Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11975 and ABZR87_RS11980 are separated by 270 nucleotides ABZR87_RS11980 and ABZR87_RS11985 are separated by 76 nucleotides ABZR87_RS11985 and ABZR87_RS11990 are separated by 36 nucleotides
ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805
_RS11975
ABZR87_RS11980: ABZR87_RS11980 - cold-shock protein, at 2,544,076 to 2,544,279
_RS11980
ABZR87_RS11985: ABZR87_RS11985 - DUF5074 domain-containing protein, at 2,544,356 to 2,545,000
_RS11985
ABZR87_RS11990: ABZR87_RS11990 - hypothetical protein, at 2,545,037 to 2,546,257
_RS11990
Position (kb)
2544
2545 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2543.894 kb on - strand at 2543.894 kb on - strand at 2543.898 kb on - strand at 2543.898 kb on - strand at 2543.898 kb on - strand at 2543.929 kb on + strand at 2543.930 kb on - strand at 2543.961 kb on + strand at 2543.994 kb on + strand at 2543.995 kb on - strand at 2543.995 kb on - strand at 2544.092 kb on + strand at 2544.092 kb on + strand at 2544.093 kb on - strand at 2544.093 kb on - strand at 2544.093 kb on - strand at 2544.223 kb on + strand, within ABZR87_RS11980 at 2544.358 kb on - strand at 2544.358 kb on - strand at 2544.460 kb on + strand, within ABZR87_RS11985 at 2544.461 kb on - strand, within ABZR87_RS11985 at 2544.476 kb on - strand, within ABZR87_RS11985 at 2544.476 kb on - strand, within ABZR87_RS11985 at 2544.532 kb on + strand, within ABZR87_RS11985 at 2544.533 kb on - strand, within ABZR87_RS11985 at 2544.614 kb on + strand, within ABZR87_RS11985 at 2544.614 kb on + strand, within ABZR87_RS11985 at 2544.615 kb on - strand, within ABZR87_RS11985 at 2544.663 kb on + strand, within ABZR87_RS11985 at 2544.924 kb on + strand, within ABZR87_RS11985 at 2544.924 kb on + strand, within ABZR87_RS11985 at 2544.924 kb on + strand, within ABZR87_RS11985 at 2544.924 kb on + strand, within ABZR87_RS11985 at 2544.924 kb on + strand, within ABZR87_RS11985 at 2544.925 kb on - strand, within ABZR87_RS11985 at 2544.966 kb on + strand at 2544.967 kb on - strand at 2545.038 kb on + strand at 2545.064 kb on + strand at 2545.065 kb on - strand at 2545.065 kb on - strand at 2545.175 kb on + strand, within ABZR87_RS11990 at 2545.263 kb on + strand, within ABZR87_RS11990 at 2545.264 kb on - strand, within ABZR87_RS11990 at 2545.264 kb on - strand, within ABZR87_RS11990
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 2,543,894 - +2.2 2,543,894 - -0.0 2,543,898 - -0.2 2,543,898 - +0.1 2,543,898 - -0.8 2,543,929 + -1.0 2,543,930 - +1.0 2,543,961 + -0.8 2,543,994 + +0.0 2,543,995 - +0.1 2,543,995 - -0.1 2,544,092 + -0.2 2,544,092 + -0.2 2,544,093 - -1.2 2,544,093 - +0.4 2,544,093 - -0.3 2,544,223 + ABZR87_RS11980 0.72 -1.5 2,544,358 - +0.0 2,544,358 - +1.8 2,544,460 + ABZR87_RS11985 0.16 +0.4 2,544,461 - ABZR87_RS11985 0.16 +0.2 2,544,476 - ABZR87_RS11985 0.19 -1.7 2,544,476 - ABZR87_RS11985 0.19 +0.2 2,544,532 + ABZR87_RS11985 0.27 -0.2 2,544,533 - ABZR87_RS11985 0.27 -0.2 2,544,614 + ABZR87_RS11985 0.40 +1.3 2,544,614 + ABZR87_RS11985 0.40 -0.5 2,544,615 - ABZR87_RS11985 0.40 +0.3 2,544,663 + ABZR87_RS11985 0.48 +0.2 2,544,924 + ABZR87_RS11985 0.88 +0.8 2,544,924 + ABZR87_RS11985 0.88 -0.1 2,544,924 + ABZR87_RS11985 0.88 -1.8 2,544,924 + ABZR87_RS11985 0.88 +1.2 2,544,924 + ABZR87_RS11985 0.88 -0.7 2,544,925 - ABZR87_RS11985 0.88 +0.8 2,544,966 + +0.9 2,544,967 - -0.1 2,545,038 + -1.9 2,545,064 + -1.3 2,545,065 - +0.4 2,545,065 - -0.3 2,545,175 + ABZR87_RS11990 0.11 -0.3 2,545,263 + ABZR87_RS11990 0.19 -1.0 2,545,264 - ABZR87_RS11990 0.19 +0.2 2,545,264 - ABZR87_RS11990 0.19 +0.1
Or see this region's nucleotide sequence