Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03280 and ABZR87_RS03285 are separated by 499 nucleotides ABZR87_RS03285 and ABZR87_RS03290 are separated by 157 nucleotides
ABZR87_RS03280: ABZR87_RS03280 - porin, at 690,525 to 691,655
_RS03280
ABZR87_RS03285: ABZR87_RS03285 - hypothetical protein, at 692,155 to 692,439
_RS03285
ABZR87_RS03290: ABZR87_RS03290 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 692,597 to 694,795
_RS03290
Position (kb) 692
693 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 691.186 kb on + strand, within ABZR87_RS03280 at 691.186 kb on + strand, within ABZR87_RS03280 at 691.186 kb on + strand, within ABZR87_RS03280 at 691.186 kb on + strand, within ABZR87_RS03280 at 691.187 kb on - strand, within ABZR87_RS03280 at 691.187 kb on - strand, within ABZR87_RS03280 at 691.187 kb on - strand, within ABZR87_RS03280 at 691.225 kb on + strand, within ABZR87_RS03280 at 691.225 kb on + strand, within ABZR87_RS03280 at 691.225 kb on + strand, within ABZR87_RS03280 at 691.226 kb on - strand, within ABZR87_RS03280 at 691.226 kb on - strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.228 kb on + strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.229 kb on - strand, within ABZR87_RS03280 at 691.249 kb on + strand, within ABZR87_RS03280 at 691.249 kb on + strand, within ABZR87_RS03280 at 691.249 kb on + strand, within ABZR87_RS03280 at 691.249 kb on + strand, within ABZR87_RS03280 at 691.249 kb on + strand, within ABZR87_RS03280 at 691.249 kb on + strand, within ABZR87_RS03280 at 691.250 kb on - strand, within ABZR87_RS03280 at 691.250 kb on - strand, within ABZR87_RS03280 at 691.250 kb on - strand, within ABZR87_RS03280 at 691.253 kb on + strand, within ABZR87_RS03280 at 691.253 kb on + strand, within ABZR87_RS03280 at 691.253 kb on + strand, within ABZR87_RS03280 at 691.253 kb on + strand, within ABZR87_RS03280 at 691.253 kb on + strand, within ABZR87_RS03280 at 691.303 kb on + strand, within ABZR87_RS03280 at 691.303 kb on + strand, within ABZR87_RS03280 at 691.303 kb on + strand, within ABZR87_RS03280 at 691.303 kb on + strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.304 kb on - strand, within ABZR87_RS03280 at 691.376 kb on + strand, within ABZR87_RS03280 at 691.549 kb on + strand at 691.549 kb on + strand at 691.549 kb on + strand at 691.549 kb on + strand at 691.549 kb on + strand at 691.549 kb on + strand at 691.549 kb on + strand at 691.549 kb on + strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.550 kb on - strand at 691.571 kb on + strand at 691.571 kb on + strand at 691.571 kb on + strand at 691.572 kb on - strand at 691.572 kb on - strand at 691.572 kb on - strand at 691.576 kb on + strand at 691.576 kb on + strand at 691.576 kb on + strand at 691.576 kb on + strand at 691.577 kb on - strand at 691.600 kb on + strand at 691.601 kb on - strand at 691.601 kb on - strand at 691.601 kb on - strand at 691.601 kb on - strand at 691.665 kb on + strand at 691.666 kb on - strand at 691.668 kb on + strand at 691.668 kb on + strand at 691.669 kb on - strand at 691.729 kb on + strand at 691.729 kb on + strand at 691.730 kb on - strand at 691.773 kb on + strand at 691.774 kb on - strand at 691.774 kb on - strand at 691.806 kb on - strand at 691.806 kb on - strand at 691.806 kb on - strand at 691.817 kb on + strand at 691.817 kb on + strand at 691.817 kb on + strand at 691.834 kb on + strand at 691.835 kb on - strand at 691.857 kb on + strand at 691.857 kb on + strand at 691.857 kb on + strand at 691.857 kb on + strand at 691.857 kb on + strand at 691.858 kb on - strand at 691.858 kb on - strand at 691.858 kb on - strand at 691.936 kb on + strand at 691.936 kb on + strand at 691.970 kb on - strand at 691.970 kb on - strand at 692.058 kb on - strand at 692.061 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.062 kb on + strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.063 kb on - strand at 692.076 kb on + strand at 692.076 kb on + strand at 692.076 kb on + strand at 692.076 kb on + strand at 692.076 kb on + strand at 692.076 kb on + strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.077 kb on - strand at 692.083 kb on + strand at 692.083 kb on + strand at 692.084 kb on - strand at 692.084 kb on - strand at 692.084 kb on - strand at 692.084 kb on - strand at 692.084 kb on - strand at 692.116 kb on - strand at 692.284 kb on + strand, within ABZR87_RS03285 at 692.284 kb on + strand, within ABZR87_RS03285 at 692.284 kb on + strand, within ABZR87_RS03285 at 692.284 kb on + strand, within ABZR87_RS03285 at 692.285 kb on - strand, within ABZR87_RS03285 at 692.316 kb on + strand, within ABZR87_RS03285 at 692.316 kb on + strand, within ABZR87_RS03285 at 692.316 kb on + strand, within ABZR87_RS03285 at 692.317 kb on - strand, within ABZR87_RS03285 at 692.317 kb on - strand, within ABZR87_RS03285 at 692.317 kb on - strand, within ABZR87_RS03285 at 692.317 kb on - strand, within ABZR87_RS03285 at 692.317 kb on - strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.320 kb on + strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.321 kb on - strand, within ABZR87_RS03285 at 692.322 kb on + strand, within ABZR87_RS03285 at 692.323 kb on - strand, within ABZR87_RS03285 at 692.323 kb on - strand, within ABZR87_RS03285 at 692.323 kb on - strand, within ABZR87_RS03285 at 692.323 kb on - strand, within ABZR87_RS03285 at 692.323 kb on - strand, within ABZR87_RS03285 at 692.357 kb on - strand, within ABZR87_RS03285 at 692.416 kb on + strand at 692.417 kb on - strand at 692.417 kb on - strand at 692.417 kb on - strand at 692.505 kb on + strand at 692.655 kb on + strand at 692.655 kb on + strand at 692.655 kb on + strand at 692.655 kb on + strand at 692.655 kb on + strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.656 kb on - strand at 692.733 kb on + strand at 692.733 kb on + strand at 692.733 kb on + strand at 692.733 kb on + strand at 692.733 kb on + strand at 692.734 kb on - strand at 692.734 kb on - strand at 692.734 kb on - strand at 692.734 kb on - strand at 692.734 kb on - strand at 692.734 kb on - strand at 692.753 kb on + strand at 692.754 kb on - strand at 692.799 kb on + strand at 692.799 kb on + strand at 692.800 kb on - strand at 692.832 kb on + strand, within ABZR87_RS03290 at 692.832 kb on + strand, within ABZR87_RS03290 at 692.943 kb on + strand, within ABZR87_RS03290 at 692.943 kb on + strand, within ABZR87_RS03290 at 692.943 kb on + strand, within ABZR87_RS03290 at 692.944 kb on - strand, within ABZR87_RS03290 at 692.944 kb on - strand, within ABZR87_RS03290 at 692.944 kb on - strand, within ABZR87_RS03290 at 692.944 kb on - strand, within ABZR87_RS03290 at 692.944 kb on - strand, within ABZR87_RS03290 at 693.375 kb on - strand, within ABZR87_RS03290 at 693.375 kb on - strand, within ABZR87_RS03290 at 693.393 kb on + strand, within ABZR87_RS03290 at 693.393 kb on + strand, within ABZR87_RS03290 at 693.393 kb on + strand, within ABZR87_RS03290 at 693.394 kb on - strand, within ABZR87_RS03290 at 693.394 kb on - strand, within ABZR87_RS03290 at 693.394 kb on - strand, within ABZR87_RS03290 at 693.394 kb on - strand, within ABZR87_RS03290
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 691,186 + ABZR87_RS03280 0.58 +0.0 691,186 + ABZR87_RS03280 0.58 -0.7 691,186 + ABZR87_RS03280 0.58 -1.7 691,186 + ABZR87_RS03280 0.58 +1.5 691,187 - ABZR87_RS03280 0.59 +0.1 691,187 - ABZR87_RS03280 0.59 -0.4 691,187 - ABZR87_RS03280 0.59 -2.2 691,225 + ABZR87_RS03280 0.62 +0.8 691,225 + ABZR87_RS03280 0.62 +1.7 691,225 + ABZR87_RS03280 0.62 -1.5 691,226 - ABZR87_RS03280 0.62 -1.1 691,226 - ABZR87_RS03280 0.62 +1.5 691,228 + ABZR87_RS03280 0.62 -1.2 691,228 + ABZR87_RS03280 0.62 -0.5 691,228 + ABZR87_RS03280 0.62 +1.6 691,228 + ABZR87_RS03280 0.62 -0.0 691,228 + ABZR87_RS03280 0.62 -1.2 691,228 + ABZR87_RS03280 0.62 -1.6 691,228 + ABZR87_RS03280 0.62 -1.1 691,228 + ABZR87_RS03280 0.62 +0.0 691,228 + ABZR87_RS03280 0.62 +0.2 691,228 + ABZR87_RS03280 0.62 -1.0 691,229 - ABZR87_RS03280 0.62 +1.5 691,229 - ABZR87_RS03280 0.62 +0.5 691,229 - ABZR87_RS03280 0.62 +0.4 691,229 - ABZR87_RS03280 0.62 -0.6 691,229 - ABZR87_RS03280 0.62 +0.3 691,229 - ABZR87_RS03280 0.62 -0.2 691,229 - ABZR87_RS03280 0.62 +1.0 691,249 + ABZR87_RS03280 0.64 +0.8 691,249 + ABZR87_RS03280 0.64 -0.6 691,249 + ABZR87_RS03280 0.64 +1.4 691,249 + ABZR87_RS03280 0.64 -0.2 691,249 + ABZR87_RS03280 0.64 +1.0 691,249 + ABZR87_RS03280 0.64 -1.6 691,250 - ABZR87_RS03280 0.64 -1.3 691,250 - ABZR87_RS03280 0.64 -1.2 691,250 - ABZR87_RS03280 0.64 +1.1 691,253 + ABZR87_RS03280 0.64 -1.2 691,253 + ABZR87_RS03280 0.64 +0.1 691,253 + ABZR87_RS03280 0.64 +1.6 691,253 + ABZR87_RS03280 0.64 +0.4 691,253 + ABZR87_RS03280 0.64 -0.5 691,303 + ABZR87_RS03280 0.69 -1.4 691,303 + ABZR87_RS03280 0.69 -0.1 691,303 + ABZR87_RS03280 0.69 +0.3 691,303 + ABZR87_RS03280 0.69 -0.6 691,304 - ABZR87_RS03280 0.69 -0.1 691,304 - ABZR87_RS03280 0.69 -2.5 691,304 - ABZR87_RS03280 0.69 +1.3 691,304 - ABZR87_RS03280 0.69 -1.5 691,304 - ABZR87_RS03280 0.69 -2.2 691,304 - ABZR87_RS03280 0.69 -1.0 691,304 - ABZR87_RS03280 0.69 -1.6 691,376 + ABZR87_RS03280 0.75 -0.1 691,549 + -0.6 691,549 + -0.1 691,549 + +0.1 691,549 + +2.0 691,549 + -0.4 691,549 + +2.1 691,549 + -0.3 691,549 + -1.9 691,550 - +0.0 691,550 - -0.7 691,550 - -0.4 691,550 - -0.7 691,550 - -0.1 691,550 - -0.4 691,550 - -2.1 691,550 - +0.2 691,550 - -0.2 691,550 - -0.2 691,550 - -0.4 691,571 + +2.8 691,571 + -0.4 691,571 + +0.2 691,572 - +0.7 691,572 - -1.6 691,572 - -0.8 691,576 + -2.1 691,576 + +0.5 691,576 + +0.2 691,576 + -1.0 691,577 - +0.1 691,600 + +1.8 691,601 - -1.1 691,601 - +1.2 691,601 - +0.1 691,601 - -0.5 691,665 + +0.6 691,666 - +0.6 691,668 + -0.1 691,668 + -0.3 691,669 - +1.9 691,729 + -1.8 691,729 + -1.0 691,730 - +0.5 691,773 + -1.7 691,774 - +0.4 691,774 - +0.2 691,806 - -0.3 691,806 - -0.5 691,806 - -0.1 691,817 + -0.3 691,817 + -0.1 691,817 + -1.9 691,834 + +1.0 691,835 - +0.2 691,857 + +1.4 691,857 + -1.4 691,857 + -2.3 691,857 + +2.2 691,857 + +0.5 691,858 - -1.9 691,858 - +0.6 691,858 - -0.9 691,936 + +2.7 691,936 + -0.1 691,970 - +0.7 691,970 - +0.2 692,058 - -0.2 692,061 + -2.0 692,062 + +1.6 692,062 + +0.1 692,062 + +1.5 692,062 + -0.4 692,062 + +0.3 692,062 + -0.1 692,062 + -0.6 692,062 + -1.2 692,062 + +1.9 692,062 + +1.8 692,062 + -0.9 692,062 + +1.2 692,062 + +0.8 692,062 + -0.2 692,062 + -0.2 692,062 + +0.5 692,062 + +1.1 692,062 + +1.0 692,062 + +1.0 692,062 + +0.1 692,062 + +0.5 692,063 - +1.1 692,063 - -0.5 692,063 - +2.0 692,063 - -1.5 692,063 - +0.8 692,063 - +0.0 692,063 - -0.0 692,063 - -0.2 692,063 - +0.4 692,063 - -0.4 692,063 - +3.4 692,063 - -0.3 692,063 - -0.8 692,063 - -1.7 692,063 - -0.8 692,063 - +1.0 692,063 - -0.3 692,063 - -0.4 692,063 - -0.4 692,063 - +0.1 692,063 - -0.8 692,063 - -1.4 692,076 + -0.3 692,076 + -1.9 692,076 + -0.4 692,076 + -0.7 692,076 + -0.5 692,076 + +1.8 692,077 - +0.3 692,077 - -2.1 692,077 - -0.2 692,077 - +2.2 692,077 - +0.7 692,077 - +0.2 692,077 - +0.1 692,077 - +1.1 692,083 + -1.6 692,083 + -0.2 692,084 - -2.3 692,084 - +0.3 692,084 - +1.8 692,084 - +1.5 692,084 - +0.9 692,116 - +0.1 692,284 + ABZR87_RS03285 0.45 -0.7 692,284 + ABZR87_RS03285 0.45 +1.0 692,284 + ABZR87_RS03285 0.45 -0.5 692,284 + ABZR87_RS03285 0.45 +0.9 692,285 - ABZR87_RS03285 0.46 -1.1 692,316 + ABZR87_RS03285 0.56 +0.9 692,316 + ABZR87_RS03285 0.56 -0.7 692,316 + ABZR87_RS03285 0.56 -1.5 692,317 - ABZR87_RS03285 0.57 -0.8 692,317 - ABZR87_RS03285 0.57 -0.3 692,317 - ABZR87_RS03285 0.57 -0.7 692,317 - ABZR87_RS03285 0.57 +1.9 692,317 - ABZR87_RS03285 0.57 +1.3 692,320 + ABZR87_RS03285 0.58 +0.3 692,320 + ABZR87_RS03285 0.58 +1.1 692,320 + ABZR87_RS03285 0.58 -0.7 692,320 + ABZR87_RS03285 0.58 -0.7 692,320 + ABZR87_RS03285 0.58 +1.5 692,320 + ABZR87_RS03285 0.58 -0.3 692,320 + ABZR87_RS03285 0.58 +1.0 692,320 + ABZR87_RS03285 0.58 -1.1 692,320 + ABZR87_RS03285 0.58 +0.1 692,320 + ABZR87_RS03285 0.58 -0.8 692,320 + ABZR87_RS03285 0.58 -0.1 692,321 - ABZR87_RS03285 0.58 -1.6 692,321 - ABZR87_RS03285 0.58 -0.9 692,321 - ABZR87_RS03285 0.58 -0.7 692,321 - ABZR87_RS03285 0.58 +1.5 692,321 - ABZR87_RS03285 0.58 -0.3 692,321 - ABZR87_RS03285 0.58 +0.8 692,321 - ABZR87_RS03285 0.58 +1.0 692,321 - ABZR87_RS03285 0.58 +0.3 692,321 - ABZR87_RS03285 0.58 +1.6 692,321 - ABZR87_RS03285 0.58 -0.1 692,321 - ABZR87_RS03285 0.58 -1.4 692,321 - ABZR87_RS03285 0.58 -1.6 692,321 - ABZR87_RS03285 0.58 -0.4 692,321 - ABZR87_RS03285 0.58 +1.7 692,321 - ABZR87_RS03285 0.58 +1.1 692,322 + ABZR87_RS03285 0.59 +1.0 692,323 - ABZR87_RS03285 0.59 -0.4 692,323 - ABZR87_RS03285 0.59 -0.2 692,323 - ABZR87_RS03285 0.59 +2.8 692,323 - ABZR87_RS03285 0.59 -0.1 692,323 - ABZR87_RS03285 0.59 +0.0 692,357 - ABZR87_RS03285 0.71 +0.9 692,416 + +0.1 692,417 - +0.7 692,417 - -0.5 692,417 - +1.6 692,505 + +0.1 692,655 + +0.3 692,655 + +0.2 692,655 + -0.7 692,655 + +0.4 692,655 + -0.2 692,656 - +1.7 692,656 - +0.6 692,656 - +0.1 692,656 - -1.7 692,656 - -0.1 692,656 - -1.3 692,656 - +0.6 692,656 - -0.3 692,656 - -1.6 692,656 - -0.4 692,733 + +0.8 692,733 + +0.3 692,733 + -1.6 692,733 + +0.1 692,733 + -1.0 692,734 - +0.6 692,734 - +0.9 692,734 - -0.5 692,734 - -0.8 692,734 - +0.7 692,734 - -0.3 692,753 + +0.8 692,754 - -0.5 692,799 + +0.3 692,799 + -0.5 692,800 - +0.1 692,832 + ABZR87_RS03290 0.11 -1.9 692,832 + ABZR87_RS03290 0.11 +0.2 692,943 + ABZR87_RS03290 0.16 -1.0 692,943 + ABZR87_RS03290 0.16 +0.3 692,943 + ABZR87_RS03290 0.16 +0.6 692,944 - ABZR87_RS03290 0.16 -1.0 692,944 - ABZR87_RS03290 0.16 -0.8 692,944 - ABZR87_RS03290 0.16 -1.7 692,944 - ABZR87_RS03290 0.16 -0.5 692,944 - ABZR87_RS03290 0.16 -0.7 693,375 - ABZR87_RS03290 0.35 -0.0 693,375 - ABZR87_RS03290 0.35 -0.6 693,393 + ABZR87_RS03290 0.36 +1.5 693,393 + ABZR87_RS03290 0.36 +1.7 693,393 + ABZR87_RS03290 0.36 -0.1 693,394 - ABZR87_RS03290 0.36 +0.2 693,394 - ABZR87_RS03290 0.36 -1.1 693,394 - ABZR87_RS03290 0.36 -0.8 693,394 - ABZR87_RS03290 0.36 +0.3
Or see this region's nucleotide sequence