Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05385

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05380 and ABZR87_RS05385 are separated by 276 nucleotidesABZR87_RS05385 and ABZR87_RS05390 are separated by 128 nucleotides ABZR87_RS05380: ABZR87_RS05380 - chromosomal replication initiator protein DnaA, at 1,131,639 to 1,133,228 _RS05380 ABZR87_RS05385: ABZR87_RS05385 - DNA polymerase III subunit beta, at 1,133,505 to 1,134,620 _RS05385 ABZR87_RS05390: ABZR87_RS05390 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 1,134,749 to 1,137,277 _RS05390 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -1 0 1 2at 1133.325 kb on + strandat 1133.325 kb on + strandat 1133.325 kb on + strandat 1133.325 kb on + strandat 1133.326 kb on - strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.331 kb on + strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1133.332 kb on - strandat 1134.595 kb on - strandat 1134.685 kb on + strandat 1134.685 kb on + strandat 1134.712 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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1,133,325 + -0.7
1,133,325 + -0.6
1,133,325 + -0.4
1,133,325 + +1.2
1,133,326 - +1.6
1,133,331 + +1.5
1,133,331 + +1.9
1,133,331 + +0.3
1,133,331 + -0.2
1,133,331 + -1.1
1,133,331 + +0.9
1,133,331 + +0.7
1,133,331 + +0.5
1,133,331 + -0.5
1,133,331 + +1.1
1,133,332 - +1.1
1,133,332 - +0.8
1,133,332 - +1.5
1,133,332 - +1.8
1,133,332 - +0.7
1,133,332 - +0.6
1,133,332 - +0.7
1,134,595 - +0.1
1,134,685 + +0.3
1,134,685 + -0.7
1,134,712 + -0.6

Or see this region's nucleotide sequence