Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09170 and ABZR87_RS09175 are separated by 81 nucleotides ABZR87_RS09175 and ABZR87_RS09180 are separated by 12 nucleotides ABZR87_RS09180 and ABZR87_RS09185 are separated by 97 nucleotides ABZR87_RS09185 and ABZR87_RS09190 are separated by 81 nucleotides
ABZR87_RS09170: ABZR87_RS09170 - AsmA family protein, at 1,940,504 to 1,942,801
_RS09170
ABZR87_RS09175: ABZR87_RS09175 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,942,883 to 1,943,785
_RS09175
ABZR87_RS09180: ABZR87_RS09180 - thioredoxin domain-containing protein, at 1,943,798 to 1,944,121
_RS09180
ABZR87_RS09185: ABZR87_RS09185 - bacteriohemerythrin, at 1,944,219 to 1,944,635
_RS09185
ABZR87_RS09190: ABZR87_RS09190 - DsbA family protein, at 1,944,717 to 1,945,382
_RS09190
Position (kb)
1942
1943
1944 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1941.887 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.093 kb on - strand, within ABZR87_RS09170 at 1942.093 kb on - strand, within ABZR87_RS09170 at 1942.218 kb on + strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.319 kb on + strand, within ABZR87_RS09170 at 1942.320 kb on - strand, within ABZR87_RS09170 at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.588 kb on - strand at 1942.588 kb on - strand at 1942.588 kb on - strand at 1942.588 kb on - strand at 1942.692 kb on + strand at 1942.692 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.817 kb on - strand at 1942.817 kb on - strand at 1942.819 kb on - strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.893 kb on + strand at 1942.893 kb on + strand at 1942.893 kb on + strand at 1942.893 kb on + strand at 1942.894 kb on - strand at 1942.937 kb on + strand at 1942.937 kb on + strand at 1942.937 kb on + strand at 1942.937 kb on + strand at 1942.938 kb on - strand at 1942.970 kb on + strand at 1942.971 kb on - strand at 1942.971 kb on - strand at 1943.153 kb on + strand, within ABZR87_RS09175 at 1943.153 kb on + strand, within ABZR87_RS09175 at 1943.282 kb on + strand, within ABZR87_RS09175 at 1943.283 kb on - strand, within ABZR87_RS09175 at 1943.718 kb on + strand at 1943.718 kb on + strand at 1943.718 kb on + strand at 1943.718 kb on + strand at 1943.719 kb on - strand at 1943.719 kb on - strand at 1943.844 kb on + strand, within ABZR87_RS09180 at 1943.844 kb on + strand, within ABZR87_RS09180 at 1943.844 kb on + strand, within ABZR87_RS09180 at 1943.845 kb on - strand, within ABZR87_RS09180 at 1943.845 kb on - strand, within ABZR87_RS09180 at 1944.187 kb on + strand at 1944.187 kb on + strand at 1944.188 kb on - strand at 1944.188 kb on - strand at 1944.236 kb on + strand at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.673 kb on + strand at 1944.673 kb on + strand at 1944.673 kb on + strand at 1944.674 kb on - strand at 1944.719 kb on - strand at 1944.719 kb on - strand at 1944.769 kb on + strand at 1944.769 kb on + strand at 1944.769 kb on + strand at 1944.770 kb on - strand at 1944.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,941,887 + ABZR87_RS09170 0.60 -0.6 1,942,062 + ABZR87_RS09170 0.68 +0.7 1,942,062 + ABZR87_RS09170 0.68 -1.1 1,942,062 + ABZR87_RS09170 0.68 +0.3 1,942,062 + ABZR87_RS09170 0.68 -1.7 1,942,063 - ABZR87_RS09170 0.68 +0.6 1,942,063 - ABZR87_RS09170 0.68 +0.2 1,942,063 - ABZR87_RS09170 0.68 -0.2 1,942,063 - ABZR87_RS09170 0.68 +2.3 1,942,063 - ABZR87_RS09170 0.68 +0.6 1,942,063 - ABZR87_RS09170 0.68 -1.6 1,942,063 - ABZR87_RS09170 0.68 +0.0 1,942,093 - ABZR87_RS09170 0.69 -2.1 1,942,093 - ABZR87_RS09170 0.69 -1.8 1,942,218 + ABZR87_RS09170 0.75 -0.4 1,942,219 - ABZR87_RS09170 0.75 -0.0 1,942,219 - ABZR87_RS09170 0.75 -1.3 1,942,219 - ABZR87_RS09170 0.75 +0.5 1,942,219 - ABZR87_RS09170 0.75 -2.2 1,942,319 + ABZR87_RS09170 0.79 -1.2 1,942,320 - ABZR87_RS09170 0.79 +1.1 1,942,587 + -1.2 1,942,587 + -0.1 1,942,587 + +0.6 1,942,587 + +0.3 1,942,587 + +0.4 1,942,588 - -1.6 1,942,588 - -1.4 1,942,588 - -1.6 1,942,588 - +0.6 1,942,692 + -2.0 1,942,692 + -0.2 1,942,795 + -1.3 1,942,795 + +0.2 1,942,795 + +0.7 1,942,795 + +1.2 1,942,795 + +0.7 1,942,795 + -0.3 1,942,795 + -0.8 1,942,795 + +2.0 1,942,796 - -0.5 1,942,796 - -0.2 1,942,796 - +1.5 1,942,796 - +0.2 1,942,796 - -0.1 1,942,796 - +0.9 1,942,817 - -0.0 1,942,817 - -0.1 1,942,819 - +0.2 1,942,848 + +2.9 1,942,848 + -2.5 1,942,848 + +1.4 1,942,848 + +0.4 1,942,848 + +1.0 1,942,848 + -0.1 1,942,848 + -0.8 1,942,848 + -1.8 1,942,848 + -0.3 1,942,848 + +1.2 1,942,848 + -0.6 1,942,849 - -0.8 1,942,849 - +0.7 1,942,849 - +0.9 1,942,849 - -0.0 1,942,849 - +0.3 1,942,849 - -0.6 1,942,849 - +1.6 1,942,849 - -0.4 1,942,849 - -2.0 1,942,850 + +3.0 1,942,850 + +0.3 1,942,850 + -0.1 1,942,850 + -0.6 1,942,850 + +0.5 1,942,850 + -0.0 1,942,850 + +1.3 1,942,850 + -1.3 1,942,850 + -0.0 1,942,851 - +0.3 1,942,851 - -0.8 1,942,851 - +1.3 1,942,851 - +0.3 1,942,851 - +1.4 1,942,851 - +0.7 1,942,851 - +3.6 1,942,852 + -0.3 1,942,852 + -1.4 1,942,852 + +1.0 1,942,852 + +1.6 1,942,852 + +1.6 1,942,853 - -0.6 1,942,853 - -0.9 1,942,853 - -1.4 1,942,853 - -1.0 1,942,853 - -1.8 1,942,893 + +0.1 1,942,893 + +1.8 1,942,893 + -0.3 1,942,893 + +1.0 1,942,894 - +0.9 1,942,937 + +0.1 1,942,937 + +0.4 1,942,937 + +1.2 1,942,937 + -0.5 1,942,938 - -0.3 1,942,970 + -0.7 1,942,971 - -0.8 1,942,971 - -0.4 1,943,153 + ABZR87_RS09175 0.30 -2.0 1,943,153 + ABZR87_RS09175 0.30 -1.5 1,943,282 + ABZR87_RS09175 0.44 -0.1 1,943,283 - ABZR87_RS09175 0.44 -2.6 1,943,718 + -0.7 1,943,718 + +1.5 1,943,718 + +0.6 1,943,718 + +0.3 1,943,719 - +0.9 1,943,719 - -1.1 1,943,844 + ABZR87_RS09180 0.14 +0.7 1,943,844 + ABZR87_RS09180 0.14 -1.0 1,943,844 + ABZR87_RS09180 0.14 -0.7 1,943,845 - ABZR87_RS09180 0.15 -1.0 1,943,845 - ABZR87_RS09180 0.15 -0.9 1,944,187 + +0.2 1,944,187 + -2.3 1,944,188 - -1.6 1,944,188 - +0.0 1,944,236 + -1.1 1,944,268 + ABZR87_RS09185 0.12 +2.7 1,944,268 + ABZR87_RS09185 0.12 +0.5 1,944,268 + ABZR87_RS09185 0.12 -0.7 1,944,268 + ABZR87_RS09185 0.12 -1.0 1,944,268 + ABZR87_RS09185 0.12 -0.1 1,944,268 + ABZR87_RS09185 0.12 +1.7 1,944,268 + ABZR87_RS09185 0.12 +0.8 1,944,268 + ABZR87_RS09185 0.12 +0.0 1,944,268 + ABZR87_RS09185 0.12 -0.5 1,944,269 - ABZR87_RS09185 0.12 +0.6 1,944,269 - ABZR87_RS09185 0.12 +2.2 1,944,269 - ABZR87_RS09185 0.12 -1.2 1,944,269 - ABZR87_RS09185 0.12 -0.6 1,944,673 + +0.1 1,944,673 + +1.4 1,944,673 + +0.4 1,944,674 - +0.0 1,944,719 - -1.2 1,944,719 - -0.4 1,944,769 + -0.3 1,944,769 + -0.8 1,944,769 + -1.3 1,944,770 - -1.7 1,944,770 - +0.3
Or see this region's nucleotide sequence