Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01105 and ABZR87_RS01110 are separated by 389 nucleotides ABZR87_RS01110 and ABZR87_RS01115 are separated by 170 nucleotides
ABZR87_RS01105: ABZR87_RS01105 - metalloprotease TldD, at 228,328 to 229,791
_RS01105
ABZR87_RS01110: ABZR87_RS01110 - 3-deoxy-7-phosphoheptulonate synthase AroG, at 230,181 to 231,260
_RS01110
ABZR87_RS01115: ABZR87_RS01115 - mechanosensitive ion channel family protein, at 231,431 to 232,333
_RS01115
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 229.339 kb on + strand, within ABZR87_RS01105 at 229.339 kb on + strand, within ABZR87_RS01105 at 229.340 kb on - strand, within ABZR87_RS01105 at 229.408 kb on + strand, within ABZR87_RS01105 at 229.408 kb on + strand, within ABZR87_RS01105 at 229.409 kb on - strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.444 kb on + strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.445 kb on - strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.504 kb on + strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.505 kb on - strand, within ABZR87_RS01105 at 229.576 kb on + strand, within ABZR87_RS01105 at 229.576 kb on + strand, within ABZR87_RS01105 at 229.577 kb on - strand, within ABZR87_RS01105 at 229.863 kb on + strand at 229.863 kb on + strand at 229.863 kb on + strand at 229.864 kb on - strand at 229.864 kb on - strand at 229.865 kb on + strand at 229.865 kb on + strand at 229.865 kb on + strand at 229.865 kb on + strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.866 kb on - strand at 229.894 kb on - strand at 229.894 kb on - strand at 229.977 kb on - strand at 229.977 kb on - strand at 230.031 kb on - strand at 230.137 kb on + strand at 230.137 kb on + strand at 230.137 kb on + strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.138 kb on - strand at 230.151 kb on - strand at 230.151 kb on - strand at 230.151 kb on - strand at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.289 kb on + strand, within ABZR87_RS01110 at 230.290 kb on - strand, within ABZR87_RS01110 at 230.290 kb on - strand, within ABZR87_RS01110 at 230.395 kb on - strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.460 kb on + strand, within ABZR87_RS01110 at 230.610 kb on + strand, within ABZR87_RS01110 at 230.610 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.634 kb on + strand, within ABZR87_RS01110 at 230.635 kb on - strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.901 kb on + strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 230.902 kb on - strand, within ABZR87_RS01110 at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.335 kb on + strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.336 kb on - strand at 231.337 kb on + strand at 231.337 kb on + strand at 231.338 kb on - strand at 231.357 kb on + strand at 231.357 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.390 kb on + strand at 231.391 kb on - strand at 231.391 kb on - strand at 231.391 kb on - strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.395 kb on + strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.396 kb on - strand at 231.476 kb on + strand at 231.477 kb on - strand at 231.576 kb on + strand, within ABZR87_RS01115 at 231.576 kb on + strand, within ABZR87_RS01115 at 231.633 kb on - strand, within ABZR87_RS01115 at 231.692 kb on + strand, within ABZR87_RS01115 at 231.692 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.962 kb on + strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 231.963 kb on - strand, within ABZR87_RS01115 at 232.149 kb on - strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.166 kb on + strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.167 kb on - strand, within ABZR87_RS01115 at 232.178 kb on + strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115 at 232.179 kb on - strand, within ABZR87_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 229,339 + ABZR87_RS01105 0.69 +2.8 229,339 + ABZR87_RS01105 0.69 -1.0 229,340 - ABZR87_RS01105 0.69 -1.8 229,408 + ABZR87_RS01105 0.74 +0.9 229,408 + ABZR87_RS01105 0.74 +0.2 229,409 - ABZR87_RS01105 0.74 -0.9 229,444 + ABZR87_RS01105 0.76 -1.9 229,444 + ABZR87_RS01105 0.76 -0.6 229,444 + ABZR87_RS01105 0.76 +1.6 229,444 + ABZR87_RS01105 0.76 +0.3 229,444 + ABZR87_RS01105 0.76 -1.9 229,444 + ABZR87_RS01105 0.76 -1.3 229,444 + ABZR87_RS01105 0.76 +0.6 229,444 + ABZR87_RS01105 0.76 -1.0 229,444 + ABZR87_RS01105 0.76 -1.1 229,444 + ABZR87_RS01105 0.76 -0.5 229,445 - ABZR87_RS01105 0.76 +1.0 229,445 - ABZR87_RS01105 0.76 +0.6 229,445 - ABZR87_RS01105 0.76 +1.6 229,445 - ABZR87_RS01105 0.76 +1.1 229,445 - ABZR87_RS01105 0.76 +0.4 229,445 - ABZR87_RS01105 0.76 +2.8 229,504 + ABZR87_RS01105 0.80 +0.9 229,504 + ABZR87_RS01105 0.80 +1.6 229,504 + ABZR87_RS01105 0.80 +3.3 229,504 + ABZR87_RS01105 0.80 +1.1 229,505 - ABZR87_RS01105 0.80 +0.1 229,505 - ABZR87_RS01105 0.80 -0.4 229,505 - ABZR87_RS01105 0.80 -0.3 229,505 - ABZR87_RS01105 0.80 +0.6 229,576 + ABZR87_RS01105 0.85 -0.2 229,576 + ABZR87_RS01105 0.85 +1.3 229,577 - ABZR87_RS01105 0.85 -0.9 229,863 + -2.8 229,863 + +0.6 229,863 + -0.6 229,864 - -0.6 229,864 - -0.7 229,865 + -1.9 229,865 + -0.1 229,865 + +0.4 229,865 + +0.1 229,866 - +0.5 229,866 - -2.1 229,866 - -1.8 229,866 - -0.7 229,866 - -0.2 229,894 - -0.6 229,894 - -0.9 229,977 - -1.5 229,977 - +0.3 230,031 - -1.9 230,137 + -1.8 230,137 + +0.2 230,137 + +0.2 230,138 - -1.1 230,138 - -0.9 230,138 - -0.9 230,138 - -1.3 230,138 - -1.4 230,151 - -0.3 230,151 - -0.9 230,151 - -1.8 230,289 + ABZR87_RS01110 0.10 -1.4 230,289 + ABZR87_RS01110 0.10 -0.8 230,289 + ABZR87_RS01110 0.10 -1.1 230,289 + ABZR87_RS01110 0.10 -2.7 230,289 + ABZR87_RS01110 0.10 -0.9 230,289 + ABZR87_RS01110 0.10 -2.4 230,289 + ABZR87_RS01110 0.10 -2.3 230,290 - ABZR87_RS01110 0.10 -2.0 230,290 - ABZR87_RS01110 0.10 -2.1 230,395 - ABZR87_RS01110 0.20 +0.1 230,460 + ABZR87_RS01110 0.26 -2.2 230,460 + ABZR87_RS01110 0.26 -0.7 230,460 + ABZR87_RS01110 0.26 -0.8 230,610 + ABZR87_RS01110 0.40 -0.8 230,610 + ABZR87_RS01110 0.40 +1.2 230,634 + ABZR87_RS01110 0.42 -1.3 230,634 + ABZR87_RS01110 0.42 +1.7 230,634 + ABZR87_RS01110 0.42 -0.0 230,635 - ABZR87_RS01110 0.42 -1.5 230,901 + ABZR87_RS01110 0.67 -1.3 230,901 + ABZR87_RS01110 0.67 -1.2 230,901 + ABZR87_RS01110 0.67 -1.4 230,902 - ABZR87_RS01110 0.67 -1.7 230,902 - ABZR87_RS01110 0.67 -1.5 230,902 - ABZR87_RS01110 0.67 -1.1 230,902 - ABZR87_RS01110 0.67 -1.1 230,902 - ABZR87_RS01110 0.67 -2.0 231,335 + +0.1 231,335 + +2.2 231,335 + +0.2 231,335 + +0.6 231,335 + +0.8 231,335 + -2.3 231,335 + -0.7 231,336 - -1.5 231,336 - +2.0 231,336 - -0.9 231,336 - -0.2 231,336 - -0.2 231,336 - +0.9 231,336 - +0.4 231,337 + +1.5 231,337 + +0.7 231,338 - +0.8 231,357 + +0.5 231,357 + -0.6 231,390 + -2.0 231,390 + -0.4 231,390 + -0.8 231,390 + -0.6 231,390 + +0.3 231,390 + +0.5 231,390 + -0.3 231,391 - -0.4 231,391 - +0.1 231,391 - -0.5 231,395 + -0.4 231,395 + -0.4 231,395 + +0.6 231,395 + -1.4 231,396 - +0.2 231,396 - -0.2 231,396 - -0.8 231,396 - -2.3 231,396 - -1.4 231,396 - -2.2 231,396 - -0.5 231,396 - +0.2 231,396 - -1.7 231,396 - -0.6 231,396 - -0.8 231,396 - -0.7 231,476 + -2.3 231,477 - -1.3 231,576 + ABZR87_RS01115 0.16 -2.1 231,576 + ABZR87_RS01115 0.16 -0.1 231,633 - ABZR87_RS01115 0.22 +0.6 231,692 + ABZR87_RS01115 0.29 +0.0 231,692 + ABZR87_RS01115 0.29 -0.7 231,962 + ABZR87_RS01115 0.59 -1.1 231,962 + ABZR87_RS01115 0.59 -2.0 231,962 + ABZR87_RS01115 0.59 +0.9 231,962 + ABZR87_RS01115 0.59 -0.5 231,963 - ABZR87_RS01115 0.59 +1.8 231,963 - ABZR87_RS01115 0.59 -3.6 231,963 - ABZR87_RS01115 0.59 +1.1 232,149 - ABZR87_RS01115 0.80 -1.7 232,166 + ABZR87_RS01115 0.81 +3.2 232,166 + ABZR87_RS01115 0.81 +0.5 232,166 + ABZR87_RS01115 0.81 +0.7 232,167 - ABZR87_RS01115 0.82 +0.5 232,167 - ABZR87_RS01115 0.82 +0.3 232,167 - ABZR87_RS01115 0.82 -0.4 232,178 + ABZR87_RS01115 0.83 -0.6 232,179 - ABZR87_RS01115 0.83 +1.1 232,179 - ABZR87_RS01115 0.83 +2.8 232,179 - ABZR87_RS01115 0.83 +0.7
Or see this region's nucleotide sequence