Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00620 and ABZR87_RS00625 are separated by 167 nucleotides ABZR87_RS00625 and ABZR87_RS00630 are separated by 67 nucleotides
ABZR87_RS00620: ABZR87_RS00620 - sulfite exporter TauE/SafE family protein, at 128,513 to 129,280
_RS00620
ABZR87_RS00625: ABZR87_RS00625 - hypothetical protein, at 129,448 to 129,897
_RS00625
ABZR87_RS00630: ABZR87_RS00630 - GntP family permease, at 129,965 to 131,365
_RS00630
Position (kb) 129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.473 kb on + strand at 128.473 kb on + strand at 128.512 kb on + strand at 128.805 kb on + strand, within ABZR87_RS00620 at 128.806 kb on - strand, within ABZR87_RS00620 at 128.808 kb on + strand, within ABZR87_RS00620 at 128.808 kb on + strand, within ABZR87_RS00620 at 128.809 kb on - strand, within ABZR87_RS00620 at 128.852 kb on + strand, within ABZR87_RS00620 at 128.852 kb on + strand, within ABZR87_RS00620 at 128.853 kb on - strand, within ABZR87_RS00620 at 128.853 kb on - strand, within ABZR87_RS00620 at 128.981 kb on + strand, within ABZR87_RS00620 at 128.982 kb on - strand, within ABZR87_RS00620 at 129.339 kb on + strand at 129.339 kb on + strand at 129.340 kb on - strand at 129.365 kb on + strand at 129.366 kb on - strand at 129.366 kb on - strand at 129.631 kb on + strand, within ABZR87_RS00625 at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.984 kb on + strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 129.985 kb on - strand at 130.050 kb on + strand at 130.371 kb on + strand, within ABZR87_RS00630 at 130.372 kb on - strand, within ABZR87_RS00630 at 130.731 kb on + strand, within ABZR87_RS00630 at 130.732 kb on - strand, within ABZR87_RS00630 at 130.776 kb on + strand, within ABZR87_RS00630 at 130.816 kb on + strand, within ABZR87_RS00630 at 130.816 kb on + strand, within ABZR87_RS00630
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 128,473 + +0.5 128,473 + +1.7 128,512 + +2.4 128,805 + ABZR87_RS00620 0.38 -0.5 128,806 - ABZR87_RS00620 0.38 -0.6 128,808 + ABZR87_RS00620 0.38 -0.6 128,808 + ABZR87_RS00620 0.38 -1.8 128,809 - ABZR87_RS00620 0.39 +0.2 128,852 + ABZR87_RS00620 0.44 -0.8 128,852 + ABZR87_RS00620 0.44 +0.9 128,853 - ABZR87_RS00620 0.44 +0.8 128,853 - ABZR87_RS00620 0.44 +1.1 128,981 + ABZR87_RS00620 0.61 -1.0 128,982 - ABZR87_RS00620 0.61 -0.5 129,339 + +1.1 129,339 + -0.2 129,340 - +0.2 129,365 + +0.1 129,366 - -0.2 129,366 - +0.6 129,631 + ABZR87_RS00625 0.41 -2.1 129,984 + +2.0 129,984 + +0.1 129,984 + -1.6 129,984 + +1.9 129,984 + -0.2 129,984 + +0.3 129,985 - -0.3 129,985 - -1.9 129,985 - +0.4 129,985 - +1.6 129,985 - -0.1 129,985 - -1.7 129,985 - +0.7 130,050 + +0.3 130,371 + ABZR87_RS00630 0.29 -0.4 130,372 - ABZR87_RS00630 0.29 -0.2 130,731 + ABZR87_RS00630 0.55 -1.7 130,732 - ABZR87_RS00630 0.55 -0.4 130,776 + ABZR87_RS00630 0.58 -1.0 130,816 + ABZR87_RS00630 0.61 -0.9 130,816 + ABZR87_RS00630 0.61 -0.1
Or see this region's nucleotide sequence