Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02265 and ABZR87_RS02270 are separated by 19 nucleotides ABZR87_RS02270 and ABZR87_RS02275 are separated by 22 nucleotides ABZR87_RS02275 and ABZR87_RS02280 are separated by 121 nucleotides
ABZR87_RS02265: ABZR87_RS02265 - Grx4 family monothiol glutaredoxin, at 485,970 to 486,281
_RS02265
ABZR87_RS02270: ABZR87_RS02270 - UbiX family flavin prenyltransferase, at 486,301 to 486,924
_RS02270
ABZR87_RS02275: ABZR87_RS02275 - hypothetical protein, at 486,947 to 487,117
_RS02275
ABZR87_RS02280: ABZR87_RS02280 - hypothetical protein, at 487,239 to 487,979
_RS02280
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 486.165 kb on + strand, within ABZR87_RS02265 at 486.165 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.195 kb on + strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.196 kb on - strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.197 kb on + strand, within ABZR87_RS02265 at 486.243 kb on + strand, within ABZR87_RS02265 at 486.243 kb on + strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.244 kb on - strand, within ABZR87_RS02265 at 486.923 kb on - strand at 486.923 kb on - strand at 486.960 kb on + strand at 486.960 kb on + strand at 486.961 kb on - strand at 486.961 kb on - strand at 486.961 kb on - strand at 486.969 kb on + strand, within ABZR87_RS02275 at 486.969 kb on + strand, within ABZR87_RS02275 at 486.969 kb on + strand, within ABZR87_RS02275 at 486.969 kb on + strand, within ABZR87_RS02275 at 486.970 kb on - strand, within ABZR87_RS02275 at 486.970 kb on - strand, within ABZR87_RS02275 at 486.970 kb on - strand, within ABZR87_RS02275 at 486.991 kb on - strand, within ABZR87_RS02275 at 486.999 kb on + strand, within ABZR87_RS02275 at 487.002 kb on + strand, within ABZR87_RS02275 at 487.002 kb on + strand, within ABZR87_RS02275 at 487.003 kb on - strand, within ABZR87_RS02275 at 487.003 kb on - strand, within ABZR87_RS02275 at 487.026 kb on + strand, within ABZR87_RS02275 at 487.026 kb on + strand, within ABZR87_RS02275 at 487.026 kb on + strand, within ABZR87_RS02275 at 487.027 kb on - strand, within ABZR87_RS02275 at 487.027 kb on - strand, within ABZR87_RS02275 at 487.121 kb on + strand at 487.121 kb on + strand at 487.122 kb on - strand at 487.122 kb on - strand at 487.122 kb on - strand at 487.122 kb on - strand at 487.122 kb on - strand at 487.160 kb on + strand at 487.160 kb on + strand at 487.160 kb on + strand at 487.160 kb on + strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.161 kb on - strand at 487.162 kb on + strand at 487.162 kb on + strand at 487.162 kb on + strand at 487.162 kb on + strand at 487.162 kb on + strand at 487.162 kb on + strand at 487.162 kb on + strand at 487.163 kb on - strand at 487.163 kb on - strand at 487.163 kb on - strand at 487.163 kb on - strand at 487.163 kb on - strand at 487.198 kb on + strand at 487.198 kb on + strand at 487.199 kb on - strand at 487.199 kb on - strand at 487.207 kb on + strand at 487.208 kb on - strand at 487.218 kb on + strand at 487.219 kb on - strand at 487.234 kb on + strand at 487.234 kb on + strand at 487.235 kb on - strand at 487.235 kb on - strand at 487.235 kb on - strand at 487.235 kb on - strand at 487.235 kb on - strand at 487.247 kb on + strand at 487.247 kb on + strand at 487.248 kb on - strand at 487.248 kb on - strand at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.432 kb on + strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.433 kb on - strand, within ABZR87_RS02280 at 487.732 kb on + strand, within ABZR87_RS02280 at 487.733 kb on - strand, within ABZR87_RS02280 at 487.764 kb on + strand, within ABZR87_RS02280 at 487.764 kb on + strand, within ABZR87_RS02280 at 487.764 kb on + strand, within ABZR87_RS02280 at 487.765 kb on - strand, within ABZR87_RS02280 at 488.113 kb on + strand at 488.113 kb on + strand at 488.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 486,165 + ABZR87_RS02265 0.62 +1.1 486,165 + ABZR87_RS02265 0.62 -1.0 486,195 + ABZR87_RS02265 0.72 -0.9 486,195 + ABZR87_RS02265 0.72 +1.4 486,195 + ABZR87_RS02265 0.72 -0.8 486,195 + ABZR87_RS02265 0.72 +0.1 486,195 + ABZR87_RS02265 0.72 -2.1 486,195 + ABZR87_RS02265 0.72 -0.1 486,195 + ABZR87_RS02265 0.72 +1.8 486,195 + ABZR87_RS02265 0.72 -2.0 486,195 + ABZR87_RS02265 0.72 +1.3 486,195 + ABZR87_RS02265 0.72 +0.8 486,195 + ABZR87_RS02265 0.72 -1.3 486,196 - ABZR87_RS02265 0.72 +0.1 486,196 - ABZR87_RS02265 0.72 -0.6 486,196 - ABZR87_RS02265 0.72 -0.4 486,196 - ABZR87_RS02265 0.72 +0.1 486,196 - ABZR87_RS02265 0.72 +1.7 486,196 - ABZR87_RS02265 0.72 +2.7 486,196 - ABZR87_RS02265 0.72 -0.8 486,197 + ABZR87_RS02265 0.73 -0.9 486,197 + ABZR87_RS02265 0.73 +2.6 486,197 + ABZR87_RS02265 0.73 -1.5 486,197 + ABZR87_RS02265 0.73 -1.2 486,243 + ABZR87_RS02265 0.88 -0.7 486,243 + ABZR87_RS02265 0.88 -0.9 486,244 - ABZR87_RS02265 0.88 -1.4 486,244 - ABZR87_RS02265 0.88 +2.7 486,244 - ABZR87_RS02265 0.88 -0.1 486,244 - ABZR87_RS02265 0.88 +0.9 486,244 - ABZR87_RS02265 0.88 -0.2 486,923 - +0.7 486,923 - +1.3 486,960 + +0.8 486,960 + -0.9 486,961 - +1.1 486,961 - +0.6 486,961 - -0.1 486,969 + ABZR87_RS02275 0.13 +1.0 486,969 + ABZR87_RS02275 0.13 +1.7 486,969 + ABZR87_RS02275 0.13 +2.1 486,969 + ABZR87_RS02275 0.13 -0.7 486,970 - ABZR87_RS02275 0.13 +0.9 486,970 - ABZR87_RS02275 0.13 -0.6 486,970 - ABZR87_RS02275 0.13 -0.1 486,991 - ABZR87_RS02275 0.26 +1.9 486,999 + ABZR87_RS02275 0.30 +0.5 487,002 + ABZR87_RS02275 0.32 -0.2 487,002 + ABZR87_RS02275 0.32 -0.9 487,003 - ABZR87_RS02275 0.33 -0.3 487,003 - ABZR87_RS02275 0.33 -0.7 487,026 + ABZR87_RS02275 0.46 -0.7 487,026 + ABZR87_RS02275 0.46 +1.1 487,026 + ABZR87_RS02275 0.46 -1.2 487,027 - ABZR87_RS02275 0.47 +1.1 487,027 - ABZR87_RS02275 0.47 -1.4 487,121 + -1.8 487,121 + +4.1 487,122 - +0.5 487,122 - -0.2 487,122 - +0.6 487,122 - -0.0 487,122 - -0.0 487,160 + -0.8 487,160 + -0.8 487,160 + -1.1 487,160 + -0.2 487,161 - -0.2 487,161 - -0.5 487,161 - -0.7 487,161 - +0.6 487,161 - -0.1 487,161 - +2.4 487,161 - +0.6 487,161 - +0.5 487,161 - +1.0 487,161 - +1.5 487,162 + +1.2 487,162 + +0.5 487,162 + +1.1 487,162 + +2.6 487,162 + +1.0 487,162 + -0.6 487,162 + -0.4 487,163 - -0.4 487,163 - +0.1 487,163 - +0.6 487,163 - +1.7 487,163 - +1.1 487,198 + +2.1 487,198 + -0.9 487,199 - +0.3 487,199 - -1.8 487,207 + -1.2 487,208 - -2.9 487,218 + +2.4 487,219 - -0.0 487,234 + +0.8 487,234 + +0.0 487,235 - +0.5 487,235 - +0.8 487,235 - -1.7 487,235 - -1.4 487,235 - +1.2 487,247 + +0.8 487,247 + -1.1 487,248 - -1.2 487,248 - -1.3 487,432 + ABZR87_RS02280 0.26 -0.9 487,432 + ABZR87_RS02280 0.26 +1.1 487,432 + ABZR87_RS02280 0.26 +1.0 487,432 + ABZR87_RS02280 0.26 -1.0 487,432 + ABZR87_RS02280 0.26 -2.6 487,432 + ABZR87_RS02280 0.26 -0.9 487,432 + ABZR87_RS02280 0.26 +1.3 487,432 + ABZR87_RS02280 0.26 -0.2 487,432 + ABZR87_RS02280 0.26 +0.4 487,432 + ABZR87_RS02280 0.26 +2.8 487,432 + ABZR87_RS02280 0.26 +0.1 487,432 + ABZR87_RS02280 0.26 +0.1 487,432 + ABZR87_RS02280 0.26 +0.4 487,432 + ABZR87_RS02280 0.26 -1.9 487,432 + ABZR87_RS02280 0.26 -0.6 487,433 - ABZR87_RS02280 0.26 +0.2 487,433 - ABZR87_RS02280 0.26 -1.5 487,433 - ABZR87_RS02280 0.26 +0.9 487,433 - ABZR87_RS02280 0.26 +0.2 487,433 - ABZR87_RS02280 0.26 -2.1 487,433 - ABZR87_RS02280 0.26 -1.2 487,433 - ABZR87_RS02280 0.26 +0.3 487,732 + ABZR87_RS02280 0.67 -0.4 487,733 - ABZR87_RS02280 0.67 +2.8 487,764 + ABZR87_RS02280 0.71 -1.0 487,764 + ABZR87_RS02280 0.71 -0.1 487,764 + ABZR87_RS02280 0.71 -1.5 487,765 - ABZR87_RS02280 0.71 +0.2 488,113 + -2.2 488,113 + -0.1 488,114 - +2.0
Or see this region's nucleotide sequence