Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07310 and ABZR87_RS07315 are separated by 54 nucleotides ABZR87_RS07315 and ABZR87_RS07320 are separated by 16 nucleotides ABZR87_RS07320 and ABZR87_RS07325 are separated by 232 nucleotides
ABZR87_RS07310: ABZR87_RS07310 - alpha/beta hydrolase, at 1,546,740 to 1,547,711
_RS07310
ABZR87_RS07315: ABZR87_RS07315 - hypothetical protein, at 1,547,766 to 1,548,560
_RS07315
ABZR87_RS07320: ABZR87_RS07320 - gluconokinase, at 1,548,577 to 1,549,086
_RS07320
ABZR87_RS07325: ABZR87_RS07325 - AMP-binding protein, at 1,549,319 to 1,551,034
_RS07325
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1547.598 kb on + strand, within ABZR87_RS07310 at 1547.598 kb on + strand, within ABZR87_RS07310 at 1547.599 kb on - strand, within ABZR87_RS07310 at 1547.599 kb on - strand, within ABZR87_RS07310 at 1547.599 kb on - strand, within ABZR87_RS07310 at 1547.599 kb on - strand, within ABZR87_RS07310 at 1547.782 kb on + strand at 1547.782 kb on + strand at 1547.782 kb on + strand at 1547.783 kb on - strand at 1547.783 kb on - strand at 1547.783 kb on - strand at 1547.783 kb on - strand at 1547.783 kb on - strand at 1547.978 kb on - strand, within ABZR87_RS07315 at 1547.978 kb on - strand, within ABZR87_RS07315 at 1547.978 kb on - strand, within ABZR87_RS07315 at 1548.057 kb on + strand, within ABZR87_RS07315 at 1548.090 kb on + strand, within ABZR87_RS07315 at 1548.090 kb on + strand, within ABZR87_RS07315 at 1548.090 kb on + strand, within ABZR87_RS07315 at 1548.090 kb on + strand, within ABZR87_RS07315 at 1548.090 kb on + strand, within ABZR87_RS07315 at 1548.090 kb on + strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.091 kb on - strand, within ABZR87_RS07315 at 1548.130 kb on - strand, within ABZR87_RS07315 at 1548.130 kb on - strand, within ABZR87_RS07315 at 1548.250 kb on - strand, within ABZR87_RS07315 at 1548.363 kb on + strand, within ABZR87_RS07315 at 1548.364 kb on - strand, within ABZR87_RS07315 at 1548.397 kb on + strand, within ABZR87_RS07315 at 1548.397 kb on + strand, within ABZR87_RS07315 at 1548.398 kb on - strand, within ABZR87_RS07315 at 1548.398 kb on - strand, within ABZR87_RS07315 at 1548.398 kb on - strand, within ABZR87_RS07315 at 1548.480 kb on - strand, within ABZR87_RS07315 at 1548.558 kb on + strand at 1548.558 kb on + strand at 1548.559 kb on - strand at 1548.770 kb on - strand, within ABZR87_RS07320 at 1548.785 kb on + strand, within ABZR87_RS07320 at 1548.820 kb on + strand, within ABZR87_RS07320 at 1548.820 kb on + strand, within ABZR87_RS07320 at 1548.820 kb on + strand, within ABZR87_RS07320 at 1548.820 kb on + strand, within ABZR87_RS07320 at 1548.820 kb on + strand, within ABZR87_RS07320 at 1548.821 kb on - strand, within ABZR87_RS07320 at 1548.821 kb on - strand, within ABZR87_RS07320 at 1548.821 kb on - strand, within ABZR87_RS07320 at 1548.821 kb on - strand, within ABZR87_RS07320 at 1548.896 kb on + strand, within ABZR87_RS07320 at 1548.896 kb on + strand, within ABZR87_RS07320 at 1548.897 kb on - strand, within ABZR87_RS07320 at 1548.897 kb on - strand, within ABZR87_RS07320 at 1548.897 kb on - strand, within ABZR87_RS07320 at 1548.897 kb on - strand, within ABZR87_RS07320 at 1548.897 kb on - strand, within ABZR87_RS07320 at 1549.075 kb on + strand at 1549.075 kb on - strand at 1549.076 kb on - strand at 1549.076 kb on - strand at 1549.078 kb on + strand at 1549.078 kb on + strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.079 kb on - strand at 1549.097 kb on + strand at 1549.097 kb on + strand at 1549.097 kb on + strand at 1549.097 kb on + strand at 1549.097 kb on + strand at 1549.098 kb on - strand at 1549.262 kb on + strand at 1549.263 kb on - strand at 1549.263 kb on - strand at 1549.364 kb on + strand at 1549.364 kb on + strand at 1549.364 kb on + strand at 1549.364 kb on + strand at 1549.364 kb on + strand at 1549.364 kb on + strand at 1549.365 kb on - strand at 1549.365 kb on - strand at 1549.365 kb on - strand at 1549.365 kb on - strand at 1549.365 kb on - strand at 1549.378 kb on + strand at 1549.427 kb on - strand at 1549.462 kb on - strand at 1549.462 kb on - strand at 1549.679 kb on + strand, within ABZR87_RS07325 at 1549.680 kb on - strand, within ABZR87_RS07325 at 1549.680 kb on - strand, within ABZR87_RS07325 at 1549.702 kb on + strand, within ABZR87_RS07325 at 1549.703 kb on - strand, within ABZR87_RS07325 at 1549.703 kb on - strand, within ABZR87_RS07325 at 1549.742 kb on + strand, within ABZR87_RS07325 at 1549.855 kb on + strand, within ABZR87_RS07325 at 1549.856 kb on - strand, within ABZR87_RS07325 at 1549.906 kb on - strand, within ABZR87_RS07325
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,547,598 + ABZR87_RS07310 0.88 -1.3 1,547,598 + ABZR87_RS07310 0.88 +2.1 1,547,599 - ABZR87_RS07310 0.88 -0.6 1,547,599 - ABZR87_RS07310 0.88 +0.6 1,547,599 - ABZR87_RS07310 0.88 -0.5 1,547,599 - ABZR87_RS07310 0.88 -0.8 1,547,782 + -2.2 1,547,782 + +0.6 1,547,782 + +1.7 1,547,783 - -0.6 1,547,783 - +0.7 1,547,783 - +1.1 1,547,783 - -1.1 1,547,783 - +0.5 1,547,978 - ABZR87_RS07315 0.27 -0.2 1,547,978 - ABZR87_RS07315 0.27 +0.2 1,547,978 - ABZR87_RS07315 0.27 +1.1 1,548,057 + ABZR87_RS07315 0.37 +3.5 1,548,090 + ABZR87_RS07315 0.41 -0.8 1,548,090 + ABZR87_RS07315 0.41 -0.3 1,548,090 + ABZR87_RS07315 0.41 -0.1 1,548,090 + ABZR87_RS07315 0.41 -0.1 1,548,090 + ABZR87_RS07315 0.41 +1.4 1,548,090 + ABZR87_RS07315 0.41 -2.2 1,548,091 - ABZR87_RS07315 0.41 -1.1 1,548,091 - ABZR87_RS07315 0.41 +0.0 1,548,091 - ABZR87_RS07315 0.41 -0.4 1,548,091 - ABZR87_RS07315 0.41 -2.5 1,548,091 - ABZR87_RS07315 0.41 +4.1 1,548,091 - ABZR87_RS07315 0.41 +1.7 1,548,091 - ABZR87_RS07315 0.41 +0.6 1,548,130 - ABZR87_RS07315 0.46 +0.9 1,548,130 - ABZR87_RS07315 0.46 +1.4 1,548,250 - ABZR87_RS07315 0.61 +0.5 1,548,363 + ABZR87_RS07315 0.75 -0.6 1,548,364 - ABZR87_RS07315 0.75 +0.2 1,548,397 + ABZR87_RS07315 0.79 +0.6 1,548,397 + ABZR87_RS07315 0.79 -0.6 1,548,398 - ABZR87_RS07315 0.79 -0.6 1,548,398 - ABZR87_RS07315 0.79 +0.2 1,548,398 - ABZR87_RS07315 0.79 -0.9 1,548,480 - ABZR87_RS07315 0.90 +0.6 1,548,558 + -1.8 1,548,558 + -0.3 1,548,559 - +0.1 1,548,770 - ABZR87_RS07320 0.38 +0.5 1,548,785 + ABZR87_RS07320 0.41 -1.0 1,548,820 + ABZR87_RS07320 0.48 -1.2 1,548,820 + ABZR87_RS07320 0.48 -0.2 1,548,820 + ABZR87_RS07320 0.48 -0.1 1,548,820 + ABZR87_RS07320 0.48 -2.3 1,548,820 + ABZR87_RS07320 0.48 -0.7 1,548,821 - ABZR87_RS07320 0.48 +0.4 1,548,821 - ABZR87_RS07320 0.48 -2.5 1,548,821 - ABZR87_RS07320 0.48 -1.4 1,548,821 - ABZR87_RS07320 0.48 -1.0 1,548,896 + ABZR87_RS07320 0.63 -0.9 1,548,896 + ABZR87_RS07320 0.63 -0.4 1,548,897 - ABZR87_RS07320 0.63 +0.8 1,548,897 - ABZR87_RS07320 0.63 -2.1 1,548,897 - ABZR87_RS07320 0.63 -1.0 1,548,897 - ABZR87_RS07320 0.63 -1.3 1,548,897 - ABZR87_RS07320 0.63 +0.2 1,549,075 + -0.1 1,549,075 - -0.1 1,549,076 - -1.3 1,549,076 - -2.8 1,549,078 + -1.1 1,549,078 + +1.0 1,549,079 - -0.2 1,549,079 - -2.4 1,549,079 - -0.5 1,549,079 - -1.1 1,549,079 - -1.6 1,549,079 - +0.1 1,549,079 - -2.3 1,549,079 - -1.5 1,549,079 - -2.2 1,549,097 + -0.5 1,549,097 + -1.9 1,549,097 + -1.1 1,549,097 + -1.2 1,549,097 + -0.6 1,549,098 - +1.7 1,549,262 + +1.1 1,549,263 - -0.6 1,549,263 - +0.3 1,549,364 + -1.6 1,549,364 + -1.1 1,549,364 + +0.2 1,549,364 + -1.9 1,549,364 + -0.2 1,549,364 + -0.1 1,549,365 - -0.1 1,549,365 - -1.8 1,549,365 - -1.4 1,549,365 - -0.9 1,549,365 - -0.2 1,549,378 + -1.6 1,549,427 - +0.6 1,549,462 - -0.6 1,549,462 - -0.7 1,549,679 + ABZR87_RS07325 0.21 +3.1 1,549,680 - ABZR87_RS07325 0.21 -0.9 1,549,680 - ABZR87_RS07325 0.21 -0.5 1,549,702 + ABZR87_RS07325 0.22 +1.5 1,549,703 - ABZR87_RS07325 0.22 +2.0 1,549,703 - ABZR87_RS07325 0.22 -1.3 1,549,742 + ABZR87_RS07325 0.25 +0.0 1,549,855 + ABZR87_RS07325 0.31 -0.6 1,549,856 - ABZR87_RS07325 0.31 +1.1 1,549,906 - ABZR87_RS07325 0.34 -1.7
Or see this region's nucleotide sequence