Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09175

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09170 and ABZR87_RS09175 are separated by 81 nucleotidesABZR87_RS09175 and ABZR87_RS09180 are separated by 12 nucleotidesABZR87_RS09180 and ABZR87_RS09185 are separated by 97 nucleotidesABZR87_RS09185 and ABZR87_RS09190 are separated by 81 nucleotides ABZR87_RS09170: ABZR87_RS09170 - AsmA family protein, at 1,940,504 to 1,942,801 _RS09170 ABZR87_RS09175: ABZR87_RS09175 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,942,883 to 1,943,785 _RS09175 ABZR87_RS09180: ABZR87_RS09180 - thioredoxin domain-containing protein, at 1,943,798 to 1,944,121 _RS09180 ABZR87_RS09185: ABZR87_RS09185 - bacteriohemerythrin, at 1,944,219 to 1,944,635 _RS09185 ABZR87_RS09190: ABZR87_RS09190 - DsbA family protein, at 1,944,717 to 1,945,382 _RS09190 Position (kb) 1942 1943 1944Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1941.887 kb on + strand, within ABZR87_RS09170at 1942.062 kb on + strand, within ABZR87_RS09170at 1942.062 kb on + strand, within ABZR87_RS09170at 1942.062 kb on + strand, within ABZR87_RS09170at 1942.062 kb on + strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.063 kb on - strand, within ABZR87_RS09170at 1942.093 kb on - strand, within ABZR87_RS09170at 1942.093 kb on - strand, within ABZR87_RS09170at 1942.218 kb on + strand, within ABZR87_RS09170at 1942.219 kb on - strand, within ABZR87_RS09170at 1942.219 kb on - strand, within ABZR87_RS09170at 1942.219 kb on - strand, within ABZR87_RS09170at 1942.219 kb on - strand, within ABZR87_RS09170at 1942.319 kb on + strand, within ABZR87_RS09170at 1942.320 kb on - strand, within ABZR87_RS09170at 1942.587 kb on + strandat 1942.587 kb on + strandat 1942.587 kb on + strandat 1942.587 kb on + strandat 1942.587 kb on + strandat 1942.588 kb on - strandat 1942.588 kb on - strandat 1942.588 kb on - strandat 1942.588 kb on - strandat 1942.692 kb on + strandat 1942.692 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.795 kb on + strandat 1942.796 kb on - strandat 1942.796 kb on - strandat 1942.796 kb on - strandat 1942.796 kb on - strandat 1942.796 kb on - strandat 1942.796 kb on - strandat 1942.817 kb on - strandat 1942.817 kb on - strandat 1942.819 kb on - strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.848 kb on + strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.849 kb on - strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.850 kb on + strandat 1942.851 kb on - strandat 1942.851 kb on - strandat 1942.851 kb on - strandat 1942.851 kb on - strandat 1942.851 kb on - strandat 1942.851 kb on - strandat 1942.851 kb on - strandat 1942.852 kb on + strandat 1942.852 kb on + strandat 1942.852 kb on + strandat 1942.852 kb on + strandat 1942.852 kb on + strandat 1942.853 kb on - strandat 1942.853 kb on - strandat 1942.853 kb on - strandat 1942.853 kb on - strandat 1942.853 kb on - strandat 1942.893 kb on + strandat 1942.893 kb on + strandat 1942.893 kb on + strandat 1942.893 kb on + strandat 1942.894 kb on - strandat 1942.937 kb on + strandat 1942.937 kb on + strandat 1942.937 kb on + strandat 1942.937 kb on + strandat 1942.938 kb on - strandat 1942.970 kb on + strandat 1942.971 kb on - strandat 1942.971 kb on - strandat 1943.153 kb on + strand, within ABZR87_RS09175at 1943.153 kb on + strand, within ABZR87_RS09175at 1943.282 kb on + strand, within ABZR87_RS09175at 1943.283 kb on - strand, within ABZR87_RS09175at 1943.718 kb on + strandat 1943.718 kb on + strandat 1943.718 kb on + strandat 1943.718 kb on + strandat 1943.719 kb on - strandat 1943.719 kb on - strandat 1943.844 kb on + strand, within ABZR87_RS09180at 1943.844 kb on + strand, within ABZR87_RS09180at 1943.844 kb on + strand, within ABZR87_RS09180at 1943.845 kb on - strand, within ABZR87_RS09180at 1943.845 kb on - strand, within ABZR87_RS09180at 1944.187 kb on + strandat 1944.187 kb on + strandat 1944.188 kb on - strandat 1944.188 kb on - strandat 1944.236 kb on + strandat 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.268 kb on + strand, within ABZR87_RS09185at 1944.269 kb on - strand, within ABZR87_RS09185at 1944.269 kb on - strand, within ABZR87_RS09185at 1944.269 kb on - strand, within ABZR87_RS09185at 1944.269 kb on - strand, within ABZR87_RS09185at 1944.673 kb on + strandat 1944.673 kb on + strandat 1944.673 kb on + strandat 1944.674 kb on - strandat 1944.719 kb on - strandat 1944.719 kb on - strandat 1944.769 kb on + strandat 1944.769 kb on + strandat 1944.769 kb on + strandat 1944.770 kb on - strandat 1944.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,941,887 + ABZR87_RS09170 0.60 -0.6
1,942,062 + ABZR87_RS09170 0.68 +0.7
1,942,062 + ABZR87_RS09170 0.68 -1.1
1,942,062 + ABZR87_RS09170 0.68 +0.3
1,942,062 + ABZR87_RS09170 0.68 -1.7
1,942,063 - ABZR87_RS09170 0.68 +0.6
1,942,063 - ABZR87_RS09170 0.68 +0.2
1,942,063 - ABZR87_RS09170 0.68 -0.2
1,942,063 - ABZR87_RS09170 0.68 +2.3
1,942,063 - ABZR87_RS09170 0.68 +0.6
1,942,063 - ABZR87_RS09170 0.68 -1.6
1,942,063 - ABZR87_RS09170 0.68 +0.0
1,942,093 - ABZR87_RS09170 0.69 -2.1
1,942,093 - ABZR87_RS09170 0.69 -1.8
1,942,218 + ABZR87_RS09170 0.75 -0.4
1,942,219 - ABZR87_RS09170 0.75 -0.0
1,942,219 - ABZR87_RS09170 0.75 -1.3
1,942,219 - ABZR87_RS09170 0.75 +0.5
1,942,219 - ABZR87_RS09170 0.75 -2.2
1,942,319 + ABZR87_RS09170 0.79 -1.2
1,942,320 - ABZR87_RS09170 0.79 +1.1
1,942,587 + -1.2
1,942,587 + -0.1
1,942,587 + +0.6
1,942,587 + +0.3
1,942,587 + +0.4
1,942,588 - -1.6
1,942,588 - -1.4
1,942,588 - -1.6
1,942,588 - +0.6
1,942,692 + -2.0
1,942,692 + -0.2
1,942,795 + -1.3
1,942,795 + +0.2
1,942,795 + +0.7
1,942,795 + +1.2
1,942,795 + +0.7
1,942,795 + -0.3
1,942,795 + -0.8
1,942,795 + +2.0
1,942,796 - -0.5
1,942,796 - -0.2
1,942,796 - +1.5
1,942,796 - +0.2
1,942,796 - -0.1
1,942,796 - +0.9
1,942,817 - -0.0
1,942,817 - -0.1
1,942,819 - +0.2
1,942,848 + +2.9
1,942,848 + -2.5
1,942,848 + +1.4
1,942,848 + +0.4
1,942,848 + +1.0
1,942,848 + -0.1
1,942,848 + -0.8
1,942,848 + -1.8
1,942,848 + -0.3
1,942,848 + +1.2
1,942,848 + -0.6
1,942,849 - -0.8
1,942,849 - +0.7
1,942,849 - +0.9
1,942,849 - -0.0
1,942,849 - +0.3
1,942,849 - -0.6
1,942,849 - +1.6
1,942,849 - -0.4
1,942,849 - -2.0
1,942,850 + +3.0
1,942,850 + +0.3
1,942,850 + -0.1
1,942,850 + -0.6
1,942,850 + +0.5
1,942,850 + -0.0
1,942,850 + +1.3
1,942,850 + -1.3
1,942,850 + -0.0
1,942,851 - +0.3
1,942,851 - -0.8
1,942,851 - +1.3
1,942,851 - +0.3
1,942,851 - +1.4
1,942,851 - +0.7
1,942,851 - +3.6
1,942,852 + -0.3
1,942,852 + -1.4
1,942,852 + +1.0
1,942,852 + +1.6
1,942,852 + +1.6
1,942,853 - -0.6
1,942,853 - -0.9
1,942,853 - -1.4
1,942,853 - -1.0
1,942,853 - -1.8
1,942,893 + +0.1
1,942,893 + +1.8
1,942,893 + -0.3
1,942,893 + +1.0
1,942,894 - +0.9
1,942,937 + +0.1
1,942,937 + +0.4
1,942,937 + +1.2
1,942,937 + -0.5
1,942,938 - -0.3
1,942,970 + -0.7
1,942,971 - -0.8
1,942,971 - -0.4
1,943,153 + ABZR87_RS09175 0.30 -2.0
1,943,153 + ABZR87_RS09175 0.30 -1.5
1,943,282 + ABZR87_RS09175 0.44 -0.1
1,943,283 - ABZR87_RS09175 0.44 -2.6
1,943,718 + -0.7
1,943,718 + +1.5
1,943,718 + +0.6
1,943,718 + +0.3
1,943,719 - +0.9
1,943,719 - -1.1
1,943,844 + ABZR87_RS09180 0.14 +0.7
1,943,844 + ABZR87_RS09180 0.14 -1.0
1,943,844 + ABZR87_RS09180 0.14 -0.7
1,943,845 - ABZR87_RS09180 0.15 -1.0
1,943,845 - ABZR87_RS09180 0.15 -0.9
1,944,187 + +0.2
1,944,187 + -2.3
1,944,188 - -1.6
1,944,188 - +0.0
1,944,236 + -1.1
1,944,268 + ABZR87_RS09185 0.12 +2.7
1,944,268 + ABZR87_RS09185 0.12 +0.5
1,944,268 + ABZR87_RS09185 0.12 -0.7
1,944,268 + ABZR87_RS09185 0.12 -1.0
1,944,268 + ABZR87_RS09185 0.12 -0.1
1,944,268 + ABZR87_RS09185 0.12 +1.7
1,944,268 + ABZR87_RS09185 0.12 +0.8
1,944,268 + ABZR87_RS09185 0.12 +0.0
1,944,268 + ABZR87_RS09185 0.12 -0.5
1,944,269 - ABZR87_RS09185 0.12 +0.6
1,944,269 - ABZR87_RS09185 0.12 +2.2
1,944,269 - ABZR87_RS09185 0.12 -1.2
1,944,269 - ABZR87_RS09185 0.12 -0.6
1,944,673 + +0.1
1,944,673 + +1.4
1,944,673 + +0.4
1,944,674 - +0.0
1,944,719 - -1.2
1,944,719 - -0.4
1,944,769 + -0.3
1,944,769 + -0.8
1,944,769 + -1.3
1,944,770 - -1.7
1,944,770 - +0.3

Or see this region's nucleotide sequence