Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10670

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS10665 and ABZR87_RS10670 are separated by 149 nucleotidesABZR87_RS10670 and ABZR87_RS10675 are separated by 192 nucleotides ABZR87_RS10665: ABZR87_RS10665 - aspartate kinase, at 2,256,965 to 2,258,215 _RS10665 ABZR87_RS10670: ABZR87_RS10670 - tRNA-Ser, at 2,258,365 to 2,258,458 _RS10670 ABZR87_RS10675: ABZR87_RS10675 - enoyl-ACP reductase FabI, at 2,258,651 to 2,259,445 _RS10675 Position (kb) 2258 2259Strain fitness (log2 ratio) -2 -1 0 1at 2257.711 kb on + strand, within ABZR87_RS10665at 2258.213 kb on + strandat 2258.213 kb on + strandat 2258.214 kb on - strandat 2258.214 kb on - strandat 2258.214 kb on - strandat 2258.487 kb on + strandat 2258.487 kb on + strandat 2258.488 kb on - strandat 2258.595 kb on - strandat 2258.647 kb on + strandat 2258.647 kb on + strandat 2258.647 kb on + strandat 2258.647 kb on + strandat 2258.647 kb on + strandat 2259.457 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
2,257,711 + ABZR87_RS10665 0.60 -1.2
2,258,213 + -0.6
2,258,213 + -2.5
2,258,214 - -1.2
2,258,214 - +0.1
2,258,214 - +0.2
2,258,487 + -1.5
2,258,487 + -2.0
2,258,488 - +0.4
2,258,595 - +1.3
2,258,647 + -0.5
2,258,647 + +0.4
2,258,647 + +0.8
2,258,647 + +0.2
2,258,647 + -0.0
2,259,457 - -0.8

Or see this region's nucleotide sequence