Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05695

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05690 and ABZR87_RS05695 are separated by 287 nucleotidesABZR87_RS05695 and ABZR87_RS05700 are separated by 166 nucleotides ABZR87_RS05690: ABZR87_RS05690 - efflux transporter outer membrane subunit, at 1,207,905 to 1,209,644 _RS05690 ABZR87_RS05695: ABZR87_RS05695 - 2-dehydropantoate 2-reductase, at 1,209,932 to 1,210,888 _RS05695 ABZR87_RS05700: ABZR87_RS05700 - tRNA 2-thiocytidine(32) synthetase TtcA, at 1,211,055 to 1,212,002 _RS05700 Position (kb) 1209 1210 1211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1208.987 kb on - strand, within ABZR87_RS05690at 1209.339 kb on + strand, within ABZR87_RS05690at 1209.339 kb on + strand, within ABZR87_RS05690at 1209.339 kb on + strand, within ABZR87_RS05690at 1209.339 kb on + strand, within ABZR87_RS05690at 1209.340 kb on - strand, within ABZR87_RS05690at 1209.360 kb on + strand, within ABZR87_RS05690at 1209.361 kb on - strand, within ABZR87_RS05690at 1209.361 kb on - strand, within ABZR87_RS05690at 1209.373 kb on + strand, within ABZR87_RS05690at 1209.374 kb on - strand, within ABZR87_RS05690at 1209.374 kb on - strand, within ABZR87_RS05690at 1209.436 kb on + strand, within ABZR87_RS05690at 1209.437 kb on - strand, within ABZR87_RS05690at 1209.437 kb on - strand, within ABZR87_RS05690at 1209.524 kb on - strandat 1209.598 kb on + strandat 1209.598 kb on + strandat 1209.598 kb on + strandat 1209.598 kb on + strandat 1209.598 kb on + strandat 1209.599 kb on - strandat 1209.599 kb on - strandat 1209.626 kb on - strandat 1209.642 kb on + strandat 1209.642 kb on + strandat 1209.643 kb on - strandat 1209.643 kb on - strandat 1209.700 kb on + strandat 1209.709 kb on + strandat 1209.710 kb on - strandat 1209.710 kb on - strandat 1209.710 kb on - strandat 1209.966 kb on + strandat 1209.966 kb on + strandat 1209.967 kb on - strandat 1209.967 kb on - strandat 1209.967 kb on - strandat 1209.967 kb on - strandat 1210.592 kb on + strand, within ABZR87_RS05695at 1210.592 kb on + strand, within ABZR87_RS05695at 1210.593 kb on - strand, within ABZR87_RS05695at 1210.593 kb on - strand, within ABZR87_RS05695at 1210.593 kb on - strand, within ABZR87_RS05695at 1210.848 kb on + strandat 1210.927 kb on + strandat 1210.927 kb on + strandat 1210.928 kb on - strandat 1210.928 kb on - strandat 1210.941 kb on + strandat 1210.941 kb on + strandat 1210.941 kb on + strandat 1210.942 kb on - strandat 1210.942 kb on - strandat 1210.942 kb on - strandat 1210.985 kb on - strandat 1211.027 kb on + strandat 1211.027 kb on + strandat 1211.028 kb on - strandat 1211.028 kb on - strandat 1211.050 kb on - strandat 1211.070 kb on - strandat 1211.187 kb on + strand, within ABZR87_RS05700at 1211.187 kb on + strand, within ABZR87_RS05700at 1211.187 kb on + strand, within ABZR87_RS05700at 1211.188 kb on - strand, within ABZR87_RS05700at 1211.188 kb on - strand, within ABZR87_RS05700at 1211.188 kb on - strand, within ABZR87_RS05700at 1211.305 kb on - strand, within ABZR87_RS05700at 1211.305 kb on - strand, within ABZR87_RS05700at 1211.305 kb on - strand, within ABZR87_RS05700at 1211.305 kb on - strand, within ABZR87_RS05700at 1211.305 kb on - strand, within ABZR87_RS05700at 1211.305 kb on - strand, within ABZR87_RS05700at 1211.328 kb on + strand, within ABZR87_RS05700at 1211.328 kb on + strand, within ABZR87_RS05700at 1211.328 kb on + strand, within ABZR87_RS05700at 1211.328 kb on + strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.329 kb on - strand, within ABZR87_RS05700at 1211.331 kb on - strand, within ABZR87_RS05700at 1211.352 kb on + strand, within ABZR87_RS05700at 1211.352 kb on + strand, within ABZR87_RS05700at 1211.352 kb on + strand, within ABZR87_RS05700at 1211.353 kb on - strand, within ABZR87_RS05700at 1211.353 kb on - strand, within ABZR87_RS05700at 1211.353 kb on - strand, within ABZR87_RS05700at 1211.353 kb on - strand, within ABZR87_RS05700at 1211.353 kb on - strand, within ABZR87_RS05700at 1211.430 kb on + strand, within ABZR87_RS05700at 1211.430 kb on + strand, within ABZR87_RS05700at 1211.430 kb on + strand, within ABZR87_RS05700at 1211.431 kb on - strand, within ABZR87_RS05700at 1211.598 kb on + strand, within ABZR87_RS05700at 1211.625 kb on + strand, within ABZR87_RS05700at 1211.625 kb on + strand, within ABZR87_RS05700at 1211.625 kb on + strand, within ABZR87_RS05700at 1211.625 kb on + strand, within ABZR87_RS05700at 1211.626 kb on - strand, within ABZR87_RS05700at 1211.626 kb on - strand, within ABZR87_RS05700at 1211.626 kb on - strand, within ABZR87_RS05700at 1211.626 kb on - strand, within ABZR87_RS05700at 1211.877 kb on + strand, within ABZR87_RS05700at 1211.877 kb on + strand, within ABZR87_RS05700at 1211.877 kb on + strand, within ABZR87_RS05700at 1211.878 kb on - strand, within ABZR87_RS05700

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,208,987 - ABZR87_RS05690 0.62 +0.6
1,209,339 + ABZR87_RS05690 0.82 -0.6
1,209,339 + ABZR87_RS05690 0.82 -2.2
1,209,339 + ABZR87_RS05690 0.82 -1.5
1,209,339 + ABZR87_RS05690 0.82 +1.5
1,209,340 - ABZR87_RS05690 0.82 -1.3
1,209,360 + ABZR87_RS05690 0.84 +1.1
1,209,361 - ABZR87_RS05690 0.84 -0.8
1,209,361 - ABZR87_RS05690 0.84 -0.5
1,209,373 + ABZR87_RS05690 0.84 +1.6
1,209,374 - ABZR87_RS05690 0.84 -2.5
1,209,374 - ABZR87_RS05690 0.84 +0.4
1,209,436 + ABZR87_RS05690 0.88 -0.0
1,209,437 - ABZR87_RS05690 0.88 +0.4
1,209,437 - ABZR87_RS05690 0.88 -1.0
1,209,524 - -0.9
1,209,598 + -1.4
1,209,598 + -1.4
1,209,598 + +0.9
1,209,598 + -0.1
1,209,598 + -0.9
1,209,599 - +0.9
1,209,599 - -1.2
1,209,626 - -2.5
1,209,642 + +1.0
1,209,642 + -1.1
1,209,643 - +0.6
1,209,643 - -1.8
1,209,700 + +0.8
1,209,709 + -1.1
1,209,710 - -0.7
1,209,710 - -0.6
1,209,710 - -0.6
1,209,966 + -2.0
1,209,966 + -0.7
1,209,967 - +0.6
1,209,967 - -0.5
1,209,967 - +0.3
1,209,967 - -0.7
1,210,592 + ABZR87_RS05695 0.69 -1.1
1,210,592 + ABZR87_RS05695 0.69 -0.5
1,210,593 - ABZR87_RS05695 0.69 -1.7
1,210,593 - ABZR87_RS05695 0.69 -1.0
1,210,593 - ABZR87_RS05695 0.69 -0.4
1,210,848 + +1.0
1,210,927 + -0.7
1,210,927 + -0.8
1,210,928 - -2.3
1,210,928 - +0.6
1,210,941 + -1.0
1,210,941 + +1.4
1,210,941 + -1.6
1,210,942 - -0.3
1,210,942 - -1.1
1,210,942 - +1.1
1,210,985 - +0.7
1,211,027 + +0.9
1,211,027 + +0.2
1,211,028 - +1.2
1,211,028 - -0.7
1,211,050 - -0.3
1,211,070 - -0.3
1,211,187 + ABZR87_RS05700 0.14 +0.2
1,211,187 + ABZR87_RS05700 0.14 -0.8
1,211,187 + ABZR87_RS05700 0.14 -0.1
1,211,188 - ABZR87_RS05700 0.14 -1.3
1,211,188 - ABZR87_RS05700 0.14 +0.8
1,211,188 - ABZR87_RS05700 0.14 -0.5
1,211,305 - ABZR87_RS05700 0.26 +1.6
1,211,305 - ABZR87_RS05700 0.26 +0.1
1,211,305 - ABZR87_RS05700 0.26 +0.4
1,211,305 - ABZR87_RS05700 0.26 -1.0
1,211,305 - ABZR87_RS05700 0.26 -0.3
1,211,305 - ABZR87_RS05700 0.26 +0.3
1,211,328 + ABZR87_RS05700 0.29 -0.2
1,211,328 + ABZR87_RS05700 0.29 -0.3
1,211,328 + ABZR87_RS05700 0.29 +0.6
1,211,328 + ABZR87_RS05700 0.29 +0.8
1,211,329 - ABZR87_RS05700 0.29 +1.3
1,211,329 - ABZR87_RS05700 0.29 -0.6
1,211,329 - ABZR87_RS05700 0.29 +0.5
1,211,329 - ABZR87_RS05700 0.29 -1.1
1,211,329 - ABZR87_RS05700 0.29 +0.1
1,211,329 - ABZR87_RS05700 0.29 +0.3
1,211,329 - ABZR87_RS05700 0.29 +1.0
1,211,329 - ABZR87_RS05700 0.29 +0.7
1,211,331 - ABZR87_RS05700 0.29 +0.1
1,211,352 + ABZR87_RS05700 0.31 -0.8
1,211,352 + ABZR87_RS05700 0.31 +0.1
1,211,352 + ABZR87_RS05700 0.31 +0.7
1,211,353 - ABZR87_RS05700 0.31 +0.5
1,211,353 - ABZR87_RS05700 0.31 -0.9
1,211,353 - ABZR87_RS05700 0.31 +1.8
1,211,353 - ABZR87_RS05700 0.31 +0.1
1,211,353 - ABZR87_RS05700 0.31 +0.9
1,211,430 + ABZR87_RS05700 0.40 -0.6
1,211,430 + ABZR87_RS05700 0.40 -0.6
1,211,430 + ABZR87_RS05700 0.40 -2.0
1,211,431 - ABZR87_RS05700 0.40 -0.8
1,211,598 + ABZR87_RS05700 0.57 -1.6
1,211,625 + ABZR87_RS05700 0.60 -3.0
1,211,625 + ABZR87_RS05700 0.60 +1.1
1,211,625 + ABZR87_RS05700 0.60 -2.0
1,211,625 + ABZR87_RS05700 0.60 +0.2
1,211,626 - ABZR87_RS05700 0.60 +0.5
1,211,626 - ABZR87_RS05700 0.60 -1.5
1,211,626 - ABZR87_RS05700 0.60 -0.6
1,211,626 - ABZR87_RS05700 0.60 +0.6
1,211,877 + ABZR87_RS05700 0.87 +0.5
1,211,877 + ABZR87_RS05700 0.87 +0.4
1,211,877 + ABZR87_RS05700 0.87 -0.3
1,211,878 - ABZR87_RS05700 0.87 -0.9

Or see this region's nucleotide sequence