Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06060

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06050 and ABZR87_RS06055 are separated by 12 nucleotidesABZR87_RS06055 and ABZR87_RS06060 are separated by 10 nucleotidesABZR87_RS06060 and ABZR87_RS06065 are separated by 1 nucleotidesABZR87_RS06065 and ABZR87_RS06070 are separated by 2 nucleotides ABZR87_RS06050: ABZR87_RS06050 - fused isobutyryl-CoA mutase/GTPase IcmF, at 1,290,293 to 1,293,580 _RS06050 ABZR87_RS06055: ABZR87_RS06055 - aspartate/glutamate racemase family protein, at 1,293,593 to 1,294,315 _RS06055 ABZR87_RS06060: ABZR87_RS06060 - ABC transporter permease, at 1,294,326 to 1,295,222 _RS06060 ABZR87_RS06065: ABZR87_RS06065 - ABC transporter permease, at 1,295,224 to 1,296,177 _RS06065 ABZR87_RS06070: ABZR87_RS06070 - extracellular solute-binding protein, at 1,296,180 to 1,297,445 _RS06070 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -2 -1 0 1 2at 1293.578 kb on + strandat 1293.578 kb on + strandat 1293.578 kb on + strandat 1293.578 kb on + strandat 1293.579 kb on - strandat 1293.579 kb on - strandat 1293.579 kb on - strandat 1293.579 kb on - strandat 1293.837 kb on + strand, within ABZR87_RS06055at 1293.837 kb on + strand, within ABZR87_RS06055at 1293.837 kb on + strand, within ABZR87_RS06055at 1293.838 kb on - strand, within ABZR87_RS06055at 1293.838 kb on - strand, within ABZR87_RS06055at 1293.866 kb on - strand, within ABZR87_RS06055at 1293.966 kb on + strand, within ABZR87_RS06055at 1293.966 kb on + strand, within ABZR87_RS06055at 1293.966 kb on + strand, within ABZR87_RS06055at 1294.158 kb on + strand, within ABZR87_RS06055at 1294.158 kb on + strand, within ABZR87_RS06055at 1294.159 kb on - strand, within ABZR87_RS06055at 1294.159 kb on - strand, within ABZR87_RS06055at 1294.891 kb on + strand, within ABZR87_RS06060at 1294.891 kb on + strand, within ABZR87_RS06060at 1294.891 kb on + strand, within ABZR87_RS06060at 1294.891 kb on + strand, within ABZR87_RS06060at 1294.891 kb on + strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1294.892 kb on - strand, within ABZR87_RS06060at 1295.141 kb on - strandat 1295.541 kb on + strand, within ABZR87_RS06065at 1295.542 kb on - strand, within ABZR87_RS06065at 1295.585 kb on + strand, within ABZR87_RS06065at 1295.585 kb on + strand, within ABZR87_RS06065at 1295.585 kb on + strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.586 kb on - strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.597 kb on + strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.598 kb on - strand, within ABZR87_RS06065at 1295.624 kb on + strand, within ABZR87_RS06065at 1295.624 kb on + strand, within ABZR87_RS06065at 1295.624 kb on + strand, within ABZR87_RS06065at 1295.882 kb on + strand, within ABZR87_RS06065at 1295.882 kb on + strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.883 kb on - strand, within ABZR87_RS06065at 1295.913 kb on - strand, within ABZR87_RS06065at 1295.951 kb on + strand, within ABZR87_RS06065at 1295.951 kb on + strand, within ABZR87_RS06065at 1295.951 kb on + strand, within ABZR87_RS06065at 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.217 kb on + strandat 1296.218 kb on - strandat 1296.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,293,578 + -2.0
1,293,578 + -0.8
1,293,578 + -0.6
1,293,578 + -1.0
1,293,579 - +0.4
1,293,579 - -1.4
1,293,579 - -0.3
1,293,579 - -1.8
1,293,837 + ABZR87_RS06055 0.34 -1.2
1,293,837 + ABZR87_RS06055 0.34 -0.7
1,293,837 + ABZR87_RS06055 0.34 +0.1
1,293,838 - ABZR87_RS06055 0.34 -1.8
1,293,838 - ABZR87_RS06055 0.34 +0.1
1,293,866 - ABZR87_RS06055 0.38 -0.3
1,293,966 + ABZR87_RS06055 0.52 -1.1
1,293,966 + ABZR87_RS06055 0.52 -0.3
1,293,966 + ABZR87_RS06055 0.52 +0.7
1,294,158 + ABZR87_RS06055 0.78 -1.1
1,294,158 + ABZR87_RS06055 0.78 +0.4
1,294,159 - ABZR87_RS06055 0.78 -0.0
1,294,159 - ABZR87_RS06055 0.78 -0.1
1,294,891 + ABZR87_RS06060 0.63 +1.5
1,294,891 + ABZR87_RS06060 0.63 -2.3
1,294,891 + ABZR87_RS06060 0.63 -1.2
1,294,891 + ABZR87_RS06060 0.63 -1.0
1,294,891 + ABZR87_RS06060 0.63 -1.6
1,294,892 - ABZR87_RS06060 0.63 -0.1
1,294,892 - ABZR87_RS06060 0.63 -1.2
1,294,892 - ABZR87_RS06060 0.63 -1.3
1,294,892 - ABZR87_RS06060 0.63 +1.3
1,294,892 - ABZR87_RS06060 0.63 -0.6
1,294,892 - ABZR87_RS06060 0.63 -1.7
1,294,892 - ABZR87_RS06060 0.63 -1.4
1,295,141 - -0.4
1,295,541 + ABZR87_RS06065 0.33 -1.7
1,295,542 - ABZR87_RS06065 0.33 +1.7
1,295,585 + ABZR87_RS06065 0.38 -1.3
1,295,585 + ABZR87_RS06065 0.38 -0.4
1,295,585 + ABZR87_RS06065 0.38 +0.9
1,295,586 - ABZR87_RS06065 0.38 -1.7
1,295,586 - ABZR87_RS06065 0.38 -0.8
1,295,586 - ABZR87_RS06065 0.38 +0.9
1,295,586 - ABZR87_RS06065 0.38 -0.0
1,295,586 - ABZR87_RS06065 0.38 +0.1
1,295,586 - ABZR87_RS06065 0.38 -0.7
1,295,597 + ABZR87_RS06065 0.39 -1.4
1,295,597 + ABZR87_RS06065 0.39 -0.4
1,295,597 + ABZR87_RS06065 0.39 -0.1
1,295,597 + ABZR87_RS06065 0.39 +1.8
1,295,597 + ABZR87_RS06065 0.39 -0.7
1,295,597 + ABZR87_RS06065 0.39 +1.1
1,295,597 + ABZR87_RS06065 0.39 +1.4
1,295,597 + ABZR87_RS06065 0.39 +0.2
1,295,597 + ABZR87_RS06065 0.39 +1.6
1,295,598 - ABZR87_RS06065 0.39 +1.9
1,295,598 - ABZR87_RS06065 0.39 +0.4
1,295,598 - ABZR87_RS06065 0.39 -0.7
1,295,598 - ABZR87_RS06065 0.39 +0.8
1,295,624 + ABZR87_RS06065 0.42 -1.3
1,295,624 + ABZR87_RS06065 0.42 +0.7
1,295,624 + ABZR87_RS06065 0.42 -1.8
1,295,882 + ABZR87_RS06065 0.69 -1.8
1,295,882 + ABZR87_RS06065 0.69 +1.1
1,295,883 - ABZR87_RS06065 0.69 +0.5
1,295,883 - ABZR87_RS06065 0.69 -0.8
1,295,883 - ABZR87_RS06065 0.69 -0.6
1,295,883 - ABZR87_RS06065 0.69 +0.0
1,295,883 - ABZR87_RS06065 0.69 +1.5
1,295,913 - ABZR87_RS06065 0.72 -0.7
1,295,951 + ABZR87_RS06065 0.76 -0.2
1,295,951 + ABZR87_RS06065 0.76 -0.1
1,295,951 + ABZR87_RS06065 0.76 -0.0
1,296,217 + +0.6
1,296,217 + -2.5
1,296,217 + -0.3
1,296,217 + +0.3
1,296,217 + -0.6
1,296,217 + -1.3
1,296,218 - -0.7
1,296,218 - +0.8

Or see this region's nucleotide sequence