Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05990

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05985 and ABZR87_RS05990 are separated by 20 nucleotidesABZR87_RS05990 and ABZR87_RS05995 overlap by 1 nucleotidesABZR87_RS05995 and ABZR87_RS06000 overlap by 4 nucleotides ABZR87_RS05985: ABZR87_RS05985 - PLP-dependent aminotransferase family protein, at 1,277,723 to 1,278,931 _RS05985 ABZR87_RS05990: ABZR87_RS05990 - AraC family transcriptional regulator, at 1,278,952 to 1,279,458 _RS05990 ABZR87_RS05995: ABZR87_RS05995 - VOC family protein, at 1,279,458 to 1,279,874 _RS05995 ABZR87_RS06000: ABZR87_RS06000 - hypothetical protein, at 1,279,871 to 1,280,146 _RS06000 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1278.134 kb on + strand, within ABZR87_RS05985at 1278.135 kb on - strand, within ABZR87_RS05985at 1278.135 kb on - strand, within ABZR87_RS05985at 1278.230 kb on + strand, within ABZR87_RS05985at 1278.230 kb on + strand, within ABZR87_RS05985at 1278.231 kb on - strand, within ABZR87_RS05985at 1278.303 kb on + strand, within ABZR87_RS05985at 1278.303 kb on + strand, within ABZR87_RS05985at 1278.303 kb on + strand, within ABZR87_RS05985at 1278.304 kb on - strand, within ABZR87_RS05985at 1278.304 kb on - strand, within ABZR87_RS05985at 1278.356 kb on + strand, within ABZR87_RS05985at 1278.357 kb on - strand, within ABZR87_RS05985at 1278.357 kb on - strand, within ABZR87_RS05985at 1278.386 kb on + strand, within ABZR87_RS05985at 1278.386 kb on + strand, within ABZR87_RS05985at 1278.387 kb on - strand, within ABZR87_RS05985at 1278.431 kb on + strand, within ABZR87_RS05985at 1278.431 kb on + strand, within ABZR87_RS05985at 1278.431 kb on + strand, within ABZR87_RS05985at 1278.432 kb on - strand, within ABZR87_RS05985at 1278.432 kb on - strand, within ABZR87_RS05985at 1278.578 kb on + strand, within ABZR87_RS05985at 1278.578 kb on + strand, within ABZR87_RS05985at 1278.579 kb on - strand, within ABZR87_RS05985at 1278.629 kb on + strand, within ABZR87_RS05985at 1278.629 kb on + strand, within ABZR87_RS05985at 1278.630 kb on - strand, within ABZR87_RS05985at 1278.813 kb on - strandat 1278.851 kb on + strandat 1279.141 kb on + strand, within ABZR87_RS05990at 1279.142 kb on - strand, within ABZR87_RS05990at 1279.217 kb on - strand, within ABZR87_RS05990at 1279.422 kb on + strandat 1279.423 kb on - strandat 1279.423 kb on - strandat 1279.488 kb on + strandat 1279.488 kb on + strandat 1279.488 kb on + strandat 1279.488 kb on + strandat 1279.488 kb on + strandat 1279.488 kb on + strandat 1279.489 kb on - strandat 1279.489 kb on - strandat 1279.489 kb on - strandat 1279.489 kb on - strandat 1279.489 kb on - strandat 1279.489 kb on - strandat 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.521 kb on + strand, within ABZR87_RS05995at 1279.522 kb on - strand, within ABZR87_RS05995at 1279.522 kb on - strand, within ABZR87_RS05995at 1279.522 kb on - strand, within ABZR87_RS05995at 1279.997 kb on + strand, within ABZR87_RS06000at 1279.998 kb on - strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.042 kb on + strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.043 kb on - strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.044 kb on + strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000at 1280.045 kb on - strand, within ABZR87_RS06000

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,278,134 + ABZR87_RS05985 0.34 -1.1
1,278,135 - ABZR87_RS05985 0.34 -2.1
1,278,135 - ABZR87_RS05985 0.34 +1.1
1,278,230 + ABZR87_RS05985 0.42 -1.2
1,278,230 + ABZR87_RS05985 0.42 -0.4
1,278,231 - ABZR87_RS05985 0.42 -0.3
1,278,303 + ABZR87_RS05985 0.48 +0.1
1,278,303 + ABZR87_RS05985 0.48 +0.7
1,278,303 + ABZR87_RS05985 0.48 -0.2
1,278,304 - ABZR87_RS05985 0.48 -1.8
1,278,304 - ABZR87_RS05985 0.48 +0.6
1,278,356 + ABZR87_RS05985 0.52 -0.3
1,278,357 - ABZR87_RS05985 0.52 -0.6
1,278,357 - ABZR87_RS05985 0.52 -0.5
1,278,386 + ABZR87_RS05985 0.55 +0.1
1,278,386 + ABZR87_RS05985 0.55 +1.0
1,278,387 - ABZR87_RS05985 0.55 -1.4
1,278,431 + ABZR87_RS05985 0.59 -0.9
1,278,431 + ABZR87_RS05985 0.59 +0.1
1,278,431 + ABZR87_RS05985 0.59 -0.9
1,278,432 - ABZR87_RS05985 0.59 -2.7
1,278,432 - ABZR87_RS05985 0.59 +2.0
1,278,578 + ABZR87_RS05985 0.71 +0.4
1,278,578 + ABZR87_RS05985 0.71 -0.2
1,278,579 - ABZR87_RS05985 0.71 +0.4
1,278,629 + ABZR87_RS05985 0.75 -0.0
1,278,629 + ABZR87_RS05985 0.75 +1.5
1,278,630 - ABZR87_RS05985 0.75 +3.5
1,278,813 - +0.2
1,278,851 + +1.1
1,279,141 + ABZR87_RS05990 0.37 -3.4
1,279,142 - ABZR87_RS05990 0.37 -2.5
1,279,217 - ABZR87_RS05990 0.52 -0.1
1,279,422 + -1.8
1,279,423 - -0.5
1,279,423 - -0.9
1,279,488 + +1.1
1,279,488 + +1.0
1,279,488 + -0.4
1,279,488 + +0.8
1,279,488 + +0.8
1,279,488 + +0.6
1,279,489 - +0.3
1,279,489 - -1.2
1,279,489 - +2.1
1,279,489 - +0.4
1,279,489 - -1.0
1,279,489 - -0.0
1,279,521 + ABZR87_RS05995 0.15 +2.0
1,279,521 + ABZR87_RS05995 0.15 +1.7
1,279,521 + ABZR87_RS05995 0.15 +0.0
1,279,521 + ABZR87_RS05995 0.15 +0.2
1,279,521 + ABZR87_RS05995 0.15 +0.5
1,279,522 - ABZR87_RS05995 0.15 -1.3
1,279,522 - ABZR87_RS05995 0.15 -0.2
1,279,522 - ABZR87_RS05995 0.15 -0.1
1,279,997 + ABZR87_RS06000 0.46 +0.1
1,279,998 - ABZR87_RS06000 0.46 +1.9
1,280,042 + ABZR87_RS06000 0.62 -0.2
1,280,042 + ABZR87_RS06000 0.62 -1.3
1,280,042 + ABZR87_RS06000 0.62 +0.4
1,280,042 + ABZR87_RS06000 0.62 +1.3
1,280,042 + ABZR87_RS06000 0.62 -0.9
1,280,042 + ABZR87_RS06000 0.62 +1.2
1,280,042 + ABZR87_RS06000 0.62 +0.2
1,280,042 + ABZR87_RS06000 0.62 -0.6
1,280,042 + ABZR87_RS06000 0.62 +1.9
1,280,042 + ABZR87_RS06000 0.62 -0.5
1,280,042 + ABZR87_RS06000 0.62 -1.5
1,280,042 + ABZR87_RS06000 0.62 -0.2
1,280,042 + ABZR87_RS06000 0.62 -0.1
1,280,042 + ABZR87_RS06000 0.62 -0.8
1,280,042 + ABZR87_RS06000 0.62 -1.8
1,280,043 - ABZR87_RS06000 0.62 +0.2
1,280,043 - ABZR87_RS06000 0.62 -1.2
1,280,043 - ABZR87_RS06000 0.62 +0.2
1,280,043 - ABZR87_RS06000 0.62 +0.8
1,280,043 - ABZR87_RS06000 0.62 -0.7
1,280,043 - ABZR87_RS06000 0.62 -0.9
1,280,043 - ABZR87_RS06000 0.62 -0.6
1,280,043 - ABZR87_RS06000 0.62 -0.3
1,280,043 - ABZR87_RS06000 0.62 -0.6
1,280,043 - ABZR87_RS06000 0.62 +1.1
1,280,043 - ABZR87_RS06000 0.62 -0.6
1,280,044 + ABZR87_RS06000 0.63 -0.3
1,280,044 + ABZR87_RS06000 0.63 -1.8
1,280,044 + ABZR87_RS06000 0.63 -0.7
1,280,044 + ABZR87_RS06000 0.63 -1.6
1,280,044 + ABZR87_RS06000 0.63 -0.6
1,280,044 + ABZR87_RS06000 0.63 +1.2
1,280,044 + ABZR87_RS06000 0.63 -0.7
1,280,044 + ABZR87_RS06000 0.63 -0.5
1,280,044 + ABZR87_RS06000 0.63 -0.0
1,280,044 + ABZR87_RS06000 0.63 -0.1
1,280,044 + ABZR87_RS06000 0.63 +0.6
1,280,044 + ABZR87_RS06000 0.63 +1.1
1,280,045 - ABZR87_RS06000 0.63 -0.9
1,280,045 - ABZR87_RS06000 0.63 -0.2
1,280,045 - ABZR87_RS06000 0.63 +0.2
1,280,045 - ABZR87_RS06000 0.63 -1.1
1,280,045 - ABZR87_RS06000 0.63 -0.5
1,280,045 - ABZR87_RS06000 0.63 -2.2
1,280,045 - ABZR87_RS06000 0.63 +0.7
1,280,045 - ABZR87_RS06000 0.63 -0.7
1,280,045 - ABZR87_RS06000 0.63 +0.2

Or see this region's nucleotide sequence