Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11980

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11975 and ABZR87_RS11980 are separated by 270 nucleotidesABZR87_RS11980 and ABZR87_RS11985 are separated by 76 nucleotidesABZR87_RS11985 and ABZR87_RS11990 are separated by 36 nucleotides ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805 _RS11975 ABZR87_RS11980: ABZR87_RS11980 - cold-shock protein, at 2,544,076 to 2,544,279 _RS11980 ABZR87_RS11985: ABZR87_RS11985 - DUF5074 domain-containing protein, at 2,544,356 to 2,545,000 _RS11985 ABZR87_RS11990: ABZR87_RS11990 - hypothetical protein, at 2,545,037 to 2,546,257 _RS11990 Position (kb) 2544 2545Strain fitness (log2 ratio) -2 -1 0 1 2at 2543.894 kb on - strandat 2543.894 kb on - strandat 2543.898 kb on - strandat 2543.898 kb on - strandat 2543.898 kb on - strandat 2543.929 kb on + strandat 2543.930 kb on - strandat 2543.961 kb on + strandat 2543.994 kb on + strandat 2543.995 kb on - strandat 2543.995 kb on - strandat 2544.092 kb on + strandat 2544.092 kb on + strandat 2544.093 kb on - strandat 2544.093 kb on - strandat 2544.093 kb on - strandat 2544.223 kb on + strand, within ABZR87_RS11980at 2544.358 kb on - strandat 2544.358 kb on - strandat 2544.460 kb on + strand, within ABZR87_RS11985at 2544.461 kb on - strand, within ABZR87_RS11985at 2544.476 kb on - strand, within ABZR87_RS11985at 2544.476 kb on - strand, within ABZR87_RS11985at 2544.532 kb on + strand, within ABZR87_RS11985at 2544.533 kb on - strand, within ABZR87_RS11985at 2544.614 kb on + strand, within ABZR87_RS11985at 2544.614 kb on + strand, within ABZR87_RS11985at 2544.615 kb on - strand, within ABZR87_RS11985at 2544.663 kb on + strand, within ABZR87_RS11985at 2544.924 kb on + strand, within ABZR87_RS11985at 2544.924 kb on + strand, within ABZR87_RS11985at 2544.924 kb on + strand, within ABZR87_RS11985at 2544.924 kb on + strand, within ABZR87_RS11985at 2544.924 kb on + strand, within ABZR87_RS11985at 2544.925 kb on - strand, within ABZR87_RS11985at 2544.966 kb on + strandat 2544.967 kb on - strandat 2545.038 kb on + strandat 2545.064 kb on + strandat 2545.065 kb on - strandat 2545.065 kb on - strandat 2545.175 kb on + strand, within ABZR87_RS11990at 2545.263 kb on + strand, within ABZR87_RS11990at 2545.264 kb on - strand, within ABZR87_RS11990at 2545.264 kb on - strand, within ABZR87_RS11990

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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2,543,894 - +2.2
2,543,894 - -0.0
2,543,898 - -0.2
2,543,898 - +0.1
2,543,898 - -0.8
2,543,929 + -1.0
2,543,930 - +1.0
2,543,961 + -0.8
2,543,994 + +0.0
2,543,995 - +0.1
2,543,995 - -0.1
2,544,092 + -0.2
2,544,092 + -0.2
2,544,093 - -1.2
2,544,093 - +0.4
2,544,093 - -0.3
2,544,223 + ABZR87_RS11980 0.72 -1.5
2,544,358 - +0.0
2,544,358 - +1.8
2,544,460 + ABZR87_RS11985 0.16 +0.4
2,544,461 - ABZR87_RS11985 0.16 +0.2
2,544,476 - ABZR87_RS11985 0.19 -1.7
2,544,476 - ABZR87_RS11985 0.19 +0.2
2,544,532 + ABZR87_RS11985 0.27 -0.2
2,544,533 - ABZR87_RS11985 0.27 -0.2
2,544,614 + ABZR87_RS11985 0.40 +1.3
2,544,614 + ABZR87_RS11985 0.40 -0.5
2,544,615 - ABZR87_RS11985 0.40 +0.3
2,544,663 + ABZR87_RS11985 0.48 +0.2
2,544,924 + ABZR87_RS11985 0.88 +0.8
2,544,924 + ABZR87_RS11985 0.88 -0.1
2,544,924 + ABZR87_RS11985 0.88 -1.8
2,544,924 + ABZR87_RS11985 0.88 +1.2
2,544,924 + ABZR87_RS11985 0.88 -0.7
2,544,925 - ABZR87_RS11985 0.88 +0.8
2,544,966 + +0.9
2,544,967 - -0.1
2,545,038 + -1.9
2,545,064 + -1.3
2,545,065 - +0.4
2,545,065 - -0.3
2,545,175 + ABZR87_RS11990 0.11 -0.3
2,545,263 + ABZR87_RS11990 0.19 -1.0
2,545,264 - ABZR87_RS11990 0.19 +0.2
2,545,264 - ABZR87_RS11990 0.19 +0.1

Or see this region's nucleotide sequence