Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04500

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04495 and ABZR87_RS04500 are separated by 31 nucleotidesABZR87_RS04500 and ABZR87_RS04505 overlap by 4 nucleotidesABZR87_RS04505 and ABZR87_RS04510 are separated by 19 nucleotides ABZR87_RS04495: ABZR87_RS04495 - TorF family putative porin, at 938,019 to 938,816 _RS04495 ABZR87_RS04500: ABZR87_RS04500 - hypothetical protein, at 938,848 to 938,973 _RS04500 ABZR87_RS04505: ABZR87_RS04505 - K(+)-transporting ATPase subunit F, at 938,970 to 939,059 _RS04505 ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851 _RS04510 Position (kb) 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 937.855 kb on + strandat 937.876 kb on + strandat 937.888 kb on - strandat 937.890 kb on - strandat 937.902 kb on - strandat 937.902 kb on - strandat 937.902 kb on - strandat 937.998 kb on - strandat 937.998 kb on - strandat 938.184 kb on + strand, within ABZR87_RS04495at 938.185 kb on - strand, within ABZR87_RS04495at 938.190 kb on + strand, within ABZR87_RS04495at 938.191 kb on - strand, within ABZR87_RS04495at 938.245 kb on - strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.265 kb on + strand, within ABZR87_RS04495at 938.266 kb on - strand, within ABZR87_RS04495at 938.266 kb on - strand, within ABZR87_RS04495at 938.266 kb on - strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.355 kb on + strand, within ABZR87_RS04495at 938.356 kb on - strand, within ABZR87_RS04495at 938.356 kb on - strand, within ABZR87_RS04495at 938.406 kb on + strand, within ABZR87_RS04495at 938.407 kb on - strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.409 kb on + strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.410 kb on - strand, within ABZR87_RS04495at 938.412 kb on + strand, within ABZR87_RS04495at 938.425 kb on - strand, within ABZR87_RS04495at 938.437 kb on - strand, within ABZR87_RS04495at 938.437 kb on - strand, within ABZR87_RS04495at 938.463 kb on + strand, within ABZR87_RS04495at 938.500 kb on - strand, within ABZR87_RS04495at 938.500 kb on - strand, within ABZR87_RS04495at 938.538 kb on - strand, within ABZR87_RS04495at 938.554 kb on - strand, within ABZR87_RS04495at 938.554 kb on - strand, within ABZR87_RS04495at 938.554 kb on - strand, within ABZR87_RS04495at 938.597 kb on + strand, within ABZR87_RS04495at 938.597 kb on + strand, within ABZR87_RS04495at 938.598 kb on - strand, within ABZR87_RS04495at 938.598 kb on - strand, within ABZR87_RS04495at 938.619 kb on + strand, within ABZR87_RS04495at 938.655 kb on + strand, within ABZR87_RS04495at 938.655 kb on + strand, within ABZR87_RS04495at 938.656 kb on - strand, within ABZR87_RS04495at 938.656 kb on - strand, within ABZR87_RS04495at 938.719 kb on - strand, within ABZR87_RS04495at 938.719 kb on - strand, within ABZR87_RS04495at 938.749 kb on - strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.769 kb on + strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.770 kb on - strandat 938.847 kb on + strandat 938.848 kb on - strandat 938.848 kb on - strandat 938.848 kb on - strandat 938.861 kb on - strand, within ABZR87_RS04500at 938.861 kb on - strand, within ABZR87_RS04500at 938.861 kb on - strand, within ABZR87_RS04500at 938.982 kb on + strand, within ABZR87_RS04505at 938.982 kb on + strand, within ABZR87_RS04505at 938.982 kb on + strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 938.983 kb on - strand, within ABZR87_RS04505at 939.021 kb on + strand, within ABZR87_RS04505at 939.021 kb on + strand, within ABZR87_RS04505at 939.021 kb on + strand, within ABZR87_RS04505at 939.058 kb on - strandat 939.058 kb on - strandat 939.109 kb on + strandat 939.109 kb on + strandat 939.110 kb on - strandat 939.151 kb on + strandat 939.151 kb on + strandat 939.151 kb on + strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.152 kb on - strandat 939.153 kb on + strandat 939.153 kb on + strandat 939.153 kb on + strandat 939.154 kb on - strandat 939.154 kb on - strandat 939.221 kb on - strandat 939.269 kb on - strand, within ABZR87_RS04510at 939.316 kb on + strand, within ABZR87_RS04510at 939.317 kb on - strand, within ABZR87_RS04510at 939.436 kb on + strand, within ABZR87_RS04510at 939.437 kb on - strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.460 kb on + strand, within ABZR87_RS04510at 939.461 kb on - strand, within ABZR87_RS04510at 939.461 kb on - strand, within ABZR87_RS04510at 939.461 kb on - strand, within ABZR87_RS04510at 939.610 kb on + strand, within ABZR87_RS04510at 939.610 kb on + strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.611 kb on - strand, within ABZR87_RS04510at 939.685 kb on + strand, within ABZR87_RS04510at 939.686 kb on - strand, within ABZR87_RS04510at 939.686 kb on - strand, within ABZR87_RS04510at 939.718 kb on + strand, within ABZR87_RS04510at 939.718 kb on + strand, within ABZR87_RS04510at 939.718 kb on + strand, within ABZR87_RS04510at 939.719 kb on - strand, within ABZR87_RS04510at 939.719 kb on - strand, within ABZR87_RS04510at 939.719 kb on - strand, within ABZR87_RS04510

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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937,855 + -0.4
937,876 + -1.1
937,888 - -1.5
937,890 - +0.2
937,902 - +1.4
937,902 - -0.5
937,902 - -0.9
937,998 - -2.8
937,998 - +0.7
938,184 + ABZR87_RS04495 0.21 -0.2
938,185 - ABZR87_RS04495 0.21 -0.5
938,190 + ABZR87_RS04495 0.21 -2.0
938,191 - ABZR87_RS04495 0.22 +0.4
938,245 - ABZR87_RS04495 0.28 +1.7
938,265 + ABZR87_RS04495 0.31 +0.7
938,265 + ABZR87_RS04495 0.31 +0.2
938,265 + ABZR87_RS04495 0.31 -2.0
938,265 + ABZR87_RS04495 0.31 +0.5
938,266 - ABZR87_RS04495 0.31 +1.2
938,266 - ABZR87_RS04495 0.31 -0.8
938,266 - ABZR87_RS04495 0.31 -1.2
938,355 + ABZR87_RS04495 0.42 -0.4
938,355 + ABZR87_RS04495 0.42 +1.3
938,355 + ABZR87_RS04495 0.42 -3.0
938,355 + ABZR87_RS04495 0.42 -0.3
938,356 - ABZR87_RS04495 0.42 +0.1
938,356 - ABZR87_RS04495 0.42 -0.8
938,406 + ABZR87_RS04495 0.48 -1.1
938,407 - ABZR87_RS04495 0.49 -1.1
938,409 + ABZR87_RS04495 0.49 +0.2
938,409 + ABZR87_RS04495 0.49 -0.3
938,409 + ABZR87_RS04495 0.49 +0.3
938,409 + ABZR87_RS04495 0.49 -2.4
938,410 - ABZR87_RS04495 0.49 -0.7
938,410 - ABZR87_RS04495 0.49 +3.6
938,410 - ABZR87_RS04495 0.49 +0.1
938,410 - ABZR87_RS04495 0.49 -0.6
938,410 - ABZR87_RS04495 0.49 +2.7
938,410 - ABZR87_RS04495 0.49 +1.4
938,410 - ABZR87_RS04495 0.49 -0.0
938,412 + ABZR87_RS04495 0.49 -0.3
938,425 - ABZR87_RS04495 0.51 +1.8
938,437 - ABZR87_RS04495 0.52 +0.8
938,437 - ABZR87_RS04495 0.52 +1.0
938,463 + ABZR87_RS04495 0.56 +0.0
938,500 - ABZR87_RS04495 0.60 -0.2
938,500 - ABZR87_RS04495 0.60 -1.0
938,538 - ABZR87_RS04495 0.65 +0.6
938,554 - ABZR87_RS04495 0.67 +1.1
938,554 - ABZR87_RS04495 0.67 +0.5
938,554 - ABZR87_RS04495 0.67 +1.5
938,597 + ABZR87_RS04495 0.72 -0.8
938,597 + ABZR87_RS04495 0.72 -1.4
938,598 - ABZR87_RS04495 0.73 -0.4
938,598 - ABZR87_RS04495 0.73 -1.6
938,619 + ABZR87_RS04495 0.75 -2.7
938,655 + ABZR87_RS04495 0.80 +1.5
938,655 + ABZR87_RS04495 0.80 +0.2
938,656 - ABZR87_RS04495 0.80 +0.7
938,656 - ABZR87_RS04495 0.80 -0.6
938,719 - ABZR87_RS04495 0.88 -0.8
938,719 - ABZR87_RS04495 0.88 -0.8
938,749 - +2.2
938,769 + +0.9
938,769 + -1.3
938,769 + +0.2
938,769 + +0.6
938,769 + -1.4
938,769 + -1.5
938,770 - -0.2
938,770 - +0.0
938,770 - -0.7
938,770 - -1.9
938,770 - +0.2
938,770 - +0.4
938,770 - -1.2
938,847 + +1.5
938,848 - -0.2
938,848 - -1.2
938,848 - -0.0
938,861 - ABZR87_RS04500 0.10 -1.2
938,861 - ABZR87_RS04500 0.10 +1.9
938,861 - ABZR87_RS04500 0.10 +1.3
938,982 + ABZR87_RS04505 0.13 -0.3
938,982 + ABZR87_RS04505 0.13 +0.3
938,982 + ABZR87_RS04505 0.13 -0.1
938,983 - ABZR87_RS04505 0.14 +0.1
938,983 - ABZR87_RS04505 0.14 -0.3
938,983 - ABZR87_RS04505 0.14 -0.8
938,983 - ABZR87_RS04505 0.14 +0.8
938,983 - ABZR87_RS04505 0.14 -0.5
939,021 + ABZR87_RS04505 0.57 +1.8
939,021 + ABZR87_RS04505 0.57 +1.1
939,021 + ABZR87_RS04505 0.57 +0.2
939,058 - -2.1
939,058 - +0.6
939,109 + +0.3
939,109 + -0.1
939,110 - -0.6
939,151 + +0.4
939,151 + -0.3
939,151 + +0.6
939,152 - -1.0
939,152 - +0.7
939,152 - -1.3
939,152 - -1.3
939,152 - +0.8
939,152 - +1.3
939,152 - +2.5
939,153 + -1.5
939,153 + -0.9
939,153 + -0.7
939,154 - +0.7
939,154 - +0.9
939,221 - -0.3
939,269 - ABZR87_RS04510 0.11 +0.5
939,316 + ABZR87_RS04510 0.13 -1.2
939,317 - ABZR87_RS04510 0.13 +0.8
939,436 + ABZR87_RS04510 0.20 +0.0
939,437 - ABZR87_RS04510 0.20 -1.3
939,460 + ABZR87_RS04510 0.21 +1.0
939,460 + ABZR87_RS04510 0.21 +0.8
939,460 + ABZR87_RS04510 0.21 -1.6
939,460 + ABZR87_RS04510 0.21 +2.1
939,461 - ABZR87_RS04510 0.22 -1.2
939,461 - ABZR87_RS04510 0.22 +1.4
939,461 - ABZR87_RS04510 0.22 +0.7
939,610 + ABZR87_RS04510 0.30 -0.8
939,610 + ABZR87_RS04510 0.30 -0.3
939,611 - ABZR87_RS04510 0.30 -1.3
939,611 - ABZR87_RS04510 0.30 -1.3
939,611 - ABZR87_RS04510 0.30 -0.7
939,611 - ABZR87_RS04510 0.30 +0.7
939,611 - ABZR87_RS04510 0.30 -0.9
939,611 - ABZR87_RS04510 0.30 -0.4
939,685 + ABZR87_RS04510 0.34 +2.1
939,686 - ABZR87_RS04510 0.34 -1.0
939,686 - ABZR87_RS04510 0.34 -1.3
939,718 + ABZR87_RS04510 0.36 -0.7
939,718 + ABZR87_RS04510 0.36 +0.9
939,718 + ABZR87_RS04510 0.36 +0.4
939,719 - ABZR87_RS04510 0.36 -0.8
939,719 - ABZR87_RS04510 0.36 +0.4
939,719 - ABZR87_RS04510 0.36 +0.0

Or see this region's nucleotide sequence