Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02095 and ABZR87_RS02100 are separated by 83 nucleotides ABZR87_RS02100 and ABZR87_RS02105 are separated by 4 nucleotides ABZR87_RS02105 and ABZR87_RS02110 are separated by 204 nucleotides
ABZR87_RS02095: ABZR87_RS02095 - enoyl-CoA hydratase, at 451,652 to 452,428
_RS02095
ABZR87_RS02100: ABZR87_RS02100 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG, at 452,512 to 453,300
_RS02100
ABZR87_RS02105: ABZR87_RS02105 - hydroxyphenylacetyl-CoA thioesterase PaaI, at 453,305 to 453,772
_RS02105
ABZR87_RS02110: ABZR87_RS02110 - phenylacetate--CoA ligase PaaK, at 453,977 to 455,281
_RS02110
Position (kb) 453
454 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 452.377 kb on + strand at 452.377 kb on + strand at 452.377 kb on + strand at 452.378 kb on - strand at 452.378 kb on - strand at 452.378 kb on - strand at 452.422 kb on - strand at 452.422 kb on - strand at 452.452 kb on + strand at 452.452 kb on + strand at 452.918 kb on + strand, within ABZR87_RS02100 at 452.918 kb on + strand, within ABZR87_RS02100 at 452.918 kb on + strand, within ABZR87_RS02100 at 452.919 kb on - strand, within ABZR87_RS02100 at 452.919 kb on - strand, within ABZR87_RS02100 at 452.919 kb on - strand, within ABZR87_RS02100 at 453.241 kb on + strand at 453.278 kb on + strand at 453.278 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.431 kb on + strand, within ABZR87_RS02105 at 453.432 kb on - strand, within ABZR87_RS02105 at 453.432 kb on - strand, within ABZR87_RS02105 at 453.548 kb on - strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.662 kb on + strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.663 kb on - strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.669 kb on + strand, within ABZR87_RS02105 at 453.670 kb on - strand, within ABZR87_RS02105 at 453.681 kb on - strand, within ABZR87_RS02105 at 453.771 kb on - strand at 453.785 kb on - strand at 453.785 kb on - strand at 453.785 kb on - strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.786 kb on + strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.787 kb on - strand at 453.816 kb on + strand at 453.816 kb on + strand at 453.817 kb on - strand at 453.817 kb on - strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.886 kb on + strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.887 kb on - strand at 453.894 kb on + strand at 453.895 kb on - strand at 453.932 kb on + strand at 453.932 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.085 kb on + strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.086 kb on - strand at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.208 kb on + strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.209 kb on - strand, within ABZR87_RS02110 at 454.299 kb on - strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.318 kb on + strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.319 kb on - strand, within ABZR87_RS02110 at 454.391 kb on + strand, within ABZR87_RS02110 at 454.392 kb on - strand, within ABZR87_RS02110 at 454.392 kb on - strand, within ABZR87_RS02110 at 454.397 kb on + strand, within ABZR87_RS02110 at 454.398 kb on - strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.544 kb on + strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.545 kb on - strand, within ABZR87_RS02110 at 454.690 kb on + strand, within ABZR87_RS02110 at 454.690 kb on + strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.691 kb on - strand, within ABZR87_RS02110 at 454.694 kb on + strand, within ABZR87_RS02110 at 454.694 kb on + strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110 at 454.695 kb on - strand, within ABZR87_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 452,377 + -1.5 452,377 + -1.5 452,377 + +6.9 452,378 - +0.6 452,378 - -0.4 452,378 - -0.3 452,422 - -0.2 452,422 - +0.4 452,452 + +0.8 452,452 + +0.3 452,918 + ABZR87_RS02100 0.51 -2.3 452,918 + ABZR87_RS02100 0.51 +0.4 452,918 + ABZR87_RS02100 0.51 +1.8 452,919 - ABZR87_RS02100 0.52 -2.3 452,919 - ABZR87_RS02100 0.52 -1.0 452,919 - ABZR87_RS02100 0.52 -0.4 453,241 + +1.1 453,278 + -0.1 453,278 + +0.8 453,298 + +0.8 453,298 + +0.3 453,298 + -0.9 453,298 + +1.7 453,299 - -0.8 453,299 - -0.3 453,299 - +1.0 453,299 - +0.6 453,431 + ABZR87_RS02105 0.27 +1.7 453,432 - ABZR87_RS02105 0.27 +0.1 453,432 - ABZR87_RS02105 0.27 +1.6 453,548 - ABZR87_RS02105 0.52 +0.5 453,662 + ABZR87_RS02105 0.76 -1.1 453,662 + ABZR87_RS02105 0.76 +0.0 453,662 + ABZR87_RS02105 0.76 -0.4 453,662 + ABZR87_RS02105 0.76 +1.5 453,662 + ABZR87_RS02105 0.76 +0.3 453,662 + ABZR87_RS02105 0.76 +0.8 453,663 - ABZR87_RS02105 0.76 +0.1 453,663 - ABZR87_RS02105 0.76 -0.4 453,663 - ABZR87_RS02105 0.76 -0.0 453,663 - ABZR87_RS02105 0.76 -0.5 453,663 - ABZR87_RS02105 0.76 -2.7 453,663 - ABZR87_RS02105 0.76 -0.6 453,663 - ABZR87_RS02105 0.76 -1.9 453,663 - ABZR87_RS02105 0.76 +0.3 453,669 + ABZR87_RS02105 0.78 +1.7 453,669 + ABZR87_RS02105 0.78 +0.8 453,669 + ABZR87_RS02105 0.78 -0.1 453,669 + ABZR87_RS02105 0.78 -0.7 453,669 + ABZR87_RS02105 0.78 +0.8 453,669 + ABZR87_RS02105 0.78 +0.6 453,670 - ABZR87_RS02105 0.78 -1.8 453,681 - ABZR87_RS02105 0.80 +0.3 453,771 - -1.4 453,785 - +1.8 453,785 - -0.2 453,785 - +1.1 453,786 + -0.7 453,786 + +0.0 453,786 + -0.1 453,786 + -0.7 453,786 + -0.6 453,786 + -0.7 453,786 + +0.8 453,786 + -0.4 453,786 + +1.4 453,786 + +0.3 453,786 + +0.3 453,786 + +0.0 453,786 + +1.4 453,787 - +0.8 453,787 - +0.1 453,787 - -2.0 453,787 - -1.6 453,787 - -0.5 453,787 - +1.0 453,816 + +0.3 453,816 + -0.9 453,817 - +0.2 453,817 - -0.4 453,886 + -1.2 453,886 + -0.6 453,886 + +0.0 453,886 + +0.7 453,886 + +0.1 453,886 + +0.4 453,886 + +1.2 453,886 + +1.4 453,886 + -0.9 453,886 + +0.0 453,886 + +0.3 453,886 + +0.1 453,886 + -0.3 453,886 + +0.4 453,886 + -1.5 453,886 + -0.9 453,886 + +1.7 453,886 + -1.1 453,886 + -0.8 453,887 - -0.6 453,887 - +1.0 453,887 - -0.2 453,887 - -0.4 453,887 - -0.2 453,887 - -1.9 453,887 - -1.2 453,887 - +0.7 453,887 - -0.6 453,887 - +0.5 453,887 - +2.1 453,887 - -0.2 453,887 - +0.3 453,887 - +0.3 453,887 - -0.8 453,887 - +0.1 453,887 - -0.4 453,887 - -1.4 453,894 + -1.2 453,895 - +1.0 453,932 + +0.8 453,932 + -0.8 454,085 + -0.4 454,085 + -1.4 454,085 + -0.7 454,085 + -2.4 454,085 + +0.2 454,085 + +0.7 454,085 + +1.1 454,086 - -0.7 454,086 - -0.1 454,086 - +1.4 454,086 - -0.8 454,086 - -1.1 454,208 + ABZR87_RS02110 0.18 -0.1 454,208 + ABZR87_RS02110 0.18 -0.1 454,208 + ABZR87_RS02110 0.18 -0.3 454,208 + ABZR87_RS02110 0.18 +3.7 454,208 + ABZR87_RS02110 0.18 -0.3 454,209 - ABZR87_RS02110 0.18 -0.8 454,209 - ABZR87_RS02110 0.18 +0.7 454,209 - ABZR87_RS02110 0.18 +0.5 454,209 - ABZR87_RS02110 0.18 +0.6 454,209 - ABZR87_RS02110 0.18 +0.0 454,299 - ABZR87_RS02110 0.25 +0.3 454,318 + ABZR87_RS02110 0.26 -0.6 454,318 + ABZR87_RS02110 0.26 +0.6 454,318 + ABZR87_RS02110 0.26 +1.0 454,318 + ABZR87_RS02110 0.26 -0.2 454,318 + ABZR87_RS02110 0.26 -0.0 454,318 + ABZR87_RS02110 0.26 -0.7 454,318 + ABZR87_RS02110 0.26 +0.7 454,318 + ABZR87_RS02110 0.26 -0.4 454,318 + ABZR87_RS02110 0.26 +1.1 454,318 + ABZR87_RS02110 0.26 -1.4 454,319 - ABZR87_RS02110 0.26 -0.3 454,319 - ABZR87_RS02110 0.26 -0.5 454,319 - ABZR87_RS02110 0.26 +1.4 454,319 - ABZR87_RS02110 0.26 +0.6 454,319 - ABZR87_RS02110 0.26 -0.5 454,319 - ABZR87_RS02110 0.26 -0.2 454,319 - ABZR87_RS02110 0.26 -1.1 454,391 + ABZR87_RS02110 0.32 -0.3 454,392 - ABZR87_RS02110 0.32 +0.6 454,392 - ABZR87_RS02110 0.32 +2.5 454,397 + ABZR87_RS02110 0.32 -0.0 454,398 - ABZR87_RS02110 0.32 +0.5 454,544 + ABZR87_RS02110 0.43 -1.6 454,544 + ABZR87_RS02110 0.43 +0.8 454,544 + ABZR87_RS02110 0.43 +1.3 454,544 + ABZR87_RS02110 0.43 +2.0 454,544 + ABZR87_RS02110 0.43 -0.6 454,544 + ABZR87_RS02110 0.43 -1.8 454,544 + ABZR87_RS02110 0.43 -0.7 454,544 + ABZR87_RS02110 0.43 -1.0 454,544 + ABZR87_RS02110 0.43 +0.6 454,545 - ABZR87_RS02110 0.44 +0.4 454,545 - ABZR87_RS02110 0.44 +1.6 454,545 - ABZR87_RS02110 0.44 +1.4 454,545 - ABZR87_RS02110 0.44 -1.0 454,545 - ABZR87_RS02110 0.44 -0.5 454,545 - ABZR87_RS02110 0.44 -0.8 454,545 - ABZR87_RS02110 0.44 -0.2 454,545 - ABZR87_RS02110 0.44 +1.3 454,545 - ABZR87_RS02110 0.44 +1.7 454,545 - ABZR87_RS02110 0.44 -0.6 454,690 + ABZR87_RS02110 0.55 +0.1 454,690 + ABZR87_RS02110 0.55 -1.4 454,691 - ABZR87_RS02110 0.55 +0.2 454,691 - ABZR87_RS02110 0.55 +0.4 454,691 - ABZR87_RS02110 0.55 -1.2 454,691 - ABZR87_RS02110 0.55 +2.4 454,691 - ABZR87_RS02110 0.55 -0.7 454,694 + ABZR87_RS02110 0.55 +0.2 454,694 + ABZR87_RS02110 0.55 -0.3 454,695 - ABZR87_RS02110 0.55 +2.3 454,695 - ABZR87_RS02110 0.55 -0.8 454,695 - ABZR87_RS02110 0.55 +0.8 454,695 - ABZR87_RS02110 0.55 +0.3 454,695 - ABZR87_RS02110 0.55 -1.0
Or see this region's nucleotide sequence