Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07015 and ABZR87_RS07020 are separated by 291 nucleotides ABZR87_RS07020 and ABZR87_RS07025 are separated by 103 nucleotides
ABZR87_RS07015: ABZR87_RS07015 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 1,481,381 to 1,482,256
_RS07015
ABZR87_RS07020: ABZR87_RS07020 - dynamin-like GTPase family protein, at 1,482,548 to 1,484,491
_RS07020
ABZR87_RS07025: ABZR87_RS07025 - A/G-specific adenine glycosylase, at 1,484,595 to 1,485,743
_RS07025
Position (kb) 1482
1483
1484
1485 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1481.555 kb on + strand, within ABZR87_RS07015 at 1481.555 kb on + strand, within ABZR87_RS07015 at 1481.555 kb on + strand, within ABZR87_RS07015 at 1481.555 kb on + strand, within ABZR87_RS07015 at 1481.556 kb on - strand, within ABZR87_RS07015 at 1481.556 kb on - strand, within ABZR87_RS07015 at 1481.556 kb on - strand, within ABZR87_RS07015 at 1481.556 kb on - strand, within ABZR87_RS07015 at 1481.556 kb on - strand, within ABZR87_RS07015 at 1481.650 kb on + strand, within ABZR87_RS07015 at 1481.651 kb on - strand, within ABZR87_RS07015 at 1481.706 kb on + strand, within ABZR87_RS07015 at 1481.730 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.953 kb on + strand, within ABZR87_RS07015 at 1481.954 kb on - strand, within ABZR87_RS07015 at 1481.954 kb on - strand, within ABZR87_RS07015 at 1481.954 kb on - strand, within ABZR87_RS07015 at 1481.954 kb on - strand, within ABZR87_RS07015 at 1481.954 kb on - strand, within ABZR87_RS07015 at 1481.954 kb on - strand, within ABZR87_RS07015 at 1481.955 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.957 kb on + strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1481.958 kb on - strand, within ABZR87_RS07015 at 1482.029 kb on + strand, within ABZR87_RS07015 at 1482.131 kb on + strand, within ABZR87_RS07015 at 1482.132 kb on - strand, within ABZR87_RS07015 at 1482.132 kb on - strand, within ABZR87_RS07015 at 1482.155 kb on + strand, within ABZR87_RS07015 at 1482.156 kb on - strand, within ABZR87_RS07015 at 1482.233 kb on + strand at 1482.233 kb on + strand at 1482.233 kb on + strand at 1482.234 kb on - strand at 1482.234 kb on - strand at 1482.310 kb on + strand at 1482.310 kb on + strand at 1482.310 kb on + strand at 1482.311 kb on - strand at 1482.311 kb on - strand at 1482.432 kb on + strand at 1482.433 kb on - strand at 1482.433 kb on - strand at 1482.433 kb on - strand at 1482.444 kb on + strand at 1482.444 kb on + strand at 1482.445 kb on - strand at 1482.467 kb on + strand at 1482.467 kb on + strand at 1482.468 kb on - strand at 1482.468 kb on - strand at 1482.478 kb on + strand at 1482.536 kb on + strand at 1482.537 kb on - strand at 1482.537 kb on - strand at 1482.537 kb on - strand at 1482.537 kb on - strand at 1482.537 kb on - strand at 1482.581 kb on + strand at 1482.581 kb on + strand at 1482.581 kb on + strand at 1482.581 kb on + strand at 1482.582 kb on - strand at 1482.582 kb on - strand at 1482.604 kb on - strand at 1482.653 kb on + strand at 1482.653 kb on + strand at 1482.654 kb on - strand at 1482.654 kb on - strand at 1482.654 kb on - strand at 1482.654 kb on - strand at 1482.848 kb on + strand, within ABZR87_RS07020 at 1482.848 kb on + strand, within ABZR87_RS07020 at 1482.848 kb on + strand, within ABZR87_RS07020 at 1482.849 kb on - strand, within ABZR87_RS07020 at 1482.849 kb on - strand, within ABZR87_RS07020 at 1482.849 kb on - strand, within ABZR87_RS07020 at 1482.849 kb on - strand, within ABZR87_RS07020 at 1482.861 kb on - strand, within ABZR87_RS07020 at 1482.861 kb on - strand, within ABZR87_RS07020 at 1483.055 kb on + strand, within ABZR87_RS07020 at 1483.055 kb on + strand, within ABZR87_RS07020 at 1483.055 kb on + strand, within ABZR87_RS07020 at 1483.056 kb on - strand, within ABZR87_RS07020 at 1483.056 kb on - strand, within ABZR87_RS07020 at 1483.056 kb on - strand, within ABZR87_RS07020 at 1483.056 kb on - strand, within ABZR87_RS07020 at 1483.056 kb on - strand, within ABZR87_RS07020 at 1483.058 kb on - strand, within ABZR87_RS07020 at 1483.843 kb on + strand, within ABZR87_RS07020 at 1483.843 kb on + strand, within ABZR87_RS07020 at 1483.844 kb on - strand, within ABZR87_RS07020 at 1483.844 kb on - strand, within ABZR87_RS07020 at 1483.844 kb on - strand, within ABZR87_RS07020 at 1483.844 kb on - strand, within ABZR87_RS07020 at 1483.844 kb on - strand, within ABZR87_RS07020 at 1484.024 kb on + strand, within ABZR87_RS07020 at 1484.024 kb on + strand, within ABZR87_RS07020 at 1484.024 kb on + strand, within ABZR87_RS07020 at 1484.024 kb on + strand, within ABZR87_RS07020 at 1484.024 kb on + strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.025 kb on - strand, within ABZR87_RS07020 at 1484.090 kb on + strand, within ABZR87_RS07020 at 1484.091 kb on - strand, within ABZR87_RS07020 at 1484.357 kb on - strand at 1484.432 kb on + strand at 1484.432 kb on + strand at 1484.432 kb on + strand at 1484.432 kb on + strand at 1484.432 kb on + strand at 1484.433 kb on - strand at 1484.433 kb on - strand at 1484.433 kb on - strand at 1484.544 kb on + strand at 1484.544 kb on + strand at 1484.544 kb on + strand at 1484.545 kb on - strand at 1484.645 kb on - strand at 1484.645 kb on - strand at 1484.802 kb on + strand, within ABZR87_RS07025 at 1484.803 kb on - strand, within ABZR87_RS07025 at 1484.805 kb on + strand, within ABZR87_RS07025 at 1484.805 kb on + strand, within ABZR87_RS07025 at 1484.805 kb on + strand, within ABZR87_RS07025 at 1484.805 kb on + strand, within ABZR87_RS07025 at 1484.805 kb on + strand, within ABZR87_RS07025 at 1484.805 kb on + strand, within ABZR87_RS07025 at 1484.806 kb on - strand, within ABZR87_RS07025 at 1484.806 kb on - strand, within ABZR87_RS07025 at 1484.895 kb on + strand, within ABZR87_RS07025 at 1484.898 kb on + strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.899 kb on - strand, within ABZR87_RS07025 at 1484.980 kb on + strand, within ABZR87_RS07025 at 1484.980 kb on + strand, within ABZR87_RS07025 at 1484.980 kb on + strand, within ABZR87_RS07025 at 1484.980 kb on + strand, within ABZR87_RS07025 at 1484.980 kb on + strand, within ABZR87_RS07025 at 1484.980 kb on + strand, within ABZR87_RS07025 at 1484.981 kb on - strand, within ABZR87_RS07025 at 1485.040 kb on - strand, within ABZR87_RS07025 at 1485.040 kb on - strand, within ABZR87_RS07025 at 1485.163 kb on + strand, within ABZR87_RS07025 at 1485.164 kb on - strand, within ABZR87_RS07025 at 1485.193 kb on - strand, within ABZR87_RS07025 at 1485.286 kb on + strand, within ABZR87_RS07025 at 1485.287 kb on - strand, within ABZR87_RS07025
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,481,555 + ABZR87_RS07015 0.20 +0.7 1,481,555 + ABZR87_RS07015 0.20 +0.7 1,481,555 + ABZR87_RS07015 0.20 -0.4 1,481,555 + ABZR87_RS07015 0.20 +1.1 1,481,556 - ABZR87_RS07015 0.20 -2.3 1,481,556 - ABZR87_RS07015 0.20 +1.8 1,481,556 - ABZR87_RS07015 0.20 +0.6 1,481,556 - ABZR87_RS07015 0.20 +1.5 1,481,556 - ABZR87_RS07015 0.20 +0.8 1,481,650 + ABZR87_RS07015 0.31 +2.1 1,481,651 - ABZR87_RS07015 0.31 -0.8 1,481,706 + ABZR87_RS07015 0.37 -0.0 1,481,730 + ABZR87_RS07015 0.40 -0.5 1,481,953 + ABZR87_RS07015 0.65 +1.5 1,481,953 + ABZR87_RS07015 0.65 -0.6 1,481,953 + ABZR87_RS07015 0.65 -0.2 1,481,953 + ABZR87_RS07015 0.65 -0.2 1,481,953 + ABZR87_RS07015 0.65 +0.0 1,481,953 + ABZR87_RS07015 0.65 +0.0 1,481,953 + ABZR87_RS07015 0.65 +0.2 1,481,953 + ABZR87_RS07015 0.65 -0.1 1,481,953 + ABZR87_RS07015 0.65 -1.9 1,481,954 - ABZR87_RS07015 0.65 +0.5 1,481,954 - ABZR87_RS07015 0.65 -0.0 1,481,954 - ABZR87_RS07015 0.65 -0.8 1,481,954 - ABZR87_RS07015 0.65 +0.2 1,481,954 - ABZR87_RS07015 0.65 -0.3 1,481,954 - ABZR87_RS07015 0.65 -0.0 1,481,955 + ABZR87_RS07015 0.66 -2.6 1,481,957 + ABZR87_RS07015 0.66 +1.2 1,481,957 + ABZR87_RS07015 0.66 -0.5 1,481,957 + ABZR87_RS07015 0.66 +0.0 1,481,957 + ABZR87_RS07015 0.66 +1.4 1,481,957 + ABZR87_RS07015 0.66 -0.2 1,481,957 + ABZR87_RS07015 0.66 +0.0 1,481,957 + ABZR87_RS07015 0.66 +0.9 1,481,958 - ABZR87_RS07015 0.66 -1.1 1,481,958 - ABZR87_RS07015 0.66 -0.7 1,481,958 - ABZR87_RS07015 0.66 +0.2 1,481,958 - ABZR87_RS07015 0.66 -2.4 1,481,958 - ABZR87_RS07015 0.66 +1.4 1,481,958 - ABZR87_RS07015 0.66 +0.9 1,481,958 - ABZR87_RS07015 0.66 -1.5 1,481,958 - ABZR87_RS07015 0.66 +0.4 1,482,029 + ABZR87_RS07015 0.74 -1.1 1,482,131 + ABZR87_RS07015 0.86 -0.4 1,482,132 - ABZR87_RS07015 0.86 +0.8 1,482,132 - ABZR87_RS07015 0.86 +1.4 1,482,155 + ABZR87_RS07015 0.88 -0.6 1,482,156 - ABZR87_RS07015 0.88 -0.6 1,482,233 + +0.5 1,482,233 + -1.6 1,482,233 + -2.1 1,482,234 - +1.1 1,482,234 - -0.5 1,482,310 + +1.5 1,482,310 + +0.2 1,482,310 + -1.5 1,482,311 - +0.3 1,482,311 - -0.9 1,482,432 + +0.4 1,482,433 - +5.0 1,482,433 - +1.6 1,482,433 - +3.8 1,482,444 + +1.3 1,482,444 + -0.8 1,482,445 - +2.1 1,482,467 + +0.3 1,482,467 + +0.9 1,482,468 - +4.6 1,482,468 - +3.0 1,482,478 + +1.2 1,482,536 + -1.0 1,482,537 - +3.9 1,482,537 - +6.7 1,482,537 - +3.7 1,482,537 - +7.0 1,482,537 - +5.1 1,482,581 + +2.1 1,482,581 + +6.9 1,482,581 + +6.8 1,482,581 + +6.3 1,482,582 - +6.7 1,482,582 - +6.9 1,482,604 - +8.0 1,482,653 + +5.8 1,482,653 + +5.0 1,482,654 - +6.4 1,482,654 - +7.0 1,482,654 - +6.2 1,482,654 - +6.8 1,482,848 + ABZR87_RS07020 0.15 +5.9 1,482,848 + ABZR87_RS07020 0.15 +7.0 1,482,848 + ABZR87_RS07020 0.15 +7.2 1,482,849 - ABZR87_RS07020 0.15 +6.6 1,482,849 - ABZR87_RS07020 0.15 +7.1 1,482,849 - ABZR87_RS07020 0.15 +6.1 1,482,849 - ABZR87_RS07020 0.15 +5.9 1,482,861 - ABZR87_RS07020 0.16 +7.3 1,482,861 - ABZR87_RS07020 0.16 +8.0 1,483,055 + ABZR87_RS07020 0.26 +6.8 1,483,055 + ABZR87_RS07020 0.26 +7.7 1,483,055 + ABZR87_RS07020 0.26 +6.8 1,483,056 - ABZR87_RS07020 0.26 +5.8 1,483,056 - ABZR87_RS07020 0.26 +8.0 1,483,056 - ABZR87_RS07020 0.26 +6.3 1,483,056 - ABZR87_RS07020 0.26 +4.9 1,483,056 - ABZR87_RS07020 0.26 +5.8 1,483,058 - ABZR87_RS07020 0.26 +5.9 1,483,843 + ABZR87_RS07020 0.67 +6.7 1,483,843 + ABZR87_RS07020 0.67 +6.3 1,483,844 - ABZR87_RS07020 0.67 +6.6 1,483,844 - ABZR87_RS07020 0.67 +7.2 1,483,844 - ABZR87_RS07020 0.67 +6.5 1,483,844 - ABZR87_RS07020 0.67 +7.8 1,483,844 - ABZR87_RS07020 0.67 +5.2 1,484,024 + ABZR87_RS07020 0.76 +7.0 1,484,024 + ABZR87_RS07020 0.76 +6.9 1,484,024 + ABZR87_RS07020 0.76 +6.9 1,484,024 + ABZR87_RS07020 0.76 +6.1 1,484,024 + ABZR87_RS07020 0.76 +7.4 1,484,025 - ABZR87_RS07020 0.76 +6.4 1,484,025 - ABZR87_RS07020 0.76 +6.0 1,484,025 - ABZR87_RS07020 0.76 +6.5 1,484,025 - ABZR87_RS07020 0.76 +7.5 1,484,025 - ABZR87_RS07020 0.76 +6.2 1,484,025 - ABZR87_RS07020 0.76 +8.2 1,484,025 - ABZR87_RS07020 0.76 +6.3 1,484,025 - ABZR87_RS07020 0.76 +5.4 1,484,090 + ABZR87_RS07020 0.79 +4.8 1,484,091 - ABZR87_RS07020 0.79 +7.2 1,484,357 - +8.2 1,484,432 + +0.4 1,484,432 + -0.8 1,484,432 + +1.4 1,484,432 + +1.3 1,484,432 + +0.5 1,484,433 - -0.4 1,484,433 - +1.4 1,484,433 - +0.8 1,484,544 + +1.5 1,484,544 + -1.9 1,484,544 + +1.0 1,484,545 - -1.1 1,484,645 - -0.2 1,484,645 - -1.5 1,484,802 + ABZR87_RS07025 0.18 +0.8 1,484,803 - ABZR87_RS07025 0.18 +2.2 1,484,805 + ABZR87_RS07025 0.18 -0.5 1,484,805 + ABZR87_RS07025 0.18 -0.5 1,484,805 + ABZR87_RS07025 0.18 -0.3 1,484,805 + ABZR87_RS07025 0.18 -0.8 1,484,805 + ABZR87_RS07025 0.18 -0.6 1,484,805 + ABZR87_RS07025 0.18 -0.0 1,484,806 - ABZR87_RS07025 0.18 +1.1 1,484,806 - ABZR87_RS07025 0.18 +1.4 1,484,895 + ABZR87_RS07025 0.26 +0.9 1,484,898 + ABZR87_RS07025 0.26 -1.0 1,484,899 - ABZR87_RS07025 0.26 +1.0 1,484,899 - ABZR87_RS07025 0.26 -0.5 1,484,899 - ABZR87_RS07025 0.26 -0.3 1,484,899 - ABZR87_RS07025 0.26 -1.1 1,484,899 - ABZR87_RS07025 0.26 -1.4 1,484,899 - ABZR87_RS07025 0.26 -0.8 1,484,899 - ABZR87_RS07025 0.26 +2.1 1,484,980 + ABZR87_RS07025 0.34 +0.7 1,484,980 + ABZR87_RS07025 0.34 +0.9 1,484,980 + ABZR87_RS07025 0.34 -0.7 1,484,980 + ABZR87_RS07025 0.34 +1.1 1,484,980 + ABZR87_RS07025 0.34 -1.7 1,484,980 + ABZR87_RS07025 0.34 -0.1 1,484,981 - ABZR87_RS07025 0.34 +2.7 1,485,040 - ABZR87_RS07025 0.39 +0.1 1,485,040 - ABZR87_RS07025 0.39 -0.7 1,485,163 + ABZR87_RS07025 0.49 +1.9 1,485,164 - ABZR87_RS07025 0.50 +1.4 1,485,193 - ABZR87_RS07025 0.52 +0.6 1,485,286 + ABZR87_RS07025 0.60 +1.7 1,485,287 - ABZR87_RS07025 0.60 -0.4
Or see this region's nucleotide sequence