Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02115 and ABZR87_RS02120 are separated by 74 nucleotides ABZR87_RS02120 and ABZR87_RS02125 are separated by 6 nucleotides ABZR87_RS02125 and ABZR87_RS02130 are separated by 130 nucleotides
ABZR87_RS02115: ABZR87_RS02115 - murein transglycosylase A, at 455,298 to 456,452
_RS02115
ABZR87_RS02120: ABZR87_RS02120 - hypothetical protein, at 456,527 to 456,760
_RS02120
ABZR87_RS02125: ABZR87_RS02125 - Co2+/Mg2+ efflux protein ApaG, at 456,767 to 457,141
_RS02125
ABZR87_RS02130: ABZR87_RS02130 - ribulose-phosphate 3-epimerase, at 457,272 to 458,000
_RS02130
Position (kb) 456
457 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.533 kb on + strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.534 kb on - strand, within ABZR87_RS02115 at 455.632 kb on + strand, within ABZR87_RS02115 at 455.632 kb on + strand, within ABZR87_RS02115 at 455.633 kb on - strand, within ABZR87_RS02115 at 455.633 kb on - strand, within ABZR87_RS02115 at 455.724 kb on - strand, within ABZR87_RS02115 at 455.968 kb on + strand, within ABZR87_RS02115 at 455.968 kb on + strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 455.984 kb on - strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.025 kb on + strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.026 kb on - strand, within ABZR87_RS02115 at 456.029 kb on - strand, within ABZR87_RS02115 at 456.029 kb on - strand, within ABZR87_RS02115 at 456.260 kb on + strand, within ABZR87_RS02115 at 456.261 kb on - strand, within ABZR87_RS02115 at 456.491 kb on + strand at 456.491 kb on + strand at 456.491 kb on + strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.492 kb on - strand at 456.849 kb on + strand, within ABZR87_RS02125 at 456.849 kb on + strand, within ABZR87_RS02125 at 456.850 kb on - strand, within ABZR87_RS02125 at 456.850 kb on - strand, within ABZR87_RS02125 at 456.866 kb on - strand, within ABZR87_RS02125 at 456.866 kb on - strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.900 kb on + strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.901 kb on - strand, within ABZR87_RS02125 at 456.988 kb on + strand, within ABZR87_RS02125 at 456.988 kb on + strand, within ABZR87_RS02125 at 456.989 kb on - strand, within ABZR87_RS02125 at 456.989 kb on - strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.053 kb on + strand, within ABZR87_RS02125 at 457.054 kb on - strand, within ABZR87_RS02125 at 457.054 kb on - strand, within ABZR87_RS02125 at 457.065 kb on + strand, within ABZR87_RS02125 at 457.065 kb on + strand, within ABZR87_RS02125 at 457.066 kb on - strand, within ABZR87_RS02125 at 457.102 kb on - strand, within ABZR87_RS02125 at 457.102 kb on - strand, within ABZR87_RS02125 at 457.131 kb on + strand at 457.132 kb on - strand at 457.132 kb on - strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.154 kb on + strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.155 kb on - strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.227 kb on + strand at 457.228 kb on - strand at 457.228 kb on - strand at 457.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 455,533 + ABZR87_RS02115 0.20 -1.0 455,533 + ABZR87_RS02115 0.20 -0.5 455,533 + ABZR87_RS02115 0.20 -0.0 455,533 + ABZR87_RS02115 0.20 -0.6 455,533 + ABZR87_RS02115 0.20 +1.3 455,533 + ABZR87_RS02115 0.20 +0.1 455,533 + ABZR87_RS02115 0.20 -1.8 455,534 - ABZR87_RS02115 0.20 +0.2 455,534 - ABZR87_RS02115 0.20 +0.7 455,534 - ABZR87_RS02115 0.20 -0.4 455,534 - ABZR87_RS02115 0.20 -0.9 455,632 + ABZR87_RS02115 0.29 +1.2 455,632 + ABZR87_RS02115 0.29 +1.2 455,633 - ABZR87_RS02115 0.29 +0.7 455,633 - ABZR87_RS02115 0.29 +1.1 455,724 - ABZR87_RS02115 0.37 +0.1 455,968 + ABZR87_RS02115 0.58 +1.7 455,968 + ABZR87_RS02115 0.58 -1.4 455,984 - ABZR87_RS02115 0.59 -0.2 455,984 - ABZR87_RS02115 0.59 +0.6 455,984 - ABZR87_RS02115 0.59 +0.3 455,984 - ABZR87_RS02115 0.59 +2.5 456,025 + ABZR87_RS02115 0.63 -0.9 456,025 + ABZR87_RS02115 0.63 -0.7 456,025 + ABZR87_RS02115 0.63 +1.2 456,025 + ABZR87_RS02115 0.63 +0.9 456,025 + ABZR87_RS02115 0.63 +2.3 456,025 + ABZR87_RS02115 0.63 +0.9 456,026 - ABZR87_RS02115 0.63 -0.1 456,026 - ABZR87_RS02115 0.63 +0.0 456,026 - ABZR87_RS02115 0.63 +1.1 456,026 - ABZR87_RS02115 0.63 +0.4 456,026 - ABZR87_RS02115 0.63 +0.0 456,029 - ABZR87_RS02115 0.63 +0.7 456,029 - ABZR87_RS02115 0.63 +1.2 456,260 + ABZR87_RS02115 0.83 -0.5 456,261 - ABZR87_RS02115 0.83 -0.8 456,491 + +0.7 456,491 + -0.7 456,491 + -0.3 456,492 - +0.6 456,492 - +1.2 456,492 - -1.0 456,492 - +0.2 456,492 - -0.2 456,492 - +0.7 456,849 + ABZR87_RS02125 0.22 -1.1 456,849 + ABZR87_RS02125 0.22 +0.7 456,850 - ABZR87_RS02125 0.22 +0.3 456,850 - ABZR87_RS02125 0.22 +0.5 456,866 - ABZR87_RS02125 0.26 -1.6 456,866 - ABZR87_RS02125 0.26 -2.2 456,900 + ABZR87_RS02125 0.35 +0.3 456,900 + ABZR87_RS02125 0.35 +4.3 456,900 + ABZR87_RS02125 0.35 +1.1 456,900 + ABZR87_RS02125 0.35 +0.2 456,900 + ABZR87_RS02125 0.35 -0.2 456,901 - ABZR87_RS02125 0.36 -2.2 456,901 - ABZR87_RS02125 0.36 -0.5 456,901 - ABZR87_RS02125 0.36 +1.0 456,901 - ABZR87_RS02125 0.36 +1.6 456,988 + ABZR87_RS02125 0.59 +0.4 456,988 + ABZR87_RS02125 0.59 +1.7 456,989 - ABZR87_RS02125 0.59 -0.2 456,989 - ABZR87_RS02125 0.59 -0.6 457,053 + ABZR87_RS02125 0.76 -0.0 457,053 + ABZR87_RS02125 0.76 -0.1 457,053 + ABZR87_RS02125 0.76 -1.9 457,053 + ABZR87_RS02125 0.76 +0.3 457,054 - ABZR87_RS02125 0.77 +1.5 457,054 - ABZR87_RS02125 0.77 +0.8 457,065 + ABZR87_RS02125 0.79 +0.7 457,065 + ABZR87_RS02125 0.79 -0.6 457,066 - ABZR87_RS02125 0.80 +0.3 457,102 - ABZR87_RS02125 0.89 -1.5 457,102 - ABZR87_RS02125 0.89 +0.4 457,131 + -1.4 457,132 - -1.6 457,132 - +1.9 457,154 + +0.9 457,154 + -0.4 457,154 + -1.2 457,154 + +1.5 457,155 - -0.4 457,155 - +1.4 457,155 - +0.2 457,155 - -0.3 457,227 + +3.2 457,227 + +0.4 457,227 + -1.1 457,227 + +3.8 457,228 - +0.9 457,228 - +2.7 457,228 - +3.2
Or see this region's nucleotide sequence