Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00615

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00610 and ABZR87_RS00615 overlap by 19 nucleotidesABZR87_RS00615 and ABZR87_RS00620 are separated by 70 nucleotides ABZR87_RS00610: ABZR87_RS00610 - HD-GYP domain-containing protein, at 125,696 to 126,904 _RS00610 ABZR87_RS00615: ABZR87_RS00615 - glycine betaine ABC transporter substrate-binding protein, at 126,886 to 128,442 _RS00615 ABZR87_RS00620: ABZR87_RS00620 - sulfite exporter TauE/SafE family protein, at 128,513 to 129,280 _RS00620 Position (kb) 126 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.172 kb on + strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.173 kb on - strand, within ABZR87_RS00610at 126.531 kb on + strand, within ABZR87_RS00610at 126.531 kb on + strand, within ABZR87_RS00610at 126.531 kb on + strand, within ABZR87_RS00610at 126.531 kb on + strand, within ABZR87_RS00610at 126.531 kb on + strand, within ABZR87_RS00610at 126.532 kb on - strand, within ABZR87_RS00610at 126.532 kb on - strand, within ABZR87_RS00610at 126.533 kb on + strand, within ABZR87_RS00610at 126.533 kb on + strand, within ABZR87_RS00610at 126.533 kb on + strand, within ABZR87_RS00610at 126.534 kb on - strand, within ABZR87_RS00610at 126.560 kb on + strand, within ABZR87_RS00610at 126.560 kb on + strand, within ABZR87_RS00610at 126.560 kb on + strand, within ABZR87_RS00610at 126.560 kb on + strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.561 kb on - strand, within ABZR87_RS00610at 126.585 kb on - strand, within ABZR87_RS00610at 126.660 kb on + strand, within ABZR87_RS00610at 126.661 kb on - strand, within ABZR87_RS00610at 126.661 kb on - strand, within ABZR87_RS00610at 126.661 kb on - strand, within ABZR87_RS00610at 126.661 kb on - strand, within ABZR87_RS00610at 126.668 kb on + strand, within ABZR87_RS00610at 126.668 kb on + strand, within ABZR87_RS00610at 126.668 kb on + strand, within ABZR87_RS00610at 126.669 kb on - strand, within ABZR87_RS00610at 126.669 kb on - strand, within ABZR87_RS00610at 126.763 kb on - strand, within ABZR87_RS00610at 126.763 kb on - strand, within ABZR87_RS00610at 126.763 kb on - strand, within ABZR87_RS00610at 126.821 kb on - strandat 126.892 kb on - strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.024 kb on + strandat 127.025 kb on - strandat 127.025 kb on - strandat 127.082 kb on + strand, within ABZR87_RS00615at 127.083 kb on - strand, within ABZR87_RS00615at 127.083 kb on - strand, within ABZR87_RS00615at 127.083 kb on - strand, within ABZR87_RS00615at 127.153 kb on + strand, within ABZR87_RS00615at 127.300 kb on + strand, within ABZR87_RS00615at 127.300 kb on + strand, within ABZR87_RS00615at 127.300 kb on + strand, within ABZR87_RS00615at 127.300 kb on + strand, within ABZR87_RS00615at 127.301 kb on - strand, within ABZR87_RS00615at 127.301 kb on - strand, within ABZR87_RS00615at 127.353 kb on - strand, within ABZR87_RS00615at 127.444 kb on + strand, within ABZR87_RS00615at 127.444 kb on + strand, within ABZR87_RS00615at 127.444 kb on + strand, within ABZR87_RS00615at 127.445 kb on - strand, within ABZR87_RS00615at 127.445 kb on - strand, within ABZR87_RS00615at 127.489 kb on + strand, within ABZR87_RS00615at 127.531 kb on + strand, within ABZR87_RS00615at 127.532 kb on - strand, within ABZR87_RS00615at 127.532 kb on - strand, within ABZR87_RS00615at 127.532 kb on - strand, within ABZR87_RS00615at 127.622 kb on - strand, within ABZR87_RS00615at 127.848 kb on + strand, within ABZR87_RS00615at 127.848 kb on + strand, within ABZR87_RS00615at 127.848 kb on + strand, within ABZR87_RS00615at 127.848 kb on + strand, within ABZR87_RS00615at 127.849 kb on - strand, within ABZR87_RS00615at 127.849 kb on - strand, within ABZR87_RS00615at 127.875 kb on + strand, within ABZR87_RS00615at 127.876 kb on - strand, within ABZR87_RS00615at 128.010 kb on + strand, within ABZR87_RS00615at 128.011 kb on - strand, within ABZR87_RS00615at 128.011 kb on - strand, within ABZR87_RS00615at 128.011 kb on - strand, within ABZR87_RS00615at 128.065 kb on + strand, within ABZR87_RS00615at 128.065 kb on + strand, within ABZR87_RS00615at 128.066 kb on - strand, within ABZR87_RS00615at 128.066 kb on - strand, within ABZR87_RS00615at 128.247 kb on + strand, within ABZR87_RS00615at 128.440 kb on + strandat 128.441 kb on - strandat 128.473 kb on + strandat 128.473 kb on + strandat 128.512 kb on + strandat 128.805 kb on + strand, within ABZR87_RS00620at 128.806 kb on - strand, within ABZR87_RS00620at 128.808 kb on + strand, within ABZR87_RS00620at 128.808 kb on + strand, within ABZR87_RS00620at 128.809 kb on - strand, within ABZR87_RS00620at 128.852 kb on + strand, within ABZR87_RS00620at 128.852 kb on + strand, within ABZR87_RS00620at 128.853 kb on - strand, within ABZR87_RS00620at 128.853 kb on - strand, within ABZR87_RS00620at 128.981 kb on + strand, within ABZR87_RS00620at 128.982 kb on - strand, within ABZR87_RS00620at 129.339 kb on + strandat 129.339 kb on + strandat 129.340 kb on - strandat 129.365 kb on + strandat 129.366 kb on - strandat 129.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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126,172 + ABZR87_RS00610 0.39 -1.9
126,172 + ABZR87_RS00610 0.39 +0.4
126,172 + ABZR87_RS00610 0.39 -0.9
126,172 + ABZR87_RS00610 0.39 -0.3
126,172 + ABZR87_RS00610 0.39 -0.1
126,172 + ABZR87_RS00610 0.39 +0.2
126,172 + ABZR87_RS00610 0.39 +0.4
126,172 + ABZR87_RS00610 0.39 +0.2
126,173 - ABZR87_RS00610 0.39 +0.9
126,173 - ABZR87_RS00610 0.39 -1.4
126,173 - ABZR87_RS00610 0.39 -0.2
126,173 - ABZR87_RS00610 0.39 +0.4
126,173 - ABZR87_RS00610 0.39 -0.2
126,173 - ABZR87_RS00610 0.39 +1.3
126,173 - ABZR87_RS00610 0.39 -0.2
126,173 - ABZR87_RS00610 0.39 +0.6
126,173 - ABZR87_RS00610 0.39 -0.5
126,173 - ABZR87_RS00610 0.39 -2.3
126,173 - ABZR87_RS00610 0.39 -0.4
126,173 - ABZR87_RS00610 0.39 -0.9
126,531 + ABZR87_RS00610 0.69 -0.0
126,531 + ABZR87_RS00610 0.69 -0.0
126,531 + ABZR87_RS00610 0.69 +2.2
126,531 + ABZR87_RS00610 0.69 -0.8
126,531 + ABZR87_RS00610 0.69 +0.2
126,532 - ABZR87_RS00610 0.69 -0.6
126,532 - ABZR87_RS00610 0.69 -0.4
126,533 + ABZR87_RS00610 0.69 +0.3
126,533 + ABZR87_RS00610 0.69 +0.9
126,533 + ABZR87_RS00610 0.69 +1.2
126,534 - ABZR87_RS00610 0.69 -1.4
126,560 + ABZR87_RS00610 0.71 +0.1
126,560 + ABZR87_RS00610 0.71 -1.1
126,560 + ABZR87_RS00610 0.71 -1.4
126,560 + ABZR87_RS00610 0.71 -0.9
126,561 - ABZR87_RS00610 0.72 -0.0
126,561 - ABZR87_RS00610 0.72 +0.8
126,561 - ABZR87_RS00610 0.72 +0.7
126,561 - ABZR87_RS00610 0.72 -0.1
126,561 - ABZR87_RS00610 0.72 +0.6
126,561 - ABZR87_RS00610 0.72 +0.3
126,561 - ABZR87_RS00610 0.72 +1.5
126,561 - ABZR87_RS00610 0.72 +0.4
126,585 - ABZR87_RS00610 0.74 +0.8
126,660 + ABZR87_RS00610 0.80 -0.5
126,661 - ABZR87_RS00610 0.80 +0.8
126,661 - ABZR87_RS00610 0.80 +0.4
126,661 - ABZR87_RS00610 0.80 +0.1
126,661 - ABZR87_RS00610 0.80 +1.7
126,668 + ABZR87_RS00610 0.80 -0.1
126,668 + ABZR87_RS00610 0.80 -1.2
126,668 + ABZR87_RS00610 0.80 +0.9
126,669 - ABZR87_RS00610 0.80 +1.0
126,669 - ABZR87_RS00610 0.80 -0.7
126,763 - ABZR87_RS00610 0.88 +0.3
126,763 - ABZR87_RS00610 0.88 +2.0
126,763 - ABZR87_RS00610 0.88 -0.5
126,821 - -0.7
126,892 - -0.3
127,024 + -1.7
127,024 + +0.4
127,024 + +0.9
127,024 + -0.5
127,024 + +0.0
127,024 + +0.4
127,024 + +0.6
127,024 + +1.3
127,025 - +0.4
127,025 - -1.5
127,082 + ABZR87_RS00615 0.13 -0.7
127,083 - ABZR87_RS00615 0.13 -0.5
127,083 - ABZR87_RS00615 0.13 -1.9
127,083 - ABZR87_RS00615 0.13 -0.3
127,153 + ABZR87_RS00615 0.17 +1.0
127,300 + ABZR87_RS00615 0.27 -1.2
127,300 + ABZR87_RS00615 0.27 -1.5
127,300 + ABZR87_RS00615 0.27 -1.0
127,300 + ABZR87_RS00615 0.27 -1.7
127,301 - ABZR87_RS00615 0.27 +0.3
127,301 - ABZR87_RS00615 0.27 -0.0
127,353 - ABZR87_RS00615 0.30 +1.3
127,444 + ABZR87_RS00615 0.36 -0.5
127,444 + ABZR87_RS00615 0.36 -0.0
127,444 + ABZR87_RS00615 0.36 -0.2
127,445 - ABZR87_RS00615 0.36 +0.3
127,445 - ABZR87_RS00615 0.36 -0.8
127,489 + ABZR87_RS00615 0.39 +1.8
127,531 + ABZR87_RS00615 0.41 -0.2
127,532 - ABZR87_RS00615 0.41 +1.7
127,532 - ABZR87_RS00615 0.41 -0.8
127,532 - ABZR87_RS00615 0.41 -0.9
127,622 - ABZR87_RS00615 0.47 +0.9
127,848 + ABZR87_RS00615 0.62 +0.8
127,848 + ABZR87_RS00615 0.62 -1.0
127,848 + ABZR87_RS00615 0.62 +1.2
127,848 + ABZR87_RS00615 0.62 +0.9
127,849 - ABZR87_RS00615 0.62 -0.3
127,849 - ABZR87_RS00615 0.62 -1.2
127,875 + ABZR87_RS00615 0.64 +0.7
127,876 - ABZR87_RS00615 0.64 +1.0
128,010 + ABZR87_RS00615 0.72 -1.1
128,011 - ABZR87_RS00615 0.72 -0.4
128,011 - ABZR87_RS00615 0.72 -0.2
128,011 - ABZR87_RS00615 0.72 +1.2
128,065 + ABZR87_RS00615 0.76 +0.1
128,065 + ABZR87_RS00615 0.76 -1.2
128,066 - ABZR87_RS00615 0.76 -0.1
128,066 - ABZR87_RS00615 0.76 -1.4
128,247 + ABZR87_RS00615 0.87 -0.6
128,440 + +1.0
128,441 - -1.7
128,473 + +0.5
128,473 + +1.7
128,512 + +2.4
128,805 + ABZR87_RS00620 0.38 -0.5
128,806 - ABZR87_RS00620 0.38 -0.6
128,808 + ABZR87_RS00620 0.38 -0.6
128,808 + ABZR87_RS00620 0.38 -1.8
128,809 - ABZR87_RS00620 0.39 +0.2
128,852 + ABZR87_RS00620 0.44 -0.8
128,852 + ABZR87_RS00620 0.44 +0.9
128,853 - ABZR87_RS00620 0.44 +0.8
128,853 - ABZR87_RS00620 0.44 +1.1
128,981 + ABZR87_RS00620 0.61 -1.0
128,982 - ABZR87_RS00620 0.61 -0.5
129,339 + +1.1
129,339 + -0.2
129,340 - +0.2
129,365 + +0.1
129,366 - -0.2
129,366 - +0.6

Or see this region's nucleotide sequence