Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01150 and ABZR87_RS01155 are separated by 51 nucleotides ABZR87_RS01155 and ABZR87_RS01160 overlap by 4 nucleotides ABZR87_RS01160 and ABZR87_RS01165 are separated by 171 nucleotides
ABZR87_RS01150: ABZR87_RS01150 - glycolate oxidase subunit GlcF, at 239,542 to 240,786
_RS01150
ABZR87_RS01155: ABZR87_RS01155 - CidA/LrgA family protein, at 240,838 to 241,215
_RS01155
ABZR87_RS01160: ABZR87_RS01160 - LrgB family protein, at 241,212 to 241,943
_RS01160
ABZR87_RS01165: ABZR87_RS01165 - VOC family protein, at 242,115 to 242,510
_RS01165
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 240.086 kb on + strand, within ABZR87_RS01150 at 240.086 kb on + strand, within ABZR87_RS01150 at 240.086 kb on + strand, within ABZR87_RS01150 at 240.086 kb on + strand, within ABZR87_RS01150 at 240.086 kb on + strand, within ABZR87_RS01150 at 240.087 kb on - strand, within ABZR87_RS01150 at 240.196 kb on + strand, within ABZR87_RS01150 at 240.196 kb on + strand, within ABZR87_RS01150 at 240.328 kb on + strand, within ABZR87_RS01150 at 240.328 kb on + strand, within ABZR87_RS01150 at 240.358 kb on + strand, within ABZR87_RS01150 at 240.359 kb on - strand, within ABZR87_RS01150 at 240.607 kb on + strand, within ABZR87_RS01150 at 240.607 kb on + strand, within ABZR87_RS01150 at 240.607 kb on + strand, within ABZR87_RS01150 at 240.608 kb on - strand, within ABZR87_RS01150 at 240.608 kb on - strand, within ABZR87_RS01150 at 240.805 kb on + strand at 240.805 kb on + strand at 240.805 kb on + strand at 240.805 kb on + strand at 240.805 kb on + strand at 240.806 kb on - strand at 240.806 kb on - strand at 240.806 kb on - strand at 240.806 kb on - strand at 240.807 kb on + strand at 240.895 kb on + strand, within ABZR87_RS01155 at 240.895 kb on + strand, within ABZR87_RS01155 at 240.895 kb on + strand, within ABZR87_RS01155 at 240.895 kb on + strand, within ABZR87_RS01155 at 240.896 kb on - strand, within ABZR87_RS01155 at 240.952 kb on + strand, within ABZR87_RS01155 at 240.952 kb on + strand, within ABZR87_RS01155 at 240.952 kb on + strand, within ABZR87_RS01155 at 240.952 kb on + strand, within ABZR87_RS01155 at 240.952 kb on + strand, within ABZR87_RS01155 at 240.952 kb on + strand, within ABZR87_RS01155 at 240.953 kb on - strand, within ABZR87_RS01155 at 240.953 kb on - strand, within ABZR87_RS01155 at 240.953 kb on - strand, within ABZR87_RS01155 at 240.953 kb on - strand, within ABZR87_RS01155 at 241.115 kb on + strand, within ABZR87_RS01155 at 241.116 kb on - strand, within ABZR87_RS01155 at 241.116 kb on - strand, within ABZR87_RS01155 at 241.251 kb on + strand at 241.252 kb on - strand at 241.300 kb on - strand, within ABZR87_RS01160 at 241.410 kb on + strand, within ABZR87_RS01160 at 241.410 kb on + strand, within ABZR87_RS01160 at 241.410 kb on + strand, within ABZR87_RS01160 at 241.410 kb on + strand, within ABZR87_RS01160 at 241.411 kb on - strand, within ABZR87_RS01160 at 241.419 kb on + strand, within ABZR87_RS01160 at 241.419 kb on + strand, within ABZR87_RS01160 at 241.419 kb on + strand, within ABZR87_RS01160 at 241.419 kb on + strand, within ABZR87_RS01160 at 241.420 kb on - strand, within ABZR87_RS01160 at 241.420 kb on - strand, within ABZR87_RS01160 at 241.776 kb on + strand, within ABZR87_RS01160 at 241.776 kb on + strand, within ABZR87_RS01160 at 241.824 kb on - strand, within ABZR87_RS01160 at 241.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 240,086 + ABZR87_RS01150 0.44 -0.5 240,086 + ABZR87_RS01150 0.44 -0.0 240,086 + ABZR87_RS01150 0.44 -2.6 240,086 + ABZR87_RS01150 0.44 +1.1 240,086 + ABZR87_RS01150 0.44 +0.2 240,087 - ABZR87_RS01150 0.44 +0.6 240,196 + ABZR87_RS01150 0.53 -1.1 240,196 + ABZR87_RS01150 0.53 -1.4 240,328 + ABZR87_RS01150 0.63 -2.1 240,328 + ABZR87_RS01150 0.63 +0.4 240,358 + ABZR87_RS01150 0.66 -0.3 240,359 - ABZR87_RS01150 0.66 -0.9 240,607 + ABZR87_RS01150 0.86 -0.6 240,607 + ABZR87_RS01150 0.86 +0.2 240,607 + ABZR87_RS01150 0.86 +1.8 240,608 - ABZR87_RS01150 0.86 -0.2 240,608 - ABZR87_RS01150 0.86 -1.8 240,805 + -0.3 240,805 + -0.2 240,805 + +1.2 240,805 + -0.5 240,805 + +0.1 240,806 - +1.7 240,806 - -2.5 240,806 - -1.0 240,806 - +0.1 240,807 + -1.1 240,895 + ABZR87_RS01155 0.15 -0.5 240,895 + ABZR87_RS01155 0.15 +0.1 240,895 + ABZR87_RS01155 0.15 -0.7 240,895 + ABZR87_RS01155 0.15 +2.0 240,896 - ABZR87_RS01155 0.15 +0.2 240,952 + ABZR87_RS01155 0.30 -1.1 240,952 + ABZR87_RS01155 0.30 +0.2 240,952 + ABZR87_RS01155 0.30 +3.8 240,952 + ABZR87_RS01155 0.30 -1.0 240,952 + ABZR87_RS01155 0.30 +0.5 240,952 + ABZR87_RS01155 0.30 +0.5 240,953 - ABZR87_RS01155 0.30 +0.4 240,953 - ABZR87_RS01155 0.30 -1.3 240,953 - ABZR87_RS01155 0.30 -1.3 240,953 - ABZR87_RS01155 0.30 -0.7 241,115 + ABZR87_RS01155 0.73 -2.4 241,116 - ABZR87_RS01155 0.74 -0.9 241,116 - ABZR87_RS01155 0.74 +1.2 241,251 + +0.7 241,252 - +0.0 241,300 - ABZR87_RS01160 0.12 -0.8 241,410 + ABZR87_RS01160 0.27 -0.8 241,410 + ABZR87_RS01160 0.27 -0.8 241,410 + ABZR87_RS01160 0.27 -0.9 241,410 + ABZR87_RS01160 0.27 -1.1 241,411 - ABZR87_RS01160 0.27 -2.1 241,419 + ABZR87_RS01160 0.28 +0.2 241,419 + ABZR87_RS01160 0.28 -0.2 241,419 + ABZR87_RS01160 0.28 +0.7 241,419 + ABZR87_RS01160 0.28 +1.8 241,420 - ABZR87_RS01160 0.28 +0.5 241,420 - ABZR87_RS01160 0.28 -0.8 241,776 + ABZR87_RS01160 0.77 -0.9 241,776 + ABZR87_RS01160 0.77 +0.4 241,824 - ABZR87_RS01160 0.84 -0.9 241,970 + +1.4
Or see this region's nucleotide sequence