Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04485 and ABZR87_RS04490 overlap by 4 nucleotides ABZR87_RS04490 and ABZR87_RS04495 are separated by 381 nucleotides ABZR87_RS04495 and ABZR87_RS04500 are separated by 31 nucleotides ABZR87_RS04500 and ABZR87_RS04505 overlap by 4 nucleotides ABZR87_RS04505 and ABZR87_RS04510 are separated by 19 nucleotides
ABZR87_RS04485: ABZR87_RS04485 - hypothetical protein, at 936,361 to 937,152
_RS04485
ABZR87_RS04490: ABZR87_RS04490 - hypothetical protein, at 937,149 to 937,637
_RS04490
ABZR87_RS04495: ABZR87_RS04495 - TorF family putative porin, at 938,019 to 938,816
_RS04495
ABZR87_RS04500: ABZR87_RS04500 - hypothetical protein, at 938,848 to 938,973
_RS04500
ABZR87_RS04505: ABZR87_RS04505 - K(+)-transporting ATPase subunit F, at 938,970 to 939,059
_RS04505
ABZR87_RS04510: ABZR87_RS04510 - potassium-transporting ATPase subunit KdpA, at 939,079 to 940,851
_RS04510
Position (kb) 938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 937.064 kb on + strand, within ABZR87_RS04485 at 937.064 kb on + strand, within ABZR87_RS04485 at 937.064 kb on + strand, within ABZR87_RS04485 at 937.100 kb on - strand at 937.100 kb on - strand at 937.105 kb on + strand at 937.105 kb on + strand at 937.106 kb on - strand at 937.108 kb on + strand at 937.108 kb on + strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.109 kb on - strand at 937.121 kb on + strand at 937.144 kb on + strand at 937.144 kb on + strand at 937.145 kb on - strand at 937.203 kb on - strand, within ABZR87_RS04490 at 937.287 kb on - strand, within ABZR87_RS04490 at 937.287 kb on - strand, within ABZR87_RS04490 at 937.287 kb on - strand, within ABZR87_RS04490 at 937.344 kb on - strand, within ABZR87_RS04490 at 937.383 kb on + strand, within ABZR87_RS04490 at 937.547 kb on + strand, within ABZR87_RS04490 at 937.564 kb on - strand, within ABZR87_RS04490 at 937.567 kb on + strand, within ABZR87_RS04490 at 937.580 kb on + strand, within ABZR87_RS04490 at 937.581 kb on - strand, within ABZR87_RS04490 at 937.581 kb on - strand, within ABZR87_RS04490 at 937.729 kb on + strand at 937.730 kb on - strand at 937.732 kb on + strand at 937.732 kb on + strand at 937.732 kb on + strand at 937.733 kb on - strand at 937.733 kb on - strand at 937.733 kb on - strand at 937.771 kb on + strand at 937.771 kb on + strand at 937.772 kb on - strand at 937.844 kb on + strand at 937.855 kb on + strand at 937.876 kb on + strand at 937.888 kb on - strand at 937.890 kb on - strand at 937.902 kb on - strand at 937.902 kb on - strand at 937.902 kb on - strand at 937.998 kb on - strand at 937.998 kb on - strand at 938.184 kb on + strand, within ABZR87_RS04495 at 938.185 kb on - strand, within ABZR87_RS04495 at 938.190 kb on + strand, within ABZR87_RS04495 at 938.191 kb on - strand, within ABZR87_RS04495 at 938.245 kb on - strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.265 kb on + strand, within ABZR87_RS04495 at 938.266 kb on - strand, within ABZR87_RS04495 at 938.266 kb on - strand, within ABZR87_RS04495 at 938.266 kb on - strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.355 kb on + strand, within ABZR87_RS04495 at 938.356 kb on - strand, within ABZR87_RS04495 at 938.356 kb on - strand, within ABZR87_RS04495 at 938.406 kb on + strand, within ABZR87_RS04495 at 938.407 kb on - strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.409 kb on + strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.410 kb on - strand, within ABZR87_RS04495 at 938.412 kb on + strand, within ABZR87_RS04495 at 938.425 kb on - strand, within ABZR87_RS04495 at 938.437 kb on - strand, within ABZR87_RS04495 at 938.437 kb on - strand, within ABZR87_RS04495 at 938.463 kb on + strand, within ABZR87_RS04495 at 938.500 kb on - strand, within ABZR87_RS04495 at 938.500 kb on - strand, within ABZR87_RS04495 at 938.538 kb on - strand, within ABZR87_RS04495 at 938.554 kb on - strand, within ABZR87_RS04495 at 938.554 kb on - strand, within ABZR87_RS04495 at 938.554 kb on - strand, within ABZR87_RS04495 at 938.597 kb on + strand, within ABZR87_RS04495 at 938.597 kb on + strand, within ABZR87_RS04495 at 938.598 kb on - strand, within ABZR87_RS04495 at 938.598 kb on - strand, within ABZR87_RS04495 at 938.619 kb on + strand, within ABZR87_RS04495 at 938.655 kb on + strand, within ABZR87_RS04495 at 938.655 kb on + strand, within ABZR87_RS04495 at 938.656 kb on - strand, within ABZR87_RS04495 at 938.656 kb on - strand, within ABZR87_RS04495 at 938.719 kb on - strand, within ABZR87_RS04495 at 938.719 kb on - strand, within ABZR87_RS04495 at 938.749 kb on - strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.769 kb on + strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.770 kb on - strand at 938.847 kb on + strand at 938.848 kb on - strand at 938.848 kb on - strand at 938.848 kb on - strand at 938.861 kb on - strand, within ABZR87_RS04500 at 938.861 kb on - strand, within ABZR87_RS04500 at 938.861 kb on - strand, within ABZR87_RS04500 at 938.982 kb on + strand, within ABZR87_RS04505 at 938.982 kb on + strand, within ABZR87_RS04505 at 938.982 kb on + strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 938.983 kb on - strand, within ABZR87_RS04505 at 939.021 kb on + strand, within ABZR87_RS04505 at 939.021 kb on + strand, within ABZR87_RS04505 at 939.021 kb on + strand, within ABZR87_RS04505 at 939.058 kb on - strand at 939.058 kb on - strand at 939.109 kb on + strand at 939.109 kb on + strand at 939.110 kb on - strand at 939.151 kb on + strand at 939.151 kb on + strand at 939.151 kb on + strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.152 kb on - strand at 939.153 kb on + strand at 939.153 kb on + strand at 939.153 kb on + strand at 939.154 kb on - strand at 939.154 kb on - strand at 939.221 kb on - strand at 939.269 kb on - strand, within ABZR87_RS04510 at 939.316 kb on + strand, within ABZR87_RS04510 at 939.317 kb on - strand, within ABZR87_RS04510 at 939.436 kb on + strand, within ABZR87_RS04510 at 939.437 kb on - strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.460 kb on + strand, within ABZR87_RS04510 at 939.461 kb on - strand, within ABZR87_RS04510 at 939.461 kb on - strand, within ABZR87_RS04510 at 939.461 kb on - strand, within ABZR87_RS04510 at 939.610 kb on + strand, within ABZR87_RS04510 at 939.610 kb on + strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.611 kb on - strand, within ABZR87_RS04510 at 939.685 kb on + strand, within ABZR87_RS04510 at 939.686 kb on - strand, within ABZR87_RS04510 at 939.686 kb on - strand, within ABZR87_RS04510 at 939.718 kb on + strand, within ABZR87_RS04510 at 939.718 kb on + strand, within ABZR87_RS04510 at 939.718 kb on + strand, within ABZR87_RS04510 at 939.719 kb on - strand, within ABZR87_RS04510 at 939.719 kb on - strand, within ABZR87_RS04510 at 939.719 kb on - strand, within ABZR87_RS04510
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 937,064 + ABZR87_RS04485 0.89 -2.5 937,064 + ABZR87_RS04485 0.89 +0.8 937,064 + ABZR87_RS04485 0.89 -0.5 937,100 - -0.5 937,100 - -0.4 937,105 + -1.0 937,105 + +0.4 937,106 - +0.7 937,108 + -0.7 937,108 + -0.3 937,109 - +1.7 937,109 - -0.5 937,109 - +0.1 937,109 - +3.7 937,109 - -1.7 937,109 - +0.7 937,109 - +1.7 937,109 - -1.3 937,109 - +1.8 937,121 + -0.2 937,144 + +0.4 937,144 + +1.9 937,145 - -1.7 937,203 - ABZR87_RS04490 0.11 -0.7 937,287 - ABZR87_RS04490 0.28 +0.7 937,287 - ABZR87_RS04490 0.28 -0.6 937,287 - ABZR87_RS04490 0.28 -0.5 937,344 - ABZR87_RS04490 0.40 +0.1 937,383 + ABZR87_RS04490 0.48 -0.8 937,547 + ABZR87_RS04490 0.81 -1.1 937,564 - ABZR87_RS04490 0.85 -1.9 937,567 + ABZR87_RS04490 0.85 -0.8 937,580 + ABZR87_RS04490 0.88 -1.5 937,581 - ABZR87_RS04490 0.88 -0.6 937,581 - ABZR87_RS04490 0.88 -1.3 937,729 + -0.3 937,730 - -0.6 937,732 + +4.0 937,732 + +0.6 937,732 + -0.4 937,733 - -0.8 937,733 - +0.3 937,733 - +0.5 937,771 + -0.7 937,771 + +1.3 937,772 - +1.6 937,844 + -1.3 937,855 + -0.4 937,876 + -1.1 937,888 - -1.5 937,890 - +0.2 937,902 - +1.4 937,902 - -0.5 937,902 - -0.9 937,998 - -2.8 937,998 - +0.7 938,184 + ABZR87_RS04495 0.21 -0.2 938,185 - ABZR87_RS04495 0.21 -0.5 938,190 + ABZR87_RS04495 0.21 -2.0 938,191 - ABZR87_RS04495 0.22 +0.4 938,245 - ABZR87_RS04495 0.28 +1.7 938,265 + ABZR87_RS04495 0.31 +0.7 938,265 + ABZR87_RS04495 0.31 +0.2 938,265 + ABZR87_RS04495 0.31 -2.0 938,265 + ABZR87_RS04495 0.31 +0.5 938,266 - ABZR87_RS04495 0.31 +1.2 938,266 - ABZR87_RS04495 0.31 -0.8 938,266 - ABZR87_RS04495 0.31 -1.2 938,355 + ABZR87_RS04495 0.42 -0.4 938,355 + ABZR87_RS04495 0.42 +1.3 938,355 + ABZR87_RS04495 0.42 -3.0 938,355 + ABZR87_RS04495 0.42 -0.3 938,356 - ABZR87_RS04495 0.42 +0.1 938,356 - ABZR87_RS04495 0.42 -0.8 938,406 + ABZR87_RS04495 0.48 -1.1 938,407 - ABZR87_RS04495 0.49 -1.1 938,409 + ABZR87_RS04495 0.49 +0.2 938,409 + ABZR87_RS04495 0.49 -0.3 938,409 + ABZR87_RS04495 0.49 +0.3 938,409 + ABZR87_RS04495 0.49 -2.4 938,410 - ABZR87_RS04495 0.49 -0.7 938,410 - ABZR87_RS04495 0.49 +3.6 938,410 - ABZR87_RS04495 0.49 +0.1 938,410 - ABZR87_RS04495 0.49 -0.6 938,410 - ABZR87_RS04495 0.49 +2.7 938,410 - ABZR87_RS04495 0.49 +1.4 938,410 - ABZR87_RS04495 0.49 -0.0 938,412 + ABZR87_RS04495 0.49 -0.3 938,425 - ABZR87_RS04495 0.51 +1.8 938,437 - ABZR87_RS04495 0.52 +0.8 938,437 - ABZR87_RS04495 0.52 +1.0 938,463 + ABZR87_RS04495 0.56 +0.0 938,500 - ABZR87_RS04495 0.60 -0.2 938,500 - ABZR87_RS04495 0.60 -1.0 938,538 - ABZR87_RS04495 0.65 +0.6 938,554 - ABZR87_RS04495 0.67 +1.1 938,554 - ABZR87_RS04495 0.67 +0.5 938,554 - ABZR87_RS04495 0.67 +1.5 938,597 + ABZR87_RS04495 0.72 -0.8 938,597 + ABZR87_RS04495 0.72 -1.4 938,598 - ABZR87_RS04495 0.73 -0.4 938,598 - ABZR87_RS04495 0.73 -1.6 938,619 + ABZR87_RS04495 0.75 -2.7 938,655 + ABZR87_RS04495 0.80 +1.5 938,655 + ABZR87_RS04495 0.80 +0.2 938,656 - ABZR87_RS04495 0.80 +0.7 938,656 - ABZR87_RS04495 0.80 -0.6 938,719 - ABZR87_RS04495 0.88 -0.8 938,719 - ABZR87_RS04495 0.88 -0.8 938,749 - +2.2 938,769 + +0.9 938,769 + -1.3 938,769 + +0.2 938,769 + +0.6 938,769 + -1.4 938,769 + -1.5 938,770 - -0.2 938,770 - +0.0 938,770 - -0.7 938,770 - -1.9 938,770 - +0.2 938,770 - +0.4 938,770 - -1.2 938,847 + +1.5 938,848 - -0.2 938,848 - -1.2 938,848 - -0.0 938,861 - ABZR87_RS04500 0.10 -1.2 938,861 - ABZR87_RS04500 0.10 +1.9 938,861 - ABZR87_RS04500 0.10 +1.3 938,982 + ABZR87_RS04505 0.13 -0.3 938,982 + ABZR87_RS04505 0.13 +0.3 938,982 + ABZR87_RS04505 0.13 -0.1 938,983 - ABZR87_RS04505 0.14 +0.1 938,983 - ABZR87_RS04505 0.14 -0.3 938,983 - ABZR87_RS04505 0.14 -0.8 938,983 - ABZR87_RS04505 0.14 +0.8 938,983 - ABZR87_RS04505 0.14 -0.5 939,021 + ABZR87_RS04505 0.57 +1.8 939,021 + ABZR87_RS04505 0.57 +1.1 939,021 + ABZR87_RS04505 0.57 +0.2 939,058 - -2.1 939,058 - +0.6 939,109 + +0.3 939,109 + -0.1 939,110 - -0.6 939,151 + +0.4 939,151 + -0.3 939,151 + +0.6 939,152 - -1.0 939,152 - +0.7 939,152 - -1.3 939,152 - -1.3 939,152 - +0.8 939,152 - +1.3 939,152 - +2.5 939,153 + -1.5 939,153 + -0.9 939,153 + -0.7 939,154 - +0.7 939,154 - +0.9 939,221 - -0.3 939,269 - ABZR87_RS04510 0.11 +0.5 939,316 + ABZR87_RS04510 0.13 -1.2 939,317 - ABZR87_RS04510 0.13 +0.8 939,436 + ABZR87_RS04510 0.20 +0.0 939,437 - ABZR87_RS04510 0.20 -1.3 939,460 + ABZR87_RS04510 0.21 +1.0 939,460 + ABZR87_RS04510 0.21 +0.8 939,460 + ABZR87_RS04510 0.21 -1.6 939,460 + ABZR87_RS04510 0.21 +2.1 939,461 - ABZR87_RS04510 0.22 -1.2 939,461 - ABZR87_RS04510 0.22 +1.4 939,461 - ABZR87_RS04510 0.22 +0.7 939,610 + ABZR87_RS04510 0.30 -0.8 939,610 + ABZR87_RS04510 0.30 -0.3 939,611 - ABZR87_RS04510 0.30 -1.3 939,611 - ABZR87_RS04510 0.30 -1.3 939,611 - ABZR87_RS04510 0.30 -0.7 939,611 - ABZR87_RS04510 0.30 +0.7 939,611 - ABZR87_RS04510 0.30 -0.9 939,611 - ABZR87_RS04510 0.30 -0.4 939,685 + ABZR87_RS04510 0.34 +2.1 939,686 - ABZR87_RS04510 0.34 -1.0 939,686 - ABZR87_RS04510 0.34 -1.3 939,718 + ABZR87_RS04510 0.36 -0.7 939,718 + ABZR87_RS04510 0.36 +0.9 939,718 + ABZR87_RS04510 0.36 +0.4 939,719 - ABZR87_RS04510 0.36 -0.8 939,719 - ABZR87_RS04510 0.36 +0.4 939,719 - ABZR87_RS04510 0.36 +0.0
Or see this region's nucleotide sequence