Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07320

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07310 and ABZR87_RS07315 are separated by 54 nucleotidesABZR87_RS07315 and ABZR87_RS07320 are separated by 16 nucleotidesABZR87_RS07320 and ABZR87_RS07325 are separated by 232 nucleotides ABZR87_RS07310: ABZR87_RS07310 - alpha/beta hydrolase, at 1,546,740 to 1,547,711 _RS07310 ABZR87_RS07315: ABZR87_RS07315 - hypothetical protein, at 1,547,766 to 1,548,560 _RS07315 ABZR87_RS07320: ABZR87_RS07320 - gluconokinase, at 1,548,577 to 1,549,086 _RS07320 ABZR87_RS07325: ABZR87_RS07325 - AMP-binding protein, at 1,549,319 to 1,551,034 _RS07325 Position (kb) 1548 1549 1550Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1547.598 kb on + strand, within ABZR87_RS07310at 1547.598 kb on + strand, within ABZR87_RS07310at 1547.599 kb on - strand, within ABZR87_RS07310at 1547.599 kb on - strand, within ABZR87_RS07310at 1547.599 kb on - strand, within ABZR87_RS07310at 1547.599 kb on - strand, within ABZR87_RS07310at 1547.782 kb on + strandat 1547.782 kb on + strandat 1547.782 kb on + strandat 1547.783 kb on - strandat 1547.783 kb on - strandat 1547.783 kb on - strandat 1547.783 kb on - strandat 1547.783 kb on - strandat 1547.978 kb on - strand, within ABZR87_RS07315at 1547.978 kb on - strand, within ABZR87_RS07315at 1547.978 kb on - strand, within ABZR87_RS07315at 1548.057 kb on + strand, within ABZR87_RS07315at 1548.090 kb on + strand, within ABZR87_RS07315at 1548.090 kb on + strand, within ABZR87_RS07315at 1548.090 kb on + strand, within ABZR87_RS07315at 1548.090 kb on + strand, within ABZR87_RS07315at 1548.090 kb on + strand, within ABZR87_RS07315at 1548.090 kb on + strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.091 kb on - strand, within ABZR87_RS07315at 1548.130 kb on - strand, within ABZR87_RS07315at 1548.130 kb on - strand, within ABZR87_RS07315at 1548.250 kb on - strand, within ABZR87_RS07315at 1548.363 kb on + strand, within ABZR87_RS07315at 1548.364 kb on - strand, within ABZR87_RS07315at 1548.397 kb on + strand, within ABZR87_RS07315at 1548.397 kb on + strand, within ABZR87_RS07315at 1548.398 kb on - strand, within ABZR87_RS07315at 1548.398 kb on - strand, within ABZR87_RS07315at 1548.398 kb on - strand, within ABZR87_RS07315at 1548.480 kb on - strand, within ABZR87_RS07315at 1548.558 kb on + strandat 1548.558 kb on + strandat 1548.559 kb on - strandat 1548.770 kb on - strand, within ABZR87_RS07320at 1548.785 kb on + strand, within ABZR87_RS07320at 1548.820 kb on + strand, within ABZR87_RS07320at 1548.820 kb on + strand, within ABZR87_RS07320at 1548.820 kb on + strand, within ABZR87_RS07320at 1548.820 kb on + strand, within ABZR87_RS07320at 1548.820 kb on + strand, within ABZR87_RS07320at 1548.821 kb on - strand, within ABZR87_RS07320at 1548.821 kb on - strand, within ABZR87_RS07320at 1548.821 kb on - strand, within ABZR87_RS07320at 1548.821 kb on - strand, within ABZR87_RS07320at 1548.896 kb on + strand, within ABZR87_RS07320at 1548.896 kb on + strand, within ABZR87_RS07320at 1548.897 kb on - strand, within ABZR87_RS07320at 1548.897 kb on - strand, within ABZR87_RS07320at 1548.897 kb on - strand, within ABZR87_RS07320at 1548.897 kb on - strand, within ABZR87_RS07320at 1548.897 kb on - strand, within ABZR87_RS07320at 1549.075 kb on + strandat 1549.075 kb on - strandat 1549.076 kb on - strandat 1549.076 kb on - strandat 1549.078 kb on + strandat 1549.078 kb on + strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.079 kb on - strandat 1549.097 kb on + strandat 1549.097 kb on + strandat 1549.097 kb on + strandat 1549.097 kb on + strandat 1549.097 kb on + strandat 1549.098 kb on - strandat 1549.262 kb on + strandat 1549.263 kb on - strandat 1549.263 kb on - strandat 1549.364 kb on + strandat 1549.364 kb on + strandat 1549.364 kb on + strandat 1549.364 kb on + strandat 1549.364 kb on + strandat 1549.364 kb on + strandat 1549.365 kb on - strandat 1549.365 kb on - strandat 1549.365 kb on - strandat 1549.365 kb on - strandat 1549.365 kb on - strandat 1549.378 kb on + strandat 1549.427 kb on - strandat 1549.462 kb on - strandat 1549.462 kb on - strandat 1549.679 kb on + strand, within ABZR87_RS07325at 1549.680 kb on - strand, within ABZR87_RS07325at 1549.680 kb on - strand, within ABZR87_RS07325at 1549.702 kb on + strand, within ABZR87_RS07325at 1549.703 kb on - strand, within ABZR87_RS07325at 1549.703 kb on - strand, within ABZR87_RS07325at 1549.742 kb on + strand, within ABZR87_RS07325at 1549.855 kb on + strand, within ABZR87_RS07325at 1549.856 kb on - strand, within ABZR87_RS07325at 1549.906 kb on - strand, within ABZR87_RS07325

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,547,598 + ABZR87_RS07310 0.88 -1.3
1,547,598 + ABZR87_RS07310 0.88 +2.1
1,547,599 - ABZR87_RS07310 0.88 -0.6
1,547,599 - ABZR87_RS07310 0.88 +0.6
1,547,599 - ABZR87_RS07310 0.88 -0.5
1,547,599 - ABZR87_RS07310 0.88 -0.8
1,547,782 + -2.2
1,547,782 + +0.6
1,547,782 + +1.7
1,547,783 - -0.6
1,547,783 - +0.7
1,547,783 - +1.1
1,547,783 - -1.1
1,547,783 - +0.5
1,547,978 - ABZR87_RS07315 0.27 -0.2
1,547,978 - ABZR87_RS07315 0.27 +0.2
1,547,978 - ABZR87_RS07315 0.27 +1.1
1,548,057 + ABZR87_RS07315 0.37 +3.5
1,548,090 + ABZR87_RS07315 0.41 -0.8
1,548,090 + ABZR87_RS07315 0.41 -0.3
1,548,090 + ABZR87_RS07315 0.41 -0.1
1,548,090 + ABZR87_RS07315 0.41 -0.1
1,548,090 + ABZR87_RS07315 0.41 +1.4
1,548,090 + ABZR87_RS07315 0.41 -2.2
1,548,091 - ABZR87_RS07315 0.41 -1.1
1,548,091 - ABZR87_RS07315 0.41 +0.0
1,548,091 - ABZR87_RS07315 0.41 -0.4
1,548,091 - ABZR87_RS07315 0.41 -2.5
1,548,091 - ABZR87_RS07315 0.41 +4.1
1,548,091 - ABZR87_RS07315 0.41 +1.7
1,548,091 - ABZR87_RS07315 0.41 +0.6
1,548,130 - ABZR87_RS07315 0.46 +0.9
1,548,130 - ABZR87_RS07315 0.46 +1.4
1,548,250 - ABZR87_RS07315 0.61 +0.5
1,548,363 + ABZR87_RS07315 0.75 -0.6
1,548,364 - ABZR87_RS07315 0.75 +0.2
1,548,397 + ABZR87_RS07315 0.79 +0.6
1,548,397 + ABZR87_RS07315 0.79 -0.6
1,548,398 - ABZR87_RS07315 0.79 -0.6
1,548,398 - ABZR87_RS07315 0.79 +0.2
1,548,398 - ABZR87_RS07315 0.79 -0.9
1,548,480 - ABZR87_RS07315 0.90 +0.6
1,548,558 + -1.8
1,548,558 + -0.3
1,548,559 - +0.1
1,548,770 - ABZR87_RS07320 0.38 +0.5
1,548,785 + ABZR87_RS07320 0.41 -1.0
1,548,820 + ABZR87_RS07320 0.48 -1.2
1,548,820 + ABZR87_RS07320 0.48 -0.2
1,548,820 + ABZR87_RS07320 0.48 -0.1
1,548,820 + ABZR87_RS07320 0.48 -2.3
1,548,820 + ABZR87_RS07320 0.48 -0.7
1,548,821 - ABZR87_RS07320 0.48 +0.4
1,548,821 - ABZR87_RS07320 0.48 -2.5
1,548,821 - ABZR87_RS07320 0.48 -1.4
1,548,821 - ABZR87_RS07320 0.48 -1.0
1,548,896 + ABZR87_RS07320 0.63 -0.9
1,548,896 + ABZR87_RS07320 0.63 -0.4
1,548,897 - ABZR87_RS07320 0.63 +0.8
1,548,897 - ABZR87_RS07320 0.63 -2.1
1,548,897 - ABZR87_RS07320 0.63 -1.0
1,548,897 - ABZR87_RS07320 0.63 -1.3
1,548,897 - ABZR87_RS07320 0.63 +0.2
1,549,075 + -0.1
1,549,075 - -0.1
1,549,076 - -1.3
1,549,076 - -2.8
1,549,078 + -1.1
1,549,078 + +1.0
1,549,079 - -0.2
1,549,079 - -2.4
1,549,079 - -0.5
1,549,079 - -1.1
1,549,079 - -1.6
1,549,079 - +0.1
1,549,079 - -2.3
1,549,079 - -1.5
1,549,079 - -2.2
1,549,097 + -0.5
1,549,097 + -1.9
1,549,097 + -1.1
1,549,097 + -1.2
1,549,097 + -0.6
1,549,098 - +1.7
1,549,262 + +1.1
1,549,263 - -0.6
1,549,263 - +0.3
1,549,364 + -1.6
1,549,364 + -1.1
1,549,364 + +0.2
1,549,364 + -1.9
1,549,364 + -0.2
1,549,364 + -0.1
1,549,365 - -0.1
1,549,365 - -1.8
1,549,365 - -1.4
1,549,365 - -0.9
1,549,365 - -0.2
1,549,378 + -1.6
1,549,427 - +0.6
1,549,462 - -0.6
1,549,462 - -0.7
1,549,679 + ABZR87_RS07325 0.21 +3.1
1,549,680 - ABZR87_RS07325 0.21 -0.9
1,549,680 - ABZR87_RS07325 0.21 -0.5
1,549,702 + ABZR87_RS07325 0.22 +1.5
1,549,703 - ABZR87_RS07325 0.22 +2.0
1,549,703 - ABZR87_RS07325 0.22 -1.3
1,549,742 + ABZR87_RS07325 0.25 +0.0
1,549,855 + ABZR87_RS07325 0.31 -0.6
1,549,856 - ABZR87_RS07325 0.31 +1.1
1,549,906 - ABZR87_RS07325 0.34 -1.7

Or see this region's nucleotide sequence