Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07970 and ABZR87_RS07975 are separated by 291 nucleotides ABZR87_RS07975 and ABZR87_RS07980 are separated by 66 nucleotides ABZR87_RS07980 and ABZR87_RS07985 are separated by 94 nucleotides
ABZR87_RS07970: ABZR87_RS07970 - recombination regulator RecX, at 1,694,673 to 1,695,152
_RS07970
ABZR87_RS07975: ABZR87_RS07975 - DUF2889 domain-containing protein, at 1,695,444 to 1,696,070
_RS07975
ABZR87_RS07980: ABZR87_RS07980 - ADP-forming succinate--CoA ligase subunit beta, at 1,696,137 to 1,697,303
_RS07980
ABZR87_RS07985: ABZR87_RS07985 - succinate--CoA ligase subunit alpha, at 1,697,398 to 1,698,279
_RS07985
Position (kb)
1696
1697
1698 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1695.341 kb on + strand at 1695.341 kb on + strand at 1695.341 kb on + strand at 1695.341 kb on + strand at 1695.375 kb on + strand at 1695.375 kb on + strand at 1695.375 kb on + strand at 1695.375 kb on + strand at 1695.375 kb on + strand at 1695.375 kb on + strand at 1695.426 kb on + strand at 1695.507 kb on + strand, within ABZR87_RS07975 at 1695.569 kb on + strand, within ABZR87_RS07975 at 1695.806 kb on + strand, within ABZR87_RS07975 at 1695.887 kb on + strand, within ABZR87_RS07975 at 1695.933 kb on + strand, within ABZR87_RS07975 at 1696.008 kb on + strand at 1696.008 kb on + strand at 1696.009 kb on - strand at 1696.099 kb on - strand at 1696.111 kb on + strand at 1696.111 kb on + strand at 1696.111 kb on + strand at 1696.111 kb on + strand at 1696.111 kb on + strand at 1696.120 kb on + strand at 1696.143 kb on - strand at 1696.152 kb on + strand at 1696.153 kb on - strand at 1697.301 kb on + strand at 1697.301 kb on + strand at 1697.324 kb on + strand at 1697.351 kb on + strand at 1697.361 kb on + strand at 1697.383 kb on + strand at 1697.383 kb on + strand at 1697.393 kb on - strand at 1697.567 kb on - strand, within ABZR87_RS07985 at 1698.278 kb on - strand at 1698.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,695,341 + -2.1 1,695,341 + -2.1 1,695,341 + -0.4 1,695,341 + +0.8 1,695,375 + -0.5 1,695,375 + -0.9 1,695,375 + +0.9 1,695,375 + +0.7 1,695,375 + -2.1 1,695,375 + -0.2 1,695,426 + -1.5 1,695,507 + ABZR87_RS07975 0.10 -1.5 1,695,569 + ABZR87_RS07975 0.20 +0.7 1,695,806 + ABZR87_RS07975 0.58 -1.0 1,695,887 + ABZR87_RS07975 0.71 +1.1 1,695,933 + ABZR87_RS07975 0.78 +0.9 1,696,008 + -0.4 1,696,008 + +1.1 1,696,009 - +1.3 1,696,099 - +0.6 1,696,111 + +0.0 1,696,111 + -0.7 1,696,111 + -0.4 1,696,111 + +1.5 1,696,111 + +2.6 1,696,120 + +0.3 1,696,143 - +1.8 1,696,152 + +0.0 1,696,153 - -0.7 1,697,301 + -1.1 1,697,301 + -0.7 1,697,324 + +1.6 1,697,351 + +1.8 1,697,361 + -0.4 1,697,383 + +0.1 1,697,383 + +0.3 1,697,393 - +1.3 1,697,567 - ABZR87_RS07985 0.19 -0.7 1,698,278 - +0.5 1,698,278 - -1.4
Or see this region's nucleotide sequence