Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04265 and ABZR87_RS04270 are separated by 60 nucleotides ABZR87_RS04270 and ABZR87_RS04275 are separated by 18 nucleotides ABZR87_RS04275 and ABZR87_RS04280 are separated by 76 nucleotides ABZR87_RS04280 and ABZR87_RS04285 are separated by 8 nucleotides
ABZR87_RS04265: ABZR87_RS04265 - phenylalanine 4-monooxygenase, at 890,732 to 891,676
_RS04265
ABZR87_RS04270: ABZR87_RS04270 - 4a-hydroxytetrahydrobiopterin dehydratase, at 891,737 to 892,051
_RS04270
ABZR87_RS04275: ABZR87_RS04275 - DUF3717 domain-containing protein, at 892,070 to 892,297
_RS04275
ABZR87_RS04280: ABZR87_RS04280 - response regulator transcription factor, at 892,374 to 893,084
_RS04280
ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766
_RS04285
Position (kb) 892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 891.171 kb on - strand, within ABZR87_RS04265 at 891.171 kb on - strand, within ABZR87_RS04265 at 891.171 kb on - strand, within ABZR87_RS04265 at 891.245 kb on + strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.317 kb on + strand, within ABZR87_RS04265 at 891.317 kb on + strand, within ABZR87_RS04265 at 891.318 kb on - strand, within ABZR87_RS04265 at 891.318 kb on - strand, within ABZR87_RS04265 at 891.323 kb on + strand, within ABZR87_RS04265 at 891.323 kb on + strand, within ABZR87_RS04265 at 891.323 kb on + strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.372 kb on - strand, within ABZR87_RS04265 at 891.372 kb on - strand, within ABZR87_RS04265 at 891.372 kb on - strand, within ABZR87_RS04265 at 891.411 kb on - strand, within ABZR87_RS04265 at 891.411 kb on - strand, within ABZR87_RS04265 at 891.411 kb on - strand, within ABZR87_RS04265 at 891.503 kb on + strand, within ABZR87_RS04265 at 891.503 kb on + strand, within ABZR87_RS04265 at 891.503 kb on + strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.566 kb on + strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.628 kb on - strand at 891.628 kb on - strand at 891.628 kb on - strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.701 kb on + strand at 891.701 kb on + strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 892.049 kb on + strand at 892.049 kb on + strand at 892.049 kb on + strand at 892.050 kb on - strand at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.665 kb on + strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.986 kb on + strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 892.987 kb on - strand, within ABZR87_RS04280 at 893.055 kb on + strand at 893.082 kb on + strand at 893.082 kb on + strand at 893.082 kb on + strand at 893.083 kb on - strand at 893.240 kb on + strand at 893.240 kb on + strand at 893.241 kb on - strand at 893.241 kb on - strand at 893.241 kb on - strand at 893.258 kb on + strand at 893.258 kb on + strand at 893.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 891,171 - ABZR87_RS04265 0.46 +1.4 891,171 - ABZR87_RS04265 0.46 -0.6 891,171 - ABZR87_RS04265 0.46 -0.1 891,245 + ABZR87_RS04265 0.54 +1.5 891,246 - ABZR87_RS04265 0.54 +1.4 891,246 - ABZR87_RS04265 0.54 +1.8 891,246 - ABZR87_RS04265 0.54 +0.6 891,246 - ABZR87_RS04265 0.54 -0.1 891,317 + ABZR87_RS04265 0.62 -1.0 891,317 + ABZR87_RS04265 0.62 +1.9 891,318 - ABZR87_RS04265 0.62 +1.7 891,318 - ABZR87_RS04265 0.62 -0.5 891,323 + ABZR87_RS04265 0.63 -0.8 891,323 + ABZR87_RS04265 0.63 -0.2 891,323 + ABZR87_RS04265 0.63 -0.5 891,324 - ABZR87_RS04265 0.63 +0.7 891,324 - ABZR87_RS04265 0.63 +0.2 891,324 - ABZR87_RS04265 0.63 -0.1 891,324 - ABZR87_RS04265 0.63 +1.7 891,371 + ABZR87_RS04265 0.68 -0.9 891,371 + ABZR87_RS04265 0.68 -0.5 891,371 + ABZR87_RS04265 0.68 +0.8 891,371 + ABZR87_RS04265 0.68 +0.3 891,372 - ABZR87_RS04265 0.68 +0.8 891,372 - ABZR87_RS04265 0.68 +1.0 891,372 - ABZR87_RS04265 0.68 +0.9 891,411 - ABZR87_RS04265 0.72 -0.4 891,411 - ABZR87_RS04265 0.72 +0.2 891,411 - ABZR87_RS04265 0.72 +0.5 891,503 + ABZR87_RS04265 0.82 -1.1 891,503 + ABZR87_RS04265 0.82 +1.3 891,503 + ABZR87_RS04265 0.82 -0.0 891,504 - ABZR87_RS04265 0.82 +2.0 891,504 - ABZR87_RS04265 0.82 -0.3 891,504 - ABZR87_RS04265 0.82 +1.8 891,504 - ABZR87_RS04265 0.82 +1.1 891,504 - ABZR87_RS04265 0.82 -0.5 891,504 - ABZR87_RS04265 0.82 -0.3 891,504 - ABZR87_RS04265 0.82 -0.2 891,504 - ABZR87_RS04265 0.82 +0.0 891,566 + ABZR87_RS04265 0.88 +0.1 891,567 - ABZR87_RS04265 0.88 +2.3 891,567 - ABZR87_RS04265 0.88 -0.4 891,567 - ABZR87_RS04265 0.88 +0.3 891,567 - ABZR87_RS04265 0.88 -1.1 891,567 - ABZR87_RS04265 0.88 -1.1 891,628 - +0.7 891,628 - +2.1 891,628 - +0.2 891,699 + +0.3 891,699 + -0.4 891,699 + -1.3 891,699 + -0.4 891,699 + -0.6 891,700 - -0.3 891,700 - +0.5 891,700 - -1.5 891,700 - +0.3 891,700 - +0.4 891,700 - +0.5 891,701 + +0.4 891,701 + -0.8 891,702 - +1.5 891,702 - -0.5 891,702 - +1.9 891,702 - +2.3 891,702 - -1.0 891,702 - +1.4 891,702 - +0.1 891,946 + ABZR87_RS04270 0.66 +0.9 891,946 + ABZR87_RS04270 0.66 -1.0 891,946 + ABZR87_RS04270 0.66 -0.6 891,946 + ABZR87_RS04270 0.66 -0.6 891,946 + ABZR87_RS04270 0.66 +0.5 891,946 + ABZR87_RS04270 0.66 -2.4 891,946 + ABZR87_RS04270 0.66 -0.0 891,946 + ABZR87_RS04270 0.66 -0.8 891,946 + ABZR87_RS04270 0.66 -1.0 891,946 + ABZR87_RS04270 0.66 -1.2 891,947 - ABZR87_RS04270 0.67 +0.3 891,947 - ABZR87_RS04270 0.67 -0.8 891,947 - ABZR87_RS04270 0.67 -1.5 891,947 - ABZR87_RS04270 0.67 +3.1 892,049 + +0.5 892,049 + +0.2 892,049 + +5.3 892,050 - -1.9 892,101 + ABZR87_RS04275 0.14 +0.1 892,101 + ABZR87_RS04275 0.14 -0.7 892,101 + ABZR87_RS04275 0.14 -2.9 892,101 + ABZR87_RS04275 0.14 +0.2 892,101 + ABZR87_RS04275 0.14 +1.9 892,102 - ABZR87_RS04275 0.14 +0.3 892,102 - ABZR87_RS04275 0.14 +0.4 892,157 + ABZR87_RS04275 0.38 -1.1 892,157 + ABZR87_RS04275 0.38 -0.3 892,157 + ABZR87_RS04275 0.38 +0.2 892,157 + ABZR87_RS04275 0.38 +1.3 892,157 + ABZR87_RS04275 0.38 -0.4 892,157 + ABZR87_RS04275 0.38 -1.3 892,157 + ABZR87_RS04275 0.38 +1.9 892,157 + ABZR87_RS04275 0.38 -1.3 892,157 + ABZR87_RS04275 0.38 -1.6 892,157 + ABZR87_RS04275 0.38 -1.0 892,158 - ABZR87_RS04275 0.39 -1.0 892,158 - ABZR87_RS04275 0.39 +0.7 892,158 - ABZR87_RS04275 0.39 -2.2 892,158 - ABZR87_RS04275 0.39 +1.9 892,158 - ABZR87_RS04275 0.39 -1.0 892,158 - ABZR87_RS04275 0.39 +1.0 892,173 + ABZR87_RS04275 0.45 -0.4 892,173 + ABZR87_RS04275 0.45 +0.6 892,174 - ABZR87_RS04275 0.46 +1.5 892,174 - ABZR87_RS04275 0.46 -0.4 892,174 - ABZR87_RS04275 0.46 -0.1 892,308 + +1.5 892,308 + -0.2 892,308 + +0.2 892,308 + -1.6 892,308 + -0.9 892,309 - +0.5 892,309 - -1.5 892,309 - -0.9 892,309 - -0.1 892,309 - +0.2 892,309 - -0.4 892,309 - +0.3 892,665 + ABZR87_RS04280 0.41 -0.1 892,666 - ABZR87_RS04280 0.41 -0.4 892,666 - ABZR87_RS04280 0.41 -1.0 892,666 - ABZR87_RS04280 0.41 +2.5 892,666 - ABZR87_RS04280 0.41 +0.3 892,666 - ABZR87_RS04280 0.41 +1.1 892,666 - ABZR87_RS04280 0.41 +2.3 892,986 + ABZR87_RS04280 0.86 +0.8 892,986 + ABZR87_RS04280 0.86 +1.1 892,986 + ABZR87_RS04280 0.86 -1.5 892,986 + ABZR87_RS04280 0.86 -0.8 892,986 + ABZR87_RS04280 0.86 -1.1 892,986 + ABZR87_RS04280 0.86 -1.1 892,986 + ABZR87_RS04280 0.86 +1.0 892,986 + ABZR87_RS04280 0.86 -1.1 892,986 + ABZR87_RS04280 0.86 +1.1 892,986 + ABZR87_RS04280 0.86 +0.6 892,987 - ABZR87_RS04280 0.86 +1.5 892,987 - ABZR87_RS04280 0.86 -0.2 892,987 - ABZR87_RS04280 0.86 -0.8 892,987 - ABZR87_RS04280 0.86 -0.2 892,987 - ABZR87_RS04280 0.86 -0.3 892,987 - ABZR87_RS04280 0.86 -0.1 892,987 - ABZR87_RS04280 0.86 +0.8 892,987 - ABZR87_RS04280 0.86 -0.7 892,987 - ABZR87_RS04280 0.86 -0.8 892,987 - ABZR87_RS04280 0.86 -1.2 892,987 - ABZR87_RS04280 0.86 -0.1 892,987 - ABZR87_RS04280 0.86 -0.9 892,987 - ABZR87_RS04280 0.86 +0.1 892,987 - ABZR87_RS04280 0.86 -0.3 892,987 - ABZR87_RS04280 0.86 +0.4 893,055 + +0.1 893,082 + +0.3 893,082 + -0.6 893,082 + +2.7 893,083 - +0.5 893,240 + -0.5 893,240 + -0.0 893,241 - +1.4 893,241 - -0.7 893,241 - -0.1 893,258 + +0.4 893,258 + -0.1 893,259 - +1.3
Or see this region's nucleotide sequence