Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04360

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04355 and ABZR87_RS04360 are separated by 60 nucleotidesABZR87_RS04360 and ABZR87_RS04365 are separated by 140 nucleotides ABZR87_RS04355: ABZR87_RS04355 - CoA transferase, at 908,451 to 909,848 _RS04355 ABZR87_RS04360: ABZR87_RS04360 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 909,909 to 910,766 _RS04360 ABZR87_RS04365: ABZR87_RS04365 - polyphosphate kinase 2, at 910,907 to 911,809 _RS04365 Position (kb) 909 910 911Strain fitness (log2 ratio) -2 -1 0 1 2 3at 909.300 kb on - strand, within ABZR87_RS04355at 909.300 kb on - strand, within ABZR87_RS04355at 909.300 kb on - strand, within ABZR87_RS04355at 909.387 kb on + strand, within ABZR87_RS04355at 909.405 kb on + strand, within ABZR87_RS04355at 909.405 kb on + strand, within ABZR87_RS04355at 909.405 kb on + strand, within ABZR87_RS04355at 909.405 kb on + strand, within ABZR87_RS04355at 909.406 kb on - strand, within ABZR87_RS04355at 909.411 kb on + strand, within ABZR87_RS04355at 909.411 kb on + strand, within ABZR87_RS04355at 909.703 kb on - strand, within ABZR87_RS04355at 909.703 kb on - strand, within ABZR87_RS04355at 909.703 kb on - strand, within ABZR87_RS04355at 909.720 kb on + strandat 909.721 kb on - strandat 909.846 kb on + strandat 909.846 kb on + strandat 909.847 kb on - strandat 909.847 kb on - strandat 909.847 kb on - strandat 909.847 kb on - strandat 909.847 kb on - strandat 909.859 kb on + strandat 909.885 kb on - strandat 909.885 kb on - strandat 909.885 kb on - strandat 909.918 kb on + strandat 909.918 kb on + strandat 909.918 kb on + strandat 909.990 kb on + strandat 909.991 kb on - strandat 910.020 kb on + strand, within ABZR87_RS04360at 910.020 kb on + strand, within ABZR87_RS04360at 910.020 kb on + strand, within ABZR87_RS04360at 910.021 kb on - strand, within ABZR87_RS04360at 910.021 kb on - strand, within ABZR87_RS04360at 910.021 kb on - strand, within ABZR87_RS04360at 910.050 kb on + strand, within ABZR87_RS04360at 910.050 kb on + strand, within ABZR87_RS04360at 910.161 kb on + strand, within ABZR87_RS04360at 910.161 kb on + strand, within ABZR87_RS04360at 910.210 kb on - strand, within ABZR87_RS04360at 910.342 kb on - strand, within ABZR87_RS04360at 910.342 kb on - strand, within ABZR87_RS04360at 910.441 kb on - strand, within ABZR87_RS04360at 910.441 kb on - strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.819 kb on + strandat 910.819 kb on + strandat 910.819 kb on + strandat 910.819 kb on + strandat 910.820 kb on - strandat 910.820 kb on - strandat 910.820 kb on - strandat 910.820 kb on - strandat 910.823 kb on + strandat 910.824 kb on - strandat 910.824 kb on - strandat 910.833 kb on + strandat 910.834 kb on - strandat 910.834 kb on - strandat 910.834 kb on - strandat 911.054 kb on + strand, within ABZR87_RS04365at 911.054 kb on + strand, within ABZR87_RS04365at 911.055 kb on - strand, within ABZR87_RS04365at 911.055 kb on - strand, within ABZR87_RS04365at 911.055 kb on - strand, within ABZR87_RS04365at 911.143 kb on - strand, within ABZR87_RS04365at 911.264 kb on + strand, within ABZR87_RS04365at 911.265 kb on - strand, within ABZR87_RS04365at 911.265 kb on - strand, within ABZR87_RS04365at 911.276 kb on + strand, within ABZR87_RS04365at 911.276 kb on + strand, within ABZR87_RS04365at 911.276 kb on + strand, within ABZR87_RS04365at 911.277 kb on - strand, within ABZR87_RS04365at 911.280 kb on + strand, within ABZR87_RS04365at 911.280 kb on + strand, within ABZR87_RS04365at 911.280 kb on + strand, within ABZR87_RS04365at 911.281 kb on - strand, within ABZR87_RS04365at 911.330 kb on + strand, within ABZR87_RS04365at 911.331 kb on - strand, within ABZR87_RS04365at 911.381 kb on + strand, within ABZR87_RS04365at 911.381 kb on + strand, within ABZR87_RS04365at 911.453 kb on + strand, within ABZR87_RS04365at 911.454 kb on - strand, within ABZR87_RS04365at 911.573 kb on + strand, within ABZR87_RS04365at 911.573 kb on + strand, within ABZR87_RS04365at 911.573 kb on + strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.575 kb on + strand, within ABZR87_RS04365at 911.576 kb on - strand, within ABZR87_RS04365at 911.576 kb on - strand, within ABZR87_RS04365at 911.702 kb on + strand, within ABZR87_RS04365at 911.702 kb on + strand, within ABZR87_RS04365at 911.703 kb on - strand, within ABZR87_RS04365at 911.759 kb on + strandat 911.759 kb on + strandat 911.759 kb on + strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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909,300 - ABZR87_RS04355 0.61 +0.7
909,300 - ABZR87_RS04355 0.61 -0.5
909,300 - ABZR87_RS04355 0.61 +0.3
909,387 + ABZR87_RS04355 0.67 +0.1
909,405 + ABZR87_RS04355 0.68 +0.4
909,405 + ABZR87_RS04355 0.68 -1.7
909,405 + ABZR87_RS04355 0.68 -0.1
909,405 + ABZR87_RS04355 0.68 -0.4
909,406 - ABZR87_RS04355 0.68 -1.5
909,411 + ABZR87_RS04355 0.69 -0.6
909,411 + ABZR87_RS04355 0.69 +0.2
909,703 - ABZR87_RS04355 0.90 -1.4
909,703 - ABZR87_RS04355 0.90 +0.6
909,703 - ABZR87_RS04355 0.90 +0.4
909,720 + -0.5
909,721 - -2.0
909,846 + +0.4
909,846 + +0.2
909,847 - -0.9
909,847 - +1.7
909,847 - -0.9
909,847 - +1.4
909,847 - -2.5
909,859 + -0.1
909,885 - +0.4
909,885 - -1.8
909,885 - +0.6
909,918 + +0.4
909,918 + +0.0
909,918 + +0.2
909,990 + +0.7
909,991 - +0.6
910,020 + ABZR87_RS04360 0.13 +0.2
910,020 + ABZR87_RS04360 0.13 -0.2
910,020 + ABZR87_RS04360 0.13 +0.8
910,021 - ABZR87_RS04360 0.13 -0.1
910,021 - ABZR87_RS04360 0.13 +1.5
910,021 - ABZR87_RS04360 0.13 -1.8
910,050 + ABZR87_RS04360 0.16 -1.0
910,050 + ABZR87_RS04360 0.16 -0.9
910,161 + ABZR87_RS04360 0.29 +2.2
910,161 + ABZR87_RS04360 0.29 -0.3
910,210 - ABZR87_RS04360 0.35 +1.8
910,342 - ABZR87_RS04360 0.50 -1.0
910,342 - ABZR87_RS04360 0.50 -1.8
910,441 - ABZR87_RS04360 0.62 -1.9
910,441 - ABZR87_RS04360 0.62 -2.1
910,497 + ABZR87_RS04360 0.69 +1.1
910,497 + ABZR87_RS04360 0.69 +2.8
910,497 + ABZR87_RS04360 0.69 -1.3
910,497 + ABZR87_RS04360 0.69 -2.5
910,497 + ABZR87_RS04360 0.69 -1.1
910,497 + ABZR87_RS04360 0.69 -0.7
910,497 + ABZR87_RS04360 0.69 -0.8
910,497 + ABZR87_RS04360 0.69 -0.8
910,498 - ABZR87_RS04360 0.69 -0.3
910,498 - ABZR87_RS04360 0.69 +0.2
910,498 - ABZR87_RS04360 0.69 +0.5
910,498 - ABZR87_RS04360 0.69 +1.0
910,498 - ABZR87_RS04360 0.69 +0.0
910,498 - ABZR87_RS04360 0.69 -1.2
910,498 - ABZR87_RS04360 0.69 +0.6
910,819 + +0.2
910,819 + +2.9
910,819 + +0.7
910,819 + -1.2
910,820 - -1.1
910,820 - -0.6
910,820 - -0.2
910,820 - -0.7
910,823 + +0.4
910,824 - +0.3
910,824 - -0.2
910,833 + +1.0
910,834 - -0.9
910,834 - +0.1
910,834 - +0.6
911,054 + ABZR87_RS04365 0.16 +1.8
911,054 + ABZR87_RS04365 0.16 +0.4
911,055 - ABZR87_RS04365 0.16 +0.6
911,055 - ABZR87_RS04365 0.16 +1.5
911,055 - ABZR87_RS04365 0.16 -0.5
911,143 - ABZR87_RS04365 0.26 -1.6
911,264 + ABZR87_RS04365 0.40 -2.4
911,265 - ABZR87_RS04365 0.40 +1.6
911,265 - ABZR87_RS04365 0.40 -1.0
911,276 + ABZR87_RS04365 0.41 -1.0
911,276 + ABZR87_RS04365 0.41 -0.0
911,276 + ABZR87_RS04365 0.41 +0.7
911,277 - ABZR87_RS04365 0.41 -0.7
911,280 + ABZR87_RS04365 0.41 -0.6
911,280 + ABZR87_RS04365 0.41 -0.2
911,280 + ABZR87_RS04365 0.41 +0.6
911,281 - ABZR87_RS04365 0.41 -0.1
911,330 + ABZR87_RS04365 0.47 -1.3
911,331 - ABZR87_RS04365 0.47 -0.8
911,381 + ABZR87_RS04365 0.52 -0.5
911,381 + ABZR87_RS04365 0.52 +0.5
911,453 + ABZR87_RS04365 0.60 -0.6
911,454 - ABZR87_RS04365 0.61 +2.5
911,573 + ABZR87_RS04365 0.74 -0.5
911,573 + ABZR87_RS04365 0.74 -1.4
911,573 + ABZR87_RS04365 0.74 +1.1
911,574 - ABZR87_RS04365 0.74 -0.4
911,574 - ABZR87_RS04365 0.74 -0.4
911,574 - ABZR87_RS04365 0.74 -0.1
911,574 - ABZR87_RS04365 0.74 +0.4
911,575 + ABZR87_RS04365 0.74 +1.8
911,576 - ABZR87_RS04365 0.74 -0.7
911,576 - ABZR87_RS04365 0.74 -1.7
911,702 + ABZR87_RS04365 0.88 +0.5
911,702 + ABZR87_RS04365 0.88 +0.4
911,703 - ABZR87_RS04365 0.88 +1.0
911,759 + -1.0
911,759 + -0.6
911,759 + +2.5
911,760 - +0.4
911,760 - +1.0
911,760 - +0.5
911,760 - -1.6
911,760 - -0.7
911,760 - +1.1

Or see this region's nucleotide sequence