Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS05690 and ABZR87_RS05695 are separated by 287 nucleotides ABZR87_RS05695 and ABZR87_RS05700 are separated by 166 nucleotides
ABZR87_RS05690: ABZR87_RS05690 - efflux transporter outer membrane subunit, at 1,207,905 to 1,209,644
_RS05690
ABZR87_RS05695: ABZR87_RS05695 - 2-dehydropantoate 2-reductase, at 1,209,932 to 1,210,888
_RS05695
ABZR87_RS05700: ABZR87_RS05700 - tRNA 2-thiocytidine(32) synthetase TtcA, at 1,211,055 to 1,212,002
_RS05700
Position (kb)
1209
1210
1211 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1208.987 kb on - strand, within ABZR87_RS05690 at 1209.339 kb on + strand, within ABZR87_RS05690 at 1209.339 kb on + strand, within ABZR87_RS05690 at 1209.339 kb on + strand, within ABZR87_RS05690 at 1209.339 kb on + strand, within ABZR87_RS05690 at 1209.340 kb on - strand, within ABZR87_RS05690 at 1209.360 kb on + strand, within ABZR87_RS05690 at 1209.361 kb on - strand, within ABZR87_RS05690 at 1209.361 kb on - strand, within ABZR87_RS05690 at 1209.373 kb on + strand, within ABZR87_RS05690 at 1209.374 kb on - strand, within ABZR87_RS05690 at 1209.374 kb on - strand, within ABZR87_RS05690 at 1209.436 kb on + strand, within ABZR87_RS05690 at 1209.437 kb on - strand, within ABZR87_RS05690 at 1209.437 kb on - strand, within ABZR87_RS05690 at 1209.524 kb on - strand at 1209.598 kb on + strand at 1209.598 kb on + strand at 1209.598 kb on + strand at 1209.598 kb on + strand at 1209.598 kb on + strand at 1209.599 kb on - strand at 1209.599 kb on - strand at 1209.626 kb on - strand at 1209.642 kb on + strand at 1209.642 kb on + strand at 1209.643 kb on - strand at 1209.643 kb on - strand at 1209.700 kb on + strand at 1209.709 kb on + strand at 1209.710 kb on - strand at 1209.710 kb on - strand at 1209.710 kb on - strand at 1209.966 kb on + strand at 1209.966 kb on + strand at 1209.967 kb on - strand at 1209.967 kb on - strand at 1209.967 kb on - strand at 1209.967 kb on - strand at 1210.592 kb on + strand, within ABZR87_RS05695 at 1210.592 kb on + strand, within ABZR87_RS05695 at 1210.593 kb on - strand, within ABZR87_RS05695 at 1210.593 kb on - strand, within ABZR87_RS05695 at 1210.593 kb on - strand, within ABZR87_RS05695 at 1210.848 kb on + strand at 1210.927 kb on + strand at 1210.927 kb on + strand at 1210.928 kb on - strand at 1210.928 kb on - strand at 1210.941 kb on + strand at 1210.941 kb on + strand at 1210.941 kb on + strand at 1210.942 kb on - strand at 1210.942 kb on - strand at 1210.942 kb on - strand at 1210.985 kb on - strand at 1211.027 kb on + strand at 1211.027 kb on + strand at 1211.028 kb on - strand at 1211.028 kb on - strand at 1211.050 kb on - strand at 1211.070 kb on - strand at 1211.187 kb on + strand, within ABZR87_RS05700 at 1211.187 kb on + strand, within ABZR87_RS05700 at 1211.187 kb on + strand, within ABZR87_RS05700 at 1211.188 kb on - strand, within ABZR87_RS05700 at 1211.188 kb on - strand, within ABZR87_RS05700 at 1211.188 kb on - strand, within ABZR87_RS05700 at 1211.305 kb on - strand, within ABZR87_RS05700 at 1211.305 kb on - strand, within ABZR87_RS05700 at 1211.305 kb on - strand, within ABZR87_RS05700 at 1211.305 kb on - strand, within ABZR87_RS05700 at 1211.305 kb on - strand, within ABZR87_RS05700 at 1211.305 kb on - strand, within ABZR87_RS05700 at 1211.328 kb on + strand, within ABZR87_RS05700 at 1211.328 kb on + strand, within ABZR87_RS05700 at 1211.328 kb on + strand, within ABZR87_RS05700 at 1211.328 kb on + strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.329 kb on - strand, within ABZR87_RS05700 at 1211.331 kb on - strand, within ABZR87_RS05700 at 1211.352 kb on + strand, within ABZR87_RS05700 at 1211.352 kb on + strand, within ABZR87_RS05700 at 1211.352 kb on + strand, within ABZR87_RS05700 at 1211.353 kb on - strand, within ABZR87_RS05700 at 1211.353 kb on - strand, within ABZR87_RS05700 at 1211.353 kb on - strand, within ABZR87_RS05700 at 1211.353 kb on - strand, within ABZR87_RS05700 at 1211.353 kb on - strand, within ABZR87_RS05700 at 1211.430 kb on + strand, within ABZR87_RS05700 at 1211.430 kb on + strand, within ABZR87_RS05700 at 1211.430 kb on + strand, within ABZR87_RS05700 at 1211.431 kb on - strand, within ABZR87_RS05700 at 1211.598 kb on + strand, within ABZR87_RS05700 at 1211.625 kb on + strand, within ABZR87_RS05700 at 1211.625 kb on + strand, within ABZR87_RS05700 at 1211.625 kb on + strand, within ABZR87_RS05700 at 1211.625 kb on + strand, within ABZR87_RS05700 at 1211.626 kb on - strand, within ABZR87_RS05700 at 1211.626 kb on - strand, within ABZR87_RS05700 at 1211.626 kb on - strand, within ABZR87_RS05700 at 1211.626 kb on - strand, within ABZR87_RS05700 at 1211.877 kb on + strand, within ABZR87_RS05700 at 1211.877 kb on + strand, within ABZR87_RS05700 at 1211.877 kb on + strand, within ABZR87_RS05700 at 1211.878 kb on - strand, within ABZR87_RS05700
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 1,208,987 - ABZR87_RS05690 0.62 +0.6 1,209,339 + ABZR87_RS05690 0.82 -0.6 1,209,339 + ABZR87_RS05690 0.82 -2.2 1,209,339 + ABZR87_RS05690 0.82 -1.5 1,209,339 + ABZR87_RS05690 0.82 +1.5 1,209,340 - ABZR87_RS05690 0.82 -1.3 1,209,360 + ABZR87_RS05690 0.84 +1.1 1,209,361 - ABZR87_RS05690 0.84 -0.8 1,209,361 - ABZR87_RS05690 0.84 -0.5 1,209,373 + ABZR87_RS05690 0.84 +1.6 1,209,374 - ABZR87_RS05690 0.84 -2.5 1,209,374 - ABZR87_RS05690 0.84 +0.4 1,209,436 + ABZR87_RS05690 0.88 -0.0 1,209,437 - ABZR87_RS05690 0.88 +0.4 1,209,437 - ABZR87_RS05690 0.88 -1.0 1,209,524 - -0.9 1,209,598 + -1.4 1,209,598 + -1.4 1,209,598 + +0.9 1,209,598 + -0.1 1,209,598 + -0.9 1,209,599 - +0.9 1,209,599 - -1.2 1,209,626 - -2.5 1,209,642 + +1.0 1,209,642 + -1.1 1,209,643 - +0.6 1,209,643 - -1.8 1,209,700 + +0.8 1,209,709 + -1.1 1,209,710 - -0.7 1,209,710 - -0.6 1,209,710 - -0.6 1,209,966 + -2.0 1,209,966 + -0.7 1,209,967 - +0.6 1,209,967 - -0.5 1,209,967 - +0.3 1,209,967 - -0.7 1,210,592 + ABZR87_RS05695 0.69 -1.1 1,210,592 + ABZR87_RS05695 0.69 -0.5 1,210,593 - ABZR87_RS05695 0.69 -1.7 1,210,593 - ABZR87_RS05695 0.69 -1.0 1,210,593 - ABZR87_RS05695 0.69 -0.4 1,210,848 + +1.0 1,210,927 + -0.7 1,210,927 + -0.8 1,210,928 - -2.3 1,210,928 - +0.6 1,210,941 + -1.0 1,210,941 + +1.4 1,210,941 + -1.6 1,210,942 - -0.3 1,210,942 - -1.1 1,210,942 - +1.1 1,210,985 - +0.7 1,211,027 + +0.9 1,211,027 + +0.2 1,211,028 - +1.2 1,211,028 - -0.7 1,211,050 - -0.3 1,211,070 - -0.3 1,211,187 + ABZR87_RS05700 0.14 +0.2 1,211,187 + ABZR87_RS05700 0.14 -0.8 1,211,187 + ABZR87_RS05700 0.14 -0.1 1,211,188 - ABZR87_RS05700 0.14 -1.3 1,211,188 - ABZR87_RS05700 0.14 +0.8 1,211,188 - ABZR87_RS05700 0.14 -0.5 1,211,305 - ABZR87_RS05700 0.26 +1.6 1,211,305 - ABZR87_RS05700 0.26 +0.1 1,211,305 - ABZR87_RS05700 0.26 +0.4 1,211,305 - ABZR87_RS05700 0.26 -1.0 1,211,305 - ABZR87_RS05700 0.26 -0.3 1,211,305 - ABZR87_RS05700 0.26 +0.3 1,211,328 + ABZR87_RS05700 0.29 -0.2 1,211,328 + ABZR87_RS05700 0.29 -0.3 1,211,328 + ABZR87_RS05700 0.29 +0.6 1,211,328 + ABZR87_RS05700 0.29 +0.8 1,211,329 - ABZR87_RS05700 0.29 +1.3 1,211,329 - ABZR87_RS05700 0.29 -0.6 1,211,329 - ABZR87_RS05700 0.29 +0.5 1,211,329 - ABZR87_RS05700 0.29 -1.1 1,211,329 - ABZR87_RS05700 0.29 +0.1 1,211,329 - ABZR87_RS05700 0.29 +0.3 1,211,329 - ABZR87_RS05700 0.29 +1.0 1,211,329 - ABZR87_RS05700 0.29 +0.7 1,211,331 - ABZR87_RS05700 0.29 +0.1 1,211,352 + ABZR87_RS05700 0.31 -0.8 1,211,352 + ABZR87_RS05700 0.31 +0.1 1,211,352 + ABZR87_RS05700 0.31 +0.7 1,211,353 - ABZR87_RS05700 0.31 +0.5 1,211,353 - ABZR87_RS05700 0.31 -0.9 1,211,353 - ABZR87_RS05700 0.31 +1.8 1,211,353 - ABZR87_RS05700 0.31 +0.1 1,211,353 - ABZR87_RS05700 0.31 +0.9 1,211,430 + ABZR87_RS05700 0.40 -0.6 1,211,430 + ABZR87_RS05700 0.40 -0.6 1,211,430 + ABZR87_RS05700 0.40 -2.0 1,211,431 - ABZR87_RS05700 0.40 -0.8 1,211,598 + ABZR87_RS05700 0.57 -1.6 1,211,625 + ABZR87_RS05700 0.60 -3.0 1,211,625 + ABZR87_RS05700 0.60 +1.1 1,211,625 + ABZR87_RS05700 0.60 -2.0 1,211,625 + ABZR87_RS05700 0.60 +0.2 1,211,626 - ABZR87_RS05700 0.60 +0.5 1,211,626 - ABZR87_RS05700 0.60 -1.5 1,211,626 - ABZR87_RS05700 0.60 -0.6 1,211,626 - ABZR87_RS05700 0.60 +0.6 1,211,877 + ABZR87_RS05700 0.87 +0.5 1,211,877 + ABZR87_RS05700 0.87 +0.4 1,211,877 + ABZR87_RS05700 0.87 -0.3 1,211,878 - ABZR87_RS05700 0.87 -0.9
Or see this region's nucleotide sequence