS13770at 2904.364 kb on + strand, within ABZR87_RS13770at 2904.365 kb on - strand, within ABZR87_RS13770at 2904.365 kb on - strand, within ABZR87_RS13770at 2904.365 kb on - strand, within ABZR87_RS13770at 2904.568 kb on + strand, within ABZR87_RS13770at 2904.568 kb on + strand, within ABZR87_RS13770at 2904.568 kb on + strand, within ABZR87_RS13770at 2904.568 kb on + strand, within ABZR87_RS13770at 2904.568 kb on + strand, within ABZR87_RS13770at 2904.568 kb on + strand, within ABZR87_RS13770at 2904.569 kb on - strand, within ABZR87_RS13770at 2904.569 kb on - strand, within ABZR87_RS13770at 2904.569 kb on - strand, within ABZR87_RS13770at 2904.569 kb on - strand, within ABZR87_RS13770at 2904.727 kb on + strand, within ABZR87_RS13770at 2904.760 kb on + strand, within ABZR87_RS13770at 2904.760 kb on + strand, within ABZR87_RS13770at 2904.760 kb on + strand, within ABZR87_RS13770at 2904.760 kb on + strand, within ABZR87_RS13770at 2904.760 kb on + strand, within ABZR87_RS13770at 2904.761 kb on - strand, within ABZR87_RS13770at 2904.761 kb on - strand, within ABZR87_RS13770at 2905.081 kb on - strandat 2905.081 kb on - strandat 2905.084 kb on - strandat 2905.084 kb on - strandat 2905.084 kb on - strandat 2905.084 kb on - strandat 2905.089 kb on + strandat 2905.089 kb on + strandat 2905.089 kb on + strandat 2905.090 kb on - strandat 2905.090 kb on - strandat 2905.090 kb on - strandat 2905.090 kb on - strandat 2905.090 kb on - strandat 2905.105 kb on + strandat 2905.132 kb on - strandat 2905.135 kb on + strandat 2905.136 kb on - strandat 2905.136 kb on - strandat 2905.137 kb on - strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.141 kb on + strandat 2905.142 kb on - strandat 2905.142 kb on - strandat 2905.142 kb on - strandat 2905.142 kb on - strandat 2905.142 kb on - strandat 2905.142 kb on - strandat 2905.142 kb on - strandat 2905.145 kb on + strandat 2905.145 kb on + strandat 2905.145 kb on + strandat 2905.145 kb on + strandat 2905.145 kb on + strandat 2905.146 kb on - strandat 2905.146 kb on - strandat 2905.146 kb on - strandat 2905.146 kb on - strandat 2905.146 kb on - strandat 2905.146 kb on - strandat 2905.161 kb on + strandat 2905.161 kb on + strandat 2905.161 kb on + strandat 2905.162 kb on - strandat 2905.300 kb on - strand, within ABZR87_RS13775at 2905.317 kb on + strand, within ABZR87_RS13775at 2905.317 kb on + strand, within ABZR87_RS13775at 2905.318 kb on - strand, within ABZR87_RS13775at 2905.368 kb on + strand, within ABZR87_RS13775at 2905.368 kb on + strand, within ABZR87_RS13775at 2905.466 kb on + strand, within ABZR87_RS13775at 2905.466 kb on + strand, within ABZR87_RS13775at 2905.466 kb on + strand, within ABZR87_RS13775at 2905.467 kb on - strand, within ABZR87_RS13775at 2905.617 kb on + strand, within ABZR87_RS13775at 2905.617 kb on + strand, within ABZR87_RS13775at 2905.618 kb on - strand, within ABZR87_RS13775at 2905.641 kb on + strandat 2905.641 kb on + strandat 2905.641 kb on + strandat 2905.642 kb on - strandat 2905.690 kb on - strandat 2905.706 kb on + strandat 2905.706 kb on + strandat 2905.707 kb on - strandat 2905.887 kb on + strand, within ABZR87_RS13780at 2905.888 kb on - strand, within ABZR87_RS13780at 2905.888 kb on - strand, within ABZR87_RS13780at 2905.888 kb on - strand, within ABZR87_RS13780at 2905.888 kb on - strand, within ABZR87_RS13780at 2905.888 kb on - strand, within ABZR87_RS13780at 2905.889 kb on + strand, within ABZR87_RS13780at 2905.889 kb on + strand, within ABZR87_RS13780at 2905.889 kb on + strand, within ABZR87_RS13780at 2905.889 kb on + strand, within ABZR87_RS13780at 2905.889 kb on + strand, within ABZR87_RS13780at 2905.890 kb on - strand, within ABZR87_RS13780at 2905.912 kb on - strand, within ABZR87_RS13780at 2905.912 kb on - strand, within ABZR87_RS13780at 2905.912 kb on - strand, within ABZR87_RS13780at 2905.912 kb on - strand, within ABZR87_RS13780at 2905.923 kb on - strand, within ABZR87_RS13780at 2905.985 kb on + strand, within ABZR87_RS13780at 2905.986 kb on - strand, within ABZR87_RS13780at 2905.986 kb on - strand, within ABZR87_RS13780

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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2,903,343 - ABZR87_RS13760 0.64 +0.4
2,903,565 + -1.9
2,903,646 + +0.4
2,903,647 - -0.4
2,903,647 - -0.0
2,903,755 + ABZR87_RS13765 0.17 +0.2
2,904,219 + -1.5
2,904,219 + -0.2
2,904,219 + -1.7
2,904,220 - -1.0
2,904,220 - +0.1
2,904,220 - -0.9
2,904,292 + -0.6
2,904,292 + -0.4
2,904,293 - -0.5
2,904,293 - -2.3
2,904,293 - -1.7
2,904,293 - +1.5
2,904,364 + ABZR87_RS13770 0.10 -0.6
2,904,364 + ABZR87_RS13770 0.10 +0.2
2,904,365 - ABZR87_RS13770 0.11 -1.4
2,904,365 - ABZR87_RS13770 0.11 -0.0
2,904,365 - ABZR87_RS13770 0.11 -1.6
2,904,568 + ABZR87_RS13770 0.39 -2.6
2,904,568 + ABZR87_RS13770 0.39 -1.1
2,904,568 + ABZR87_RS13770 0.39 -2.8
2,904,568 + ABZR87_RS13770 0.39 -2.8
2,904,568 + ABZR87_RS13770 0.39 -1.8
2,904,568 + ABZR87_RS13770 0.39 +0.5
2,904,569 - ABZR87_RS13770 0.40 -2.4
2,904,569 - ABZR87_RS13770 0.40 -1.5
2,904,569 - ABZR87_RS13770 0.40 -1.2
2,904,569 - ABZR87_RS13770 0.40 -0.5
2,904,727 + ABZR87_RS13770 0.62 -1.6
2,904,760 + ABZR87_RS13770 0.67 -2.2
2,904,760 + ABZR87_RS13770 0.67 -2.0
2,904,760 + ABZR87_RS13770 0.67 -0.3
2,904,760 + ABZR87_RS13770 0.67 -1.0
2,904,760 + ABZR87_RS13770 0.67 -2.3
2,904,761 - ABZR87_RS13770 0.67 -0.6
2,904,761 - ABZR87_RS13770 0.67 -2.8
2,905,081 - -0.3
2,905,081 - -1.6
2,905,084 - -2.2
2,905,084 - +0.5
2,905,084 - -1.0
2,905,084 - +0.3
2,905,089 + -0.2
2,905,089 + -0.7
2,905,089 + -0.9
2,905,090 - +0.5
2,905,090 - -1.6
2,905,090 - +1.8
2,905,090 - -2.0
2,905,090 - -0.6
2,905,105 + +1.8
2,905,132 - +0.2
2,905,135 + -2.7
2,905,136 - -0.4
2,905,136 - -1.4
2,905,137 - -1.9
2,905,141 + +2.3
2,905,141 + -0.6
2,905,141 + -1.1
2,905,141 + +0.6
2,905,141 + -1.3
2,905,141 + -1.6
2,905,141 + +0.2
2,905,141 + -0.8
2,905,142 - -1.5
2,905,142 - +0.1
2,905,142 - -0.8
2,905,142 - -0.9
2,905,142 - +1.7
2,905,142 - -0.5
2,905,142 - -1.6
2,905,145 + +0.4
2,905,145 + +0.4
2,905,145 + +1.4
2,905,145 + -2.3
2,905,145 + -1.5
2,905,146 - -1.2
2,905,146 - +1.5
2,905,146 - +0.2
2,905,146 - +0.1
2,905,146 - -1.4
2,905,146 - -0.2
2,905,161 + -0.6
2,905,161 + -1.4
2,905,161 + -1.1
2,905,162 - +0.1
2,905,300 - ABZR87_RS13775 0.28 +0.4
2,905,317 + ABZR87_RS13775 0.31 +1.0
2,905,317 + ABZR87_RS13775 0.31 -0.4
2,905,318 - ABZR87_RS13775 0.32 -1.4
2,905,368 + ABZR87_RS13775 0.41 -1.8
2,905,368 + ABZR87_RS13775 0.41 -0.2
2,905,466 + ABZR87_RS13775 0.59 +0.2
2,905,466 + ABZR87_RS13775 0.59 -0.3
2,905,466 + ABZR87_RS13775 0.59 -0.6
2,905,467 - ABZR87_RS13775 0.59 +0.1
2,905,617 + ABZR87_RS13775 0.86 -2.2
2,905,617 + ABZR87_RS13775 0.86 +1.1
2,905,618 - ABZR87_RS13775 0.86 -0.4
2,905,641 + -0.1
2,905,641 + +1.1
2,905,641 + -0.9
2,905,642 - +1.4
2,905,690 - -0.5
2,905,706 + +1.3
2,905,706 + +0.3
2,905,707 - -0.0
2,905,887 + ABZR87_RS13780 0.23 -0.8
2,905,888 - ABZR87_RS13780 0.23 +1.5
2,905,888 - ABZR87_RS13780 0.23 +0.8
2,905,888 - ABZR87_RS13780 0.23 +2.3
2,905,888 - ABZR87_RS13780 0.23 -1.2
2,905,888 - ABZR87_RS13780 0.23 +0.9
2,905,889 + ABZR87_RS13780 0.23 +1.6
2,905,889 + ABZR87_RS13780 0.23 -0.2
2,905,889 + ABZR87_RS13780 0.23 +0.8
2,905,889 + ABZR87_RS13780 0.23 -0.1
2,905,889 + ABZR87_RS13780 0.23 +0.3
2,905,890 - ABZR87_RS13780 0.24 +0.1
2,905,912 - ABZR87_RS13780 0.26 +1.8
2,905,912 - ABZR87_RS13780 0.26 -1.0
2,905,912 - ABZR87_RS13780 0.26 -0.0
2,905,912 - ABZR87_RS13780 0.26 -0.0
2,905,923 - ABZR87_RS13780 0.28 -0.9
2,905,985 + ABZR87_RS13780 0.36 -1.8
2,905,986 - ABZR87_RS13780 0.36 +0.8
2,905,986 - ABZR87_RS13780 0.36 +1.6

Or see this region's nucleotide sequence