Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS13760 and ABZR87_RS13765 are separated by 22 nucleotides ABZR87_RS13765 and ABZR87_RS13770 are separated by 10 nucleotides ABZR87_RS13770 and ABZR87_RS13775 are separated by 153 nucleotides ABZR87_RS13775 and ABZR87_RS13780 are separated by 13 nucleotides
ABZR87_RS13760: ABZR87_RS13760 - 3-hydroxybutyrate dehydrogenase, at 2,902,843 to 2,903,622
_RS13760
ABZR87_RS13765: ABZR87_RS13765 - CoA transferase subunit B, at 2,903,645 to 2,904,280
_RS13765
ABZR87_RS13770: ABZR87_RS13770 - CoA transferase subunit A, at 2,904,291 to 2,904,992
_RS13770
ABZR87_RS13775: ABZR87_RS13775 - LuxR C-terminal-related transcriptional regulator, at 2,905,146 to 2,905,691
_RS13775
ABZR87_RS13780: ABZR87_RS13780 - SDR family oxidoreductase, at 2,905,705 to 2,906,490
_RS13780
Position (kb)
2904
2905 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2903.343 kb on - strand, within ABZR87_RS13760 at 2903.565 kb on + strand at 2903.646 kb on + strand at 2903.647 kb on - strand at 2903.647 kb on - strand at 2903.755 kb on + strand, within ABZR87_RS13765 at 2904.219 kb on + strand at 2904.219 kb on + strand at 2904.219 kb on + strand at 2904.220 kb on - strand at 2904.220 kb on - strand at 2904.220 kb on - strand at 2904.292 kb on + strand at 2904.292 kb on + strand at 2904.293 kb on - strand at 2904.293 kb on - strand at 2904.293 kb on - strand at 2904.293 kb on - strand at 2904.364 kb on + strand, within ABZR87_RS13770 at 2904.364 kb on + strand, within ABZR87_RS13770 at 2904.365 kb on - strand, within ABZR87_RS13770 at 2904.365 kb on - strand, within ABZR87_RS13770 at 2904.365 kb on - strand, within ABZR87_RS13770 at 2904.568 kb on + strand, within ABZR87_RS13770 at 2904.568 kb on + strand, within ABZR87_RS13770 at 2904.568 kb on + strand, within ABZR87_RS13770 at 2904.568 kb on + strand, within ABZR87_RS13770 at 2904.568 kb on + strand, within ABZR87_RS13770 at 2904.568 kb on + strand, within ABZR87_RS13770 at 2904.569 kb on - strand, within ABZR87_RS13770 at 2904.569 kb on - strand, within ABZR87_RS13770 at 2904.569 kb on - strand, within ABZR87_RS13770 at 2904.569 kb on - strand, within ABZR87_RS13770 at 2904.727 kb on + strand, within ABZR87_RS13770 at 2904.760 kb on + strand, within ABZR87_RS13770 at 2904.760 kb on + strand, within ABZR87_RS13770 at 2904.760 kb on + strand, within ABZR87_RS13770 at 2904.760 kb on + strand, within ABZR87_RS13770 at 2904.760 kb on + strand, within ABZR87_RS13770 at 2904.761 kb on - strand, within ABZR87_RS13770 at 2904.761 kb on - strand, within ABZR87_RS13770 at 2905.081 kb on - strand at 2905.081 kb on - strand at 2905.084 kb on - strand at 2905.084 kb on - strand at 2905.084 kb on - strand at 2905.084 kb on - strand at 2905.089 kb on + strand at 2905.089 kb on + strand at 2905.089 kb on + strand at 2905.090 kb on - strand at 2905.090 kb on - strand at 2905.090 kb on - strand at 2905.090 kb on - strand at 2905.090 kb on - strand at 2905.105 kb on + strand at 2905.132 kb on - strand at 2905.135 kb on + strand at 2905.136 kb on - strand at 2905.136 kb on - strand at 2905.137 kb on - strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.141 kb on + strand at 2905.142 kb on - strand at 2905.142 kb on - strand at 2905.142 kb on - strand at 2905.142 kb on - strand at 2905.142 kb on - strand at 2905.142 kb on - strand at 2905.142 kb on - strand at 2905.145 kb on + strand at 2905.145 kb on + strand at 2905.145 kb on + strand at 2905.145 kb on + strand at 2905.145 kb on + strand at 2905.146 kb on - strand at 2905.146 kb on - strand at 2905.146 kb on - strand at 2905.146 kb on - strand at 2905.146 kb on - strand at 2905.146 kb on - strand at 2905.161 kb on + strand at 2905.161 kb on + strand at 2905.161 kb on + strand at 2905.162 kb on - strand at 2905.300 kb on - strand, within ABZR87_RS13775 at 2905.317 kb on + strand, within ABZR87_RS13775 at 2905.317 kb on + strand, within ABZR87_RS13775 at 2905.318 kb on - strand, within ABZR87_RS13775 at 2905.368 kb on + strand, within ABZR87_RS13775 at 2905.368 kb on + strand, within ABZR87_RS13775 at 2905.466 kb on + strand, within ABZR87_RS13775 at 2905.466 kb on + strand, within ABZR87_RS13775 at 2905.466 kb on + strand, within ABZR87_RS13775 at 2905.467 kb on - strand, within ABZR87_RS13775 at 2905.617 kb on + strand, within ABZR87_RS13775 at 2905.617 kb on + strand, within ABZR87_RS13775 at 2905.618 kb on - strand, within ABZR87_RS13775 at 2905.641 kb on + strand at 2905.641 kb on + strand at 2905.641 kb on + strand at 2905.642 kb on - strand at 2905.690 kb on - strand at 2905.706 kb on + strand at 2905.706 kb on + strand at 2905.707 kb on - strand at 2905.887 kb on + strand, within ABZR87_RS13780 at 2905.888 kb on - strand, within ABZR87_RS13780 at 2905.888 kb on - strand, within ABZR87_RS13780 at 2905.888 kb on - strand, within ABZR87_RS13780 at 2905.888 kb on - strand, within ABZR87_RS13780 at 2905.888 kb on - strand, within ABZR87_RS13780 at 2905.889 kb on + strand, within ABZR87_RS13780 at 2905.889 kb on + strand, within ABZR87_RS13780 at 2905.889 kb on + strand, within ABZR87_RS13780 at 2905.889 kb on + strand, within ABZR87_RS13780 at 2905.889 kb on + strand, within ABZR87_RS13780 at 2905.890 kb on - strand, within ABZR87_RS13780 at 2905.912 kb on - strand, within ABZR87_RS13780 at 2905.912 kb on - strand, within ABZR87_RS13780 at 2905.912 kb on - strand, within ABZR87_RS13780 at 2905.912 kb on - strand, within ABZR87_RS13780 at 2905.923 kb on - strand, within ABZR87_RS13780 at 2905.985 kb on + strand, within ABZR87_RS13780 at 2905.986 kb on - strand, within ABZR87_RS13780 at 2905.986 kb on - strand, within ABZR87_RS13780
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 2,903,343 - ABZR87_RS13760 0.64 +0.4 2,903,565 + -1.9 2,903,646 + +0.4 2,903,647 - -0.4 2,903,647 - -0.0 2,903,755 + ABZR87_RS13765 0.17 +0.2 2,904,219 + -1.5 2,904,219 + -0.2 2,904,219 + -1.7 2,904,220 - -1.0 2,904,220 - +0.1 2,904,220 - -0.9 2,904,292 + -0.6 2,904,292 + -0.4 2,904,293 - -0.5 2,904,293 - -2.3 2,904,293 - -1.7 2,904,293 - +1.5 2,904,364 + ABZR87_RS13770 0.10 -0.6 2,904,364 + ABZR87_RS13770 0.10 +0.2 2,904,365 - ABZR87_RS13770 0.11 -1.4 2,904,365 - ABZR87_RS13770 0.11 -0.0 2,904,365 - ABZR87_RS13770 0.11 -1.6 2,904,568 + ABZR87_RS13770 0.39 -2.6 2,904,568 + ABZR87_RS13770 0.39 -1.1 2,904,568 + ABZR87_RS13770 0.39 -2.8 2,904,568 + ABZR87_RS13770 0.39 -2.8 2,904,568 + ABZR87_RS13770 0.39 -1.8 2,904,568 + ABZR87_RS13770 0.39 +0.5 2,904,569 - ABZR87_RS13770 0.40 -2.4 2,904,569 - ABZR87_RS13770 0.40 -1.5 2,904,569 - ABZR87_RS13770 0.40 -1.2 2,904,569 - ABZR87_RS13770 0.40 -0.5 2,904,727 + ABZR87_RS13770 0.62 -1.6 2,904,760 + ABZR87_RS13770 0.67 -2.2 2,904,760 + ABZR87_RS13770 0.67 -2.0 2,904,760 + ABZR87_RS13770 0.67 -0.3 2,904,760 + ABZR87_RS13770 0.67 -1.0 2,904,760 + ABZR87_RS13770 0.67 -2.3 2,904,761 - ABZR87_RS13770 0.67 -0.6 2,904,761 - ABZR87_RS13770 0.67 -2.8 2,905,081 - -0.3 2,905,081 - -1.6 2,905,084 - -2.2 2,905,084 - +0.5 2,905,084 - -1.0 2,905,084 - +0.3 2,905,089 + -0.2 2,905,089 + -0.7 2,905,089 + -0.9 2,905,090 - +0.5 2,905,090 - -1.6 2,905,090 - +1.8 2,905,090 - -2.0 2,905,090 - -0.6 2,905,105 + +1.8 2,905,132 - +0.2 2,905,135 + -2.7 2,905,136 - -0.4 2,905,136 - -1.4 2,905,137 - -1.9 2,905,141 + +2.3 2,905,141 + -0.6 2,905,141 + -1.1 2,905,141 + +0.6 2,905,141 + -1.3 2,905,141 + -1.6 2,905,141 + +0.2 2,905,141 + -0.8 2,905,142 - -1.5 2,905,142 - +0.1 2,905,142 - -0.8 2,905,142 - -0.9 2,905,142 - +1.7 2,905,142 - -0.5 2,905,142 - -1.6 2,905,145 + +0.4 2,905,145 + +0.4 2,905,145 + +1.4 2,905,145 + -2.3 2,905,145 + -1.5 2,905,146 - -1.2 2,905,146 - +1.5 2,905,146 - +0.2 2,905,146 - +0.1 2,905,146 - -1.4 2,905,146 - -0.2 2,905,161 + -0.6 2,905,161 + -1.4 2,905,161 + -1.1 2,905,162 - +0.1 2,905,300 - ABZR87_RS13775 0.28 +0.4 2,905,317 + ABZR87_RS13775 0.31 +1.0 2,905,317 + ABZR87_RS13775 0.31 -0.4 2,905,318 - ABZR87_RS13775 0.32 -1.4 2,905,368 + ABZR87_RS13775 0.41 -1.8 2,905,368 + ABZR87_RS13775 0.41 -0.2 2,905,466 + ABZR87_RS13775 0.59 +0.2 2,905,466 + ABZR87_RS13775 0.59 -0.3 2,905,466 + ABZR87_RS13775 0.59 -0.6 2,905,467 - ABZR87_RS13775 0.59 +0.1 2,905,617 + ABZR87_RS13775 0.86 -2.2 2,905,617 + ABZR87_RS13775 0.86 +1.1 2,905,618 - ABZR87_RS13775 0.86 -0.4 2,905,641 + -0.1 2,905,641 + +1.1 2,905,641 + -0.9 2,905,642 - +1.4 2,905,690 - -0.5 2,905,706 + +1.3 2,905,706 + +0.3 2,905,707 - -0.0 2,905,887 + ABZR87_RS13780 0.23 -0.8 2,905,888 - ABZR87_RS13780 0.23 +1.5 2,905,888 - ABZR87_RS13780 0.23 +0.8 2,905,888 - ABZR87_RS13780 0.23 +2.3 2,905,888 - ABZR87_RS13780 0.23 -1.2 2,905,888 - ABZR87_RS13780 0.23 +0.9 2,905,889 + ABZR87_RS13780 0.23 +1.6 2,905,889 + ABZR87_RS13780 0.23 -0.2 2,905,889 + ABZR87_RS13780 0.23 +0.8 2,905,889 + ABZR87_RS13780 0.23 -0.1 2,905,889 + ABZR87_RS13780 0.23 +0.3 2,905,890 - ABZR87_RS13780 0.24 +0.1 2,905,912 - ABZR87_RS13780 0.26 +1.8 2,905,912 - ABZR87_RS13780 0.26 -1.0 2,905,912 - ABZR87_RS13780 0.26 -0.0 2,905,912 - ABZR87_RS13780 0.26 -0.0 2,905,923 - ABZR87_RS13780 0.28 -0.9 2,905,985 + ABZR87_RS13780 0.36 -1.8 2,905,986 - ABZR87_RS13780 0.36 +0.8 2,905,986 - ABZR87_RS13780 0.36 +1.6
Or see this region's nucleotide sequence