Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12475

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12470 and ABZR87_RS12475 are separated by 81 nucleotidesABZR87_RS12475 and ABZR87_RS12480 overlap by 4 nucleotides ABZR87_RS12470: ABZR87_RS12470 - DNA polymerase III subunit delta', at 2,641,902 to 2,642,912 _RS12470 ABZR87_RS12475: ABZR87_RS12475 - dTMP kinase, at 2,642,994 to 2,643,611 _RS12475 ABZR87_RS12480: ABZR87_RS12480 - endolytic transglycosylase MltG, at 2,643,608 to 2,644,606 _RS12480 Position (kb) 2642 2643 2644Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2643.628 kb on - strandat 2643.628 kb on - strandat 2643.703 kb on - strandat 2643.703 kb on - strandat 2643.796 kb on - strand, within ABZR87_RS12480at 2643.805 kb on - strand, within ABZR87_RS12480at 2643.868 kb on - strand, within ABZR87_RS12480at 2643.868 kb on - strand, within ABZR87_RS12480at 2644.000 kb on - strand, within ABZR87_RS12480at 2644.012 kb on - strand, within ABZR87_RS12480at 2644.012 kb on - strand, within ABZR87_RS12480at 2644.012 kb on - strand, within ABZR87_RS12480at 2644.012 kb on - strand, within ABZR87_RS12480at 2644.012 kb on - strand, within ABZR87_RS12480at 2644.012 kb on - strand, within ABZR87_RS12480at 2644.120 kb on - strand, within ABZR87_RS12480at 2644.120 kb on - strand, within ABZR87_RS12480

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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2,643,628 - -0.8
2,643,628 - +0.8
2,643,703 - +2.3
2,643,703 - +1.1
2,643,796 - ABZR87_RS12480 0.19 -0.6
2,643,805 - ABZR87_RS12480 0.20 -1.8
2,643,868 - ABZR87_RS12480 0.26 -0.6
2,643,868 - ABZR87_RS12480 0.26 +0.7
2,644,000 - ABZR87_RS12480 0.39 -0.9
2,644,012 - ABZR87_RS12480 0.40 +2.5
2,644,012 - ABZR87_RS12480 0.40 +2.9
2,644,012 - ABZR87_RS12480 0.40 -0.6
2,644,012 - ABZR87_RS12480 0.40 -2.2
2,644,012 - ABZR87_RS12480 0.40 -0.2
2,644,012 - ABZR87_RS12480 0.40 +0.7
2,644,120 - ABZR87_RS12480 0.51 -0.3
2,644,120 - ABZR87_RS12480 0.51 +0.3

Or see this region's nucleotide sequence