Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04155

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04150 and ABZR87_RS04155 are separated by 5 nucleotidesABZR87_RS04155 and ABZR87_RS04160 are separated by 12 nucleotides ABZR87_RS04150: ABZR87_RS04150 - LysR family transcriptional regulator CrgA, at 870,432 to 871,340 _RS04150 ABZR87_RS04155: ABZR87_RS04155 - DUF3820 family protein, at 871,346 to 871,561 _RS04155 ABZR87_RS04160: ABZR87_RS04160 - LysR family transcriptional regulator, at 871,574 to 872,470 _RS04160 Position (kb) 871 872Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 870.362 kb on - strandat 870.388 kb on - strandat 870.398 kb on + strandat 870.399 kb on - strandat 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.627 kb on + strand, within ABZR87_RS04150at 870.627 kb on + strand, within ABZR87_RS04150at 870.627 kb on + strand, within ABZR87_RS04150at 870.628 kb on - strand, within ABZR87_RS04150at 870.628 kb on - strand, within ABZR87_RS04150at 870.628 kb on - strand, within ABZR87_RS04150at 870.628 kb on - strand, within ABZR87_RS04150at 870.912 kb on + strand, within ABZR87_RS04150at 870.912 kb on + strand, within ABZR87_RS04150at 870.942 kb on + strand, within ABZR87_RS04150at 870.942 kb on + strand, within ABZR87_RS04150at 870.942 kb on + strand, within ABZR87_RS04150at 870.943 kb on - strand, within ABZR87_RS04150at 870.943 kb on - strand, within ABZR87_RS04150at 870.943 kb on - strand, within ABZR87_RS04150at 870.954 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.209 kb on + strand, within ABZR87_RS04150at 871.210 kb on - strand, within ABZR87_RS04150at 871.242 kb on + strand, within ABZR87_RS04150at 871.243 kb on - strand, within ABZR87_RS04150at 871.338 kb on + strandat 871.338 kb on + strandat 871.339 kb on - strandat 871.339 kb on - strandat 871.400 kb on + strand, within ABZR87_RS04155at 871.400 kb on + strand, within ABZR87_RS04155at 871.400 kb on + strand, within ABZR87_RS04155at 871.400 kb on + strand, within ABZR87_RS04155at 871.400 kb on + strand, within ABZR87_RS04155at 871.401 kb on - strand, within ABZR87_RS04155at 871.401 kb on - strand, within ABZR87_RS04155at 871.401 kb on - strand, within ABZR87_RS04155at 871.401 kb on - strand, within ABZR87_RS04155at 871.436 kb on + strand, within ABZR87_RS04155at 871.436 kb on + strand, within ABZR87_RS04155at 871.436 kb on + strand, within ABZR87_RS04155at 871.437 kb on - strand, within ABZR87_RS04155at 871.437 kb on - strand, within ABZR87_RS04155at 871.437 kb on - strand, within ABZR87_RS04155at 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.590 kb on + strandat 871.591 kb on - strandat 871.591 kb on - strandat 871.591 kb on - strandat 871.885 kb on - strand, within ABZR87_RS04160at 871.948 kb on - strand, within ABZR87_RS04160at 871.948 kb on - strand, within ABZR87_RS04160at 871.948 kb on - strand, within ABZR87_RS04160at 872.107 kb on - strand, within ABZR87_RS04160at 872.160 kb on + strand, within ABZR87_RS04160at 872.439 kb on + strandat 872.440 kb on - strandat 872.440 kb on - strandat 872.470 kb on + strandat 872.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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870,362 - -0.2
870,388 - +1.4
870,398 + -1.4
870,399 - +1.0
870,537 + ABZR87_RS04150 0.12 +0.1
870,537 + ABZR87_RS04150 0.12 -0.4
870,537 + ABZR87_RS04150 0.12 -0.7
870,537 + ABZR87_RS04150 0.12 -1.0
870,537 + ABZR87_RS04150 0.12 -1.0
870,537 + ABZR87_RS04150 0.12 -0.6
870,537 + ABZR87_RS04150 0.12 +10.5
870,537 + ABZR87_RS04150 0.12 -1.2
870,537 + ABZR87_RS04150 0.12 +0.8
870,537 + ABZR87_RS04150 0.12 -0.0
870,538 - ABZR87_RS04150 0.12 +0.7
870,538 - ABZR87_RS04150 0.12 +0.3
870,538 - ABZR87_RS04150 0.12 +1.5
870,538 - ABZR87_RS04150 0.12 +1.7
870,538 - ABZR87_RS04150 0.12 -2.1
870,538 - ABZR87_RS04150 0.12 +0.8
870,538 - ABZR87_RS04150 0.12 +1.1
870,627 + ABZR87_RS04150 0.21 -0.5
870,627 + ABZR87_RS04150 0.21 -1.4
870,627 + ABZR87_RS04150 0.21 +0.1
870,628 - ABZR87_RS04150 0.22 +0.3
870,628 - ABZR87_RS04150 0.22 +0.0
870,628 - ABZR87_RS04150 0.22 +0.4
870,628 - ABZR87_RS04150 0.22 +2.4
870,912 + ABZR87_RS04150 0.53 -0.7
870,912 + ABZR87_RS04150 0.53 -0.0
870,942 + ABZR87_RS04150 0.56 -0.5
870,942 + ABZR87_RS04150 0.56 -0.3
870,942 + ABZR87_RS04150 0.56 +0.1
870,943 - ABZR87_RS04150 0.56 +1.1
870,943 - ABZR87_RS04150 0.56 +2.9
870,943 - ABZR87_RS04150 0.56 +0.7
870,954 + ABZR87_RS04150 0.57 +0.1
871,209 + ABZR87_RS04150 0.85 -1.0
871,209 + ABZR87_RS04150 0.85 +1.6
871,209 + ABZR87_RS04150 0.85 +0.1
871,209 + ABZR87_RS04150 0.85 +0.7
871,209 + ABZR87_RS04150 0.85 +0.7
871,209 + ABZR87_RS04150 0.85 -1.0
871,209 + ABZR87_RS04150 0.85 -1.3
871,209 + ABZR87_RS04150 0.85 +0.7
871,209 + ABZR87_RS04150 0.85 -0.5
871,210 - ABZR87_RS04150 0.86 +0.5
871,242 + ABZR87_RS04150 0.89 +0.4
871,243 - ABZR87_RS04150 0.89 +0.3
871,338 + -1.7
871,338 + -1.4
871,339 - -0.3
871,339 - -0.7
871,400 + ABZR87_RS04155 0.25 -1.6
871,400 + ABZR87_RS04155 0.25 -0.0
871,400 + ABZR87_RS04155 0.25 +0.4
871,400 + ABZR87_RS04155 0.25 -0.2
871,400 + ABZR87_RS04155 0.25 -0.7
871,401 - ABZR87_RS04155 0.25 -0.6
871,401 - ABZR87_RS04155 0.25 -1.1
871,401 - ABZR87_RS04155 0.25 -1.4
871,401 - ABZR87_RS04155 0.25 -0.4
871,436 + ABZR87_RS04155 0.42 -0.5
871,436 + ABZR87_RS04155 0.42 +0.1
871,436 + ABZR87_RS04155 0.42 +0.0
871,437 - ABZR87_RS04155 0.42 -2.0
871,437 - ABZR87_RS04155 0.42 -0.6
871,437 - ABZR87_RS04155 0.42 -1.3
871,590 + +0.9
871,590 + -0.4
871,590 + +0.0
871,590 + -2.5
871,590 + -0.7
871,590 + -2.4
871,590 + -0.2
871,590 + +0.8
871,590 + +2.3
871,591 - -0.2
871,591 - +0.0
871,591 - +1.9
871,885 - ABZR87_RS04160 0.35 +0.3
871,948 - ABZR87_RS04160 0.42 +0.9
871,948 - ABZR87_RS04160 0.42 -0.1
871,948 - ABZR87_RS04160 0.42 -0.9
872,107 - ABZR87_RS04160 0.59 -0.8
872,160 + ABZR87_RS04160 0.65 -1.4
872,439 + -1.7
872,440 - -2.4
872,440 - -0.7
872,470 + +0.4
872,481 - -0.0

Or see this region's nucleotide sequence