Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3773

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3771 and Rru_A3772 overlap by 11 nucleotidesRru_A3772 and Rru_A3773 overlap by 4 nucleotidesRru_A3773 and Rru_A3774 are separated by 1 nucleotides Rru_A3771: Rru_A3771 - PhoH-like protein (NCBI), at 4,319,690 to 4,320,658 _A3771 Rru_A3772: Rru_A3772 - Protein of unknown function UPF0054 (NCBI), at 4,320,648 to 4,321,250 _A3772 Rru_A3773: Rru_A3773 - CBS domain protein (NCBI), at 4,321,247 to 4,322,203 _A3773 Rru_A3774: Rru_A3774 - Apolipoprotein N-acyltransferase (NCBI), at 4,322,205 to 4,323,800 _A3774 Position (kb) 4321 4322 4323Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4320.248 kb on + strand, within Rru_A3771at 4320.248 kb on + strand, within Rru_A3771at 4320.248 kb on + strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.249 kb on - strand, within Rru_A3771at 4320.260 kb on + strand, within Rru_A3771at 4320.261 kb on - strand, within Rru_A3771at 4320.443 kb on - strand, within Rru_A3771at 4320.556 kb on + strand, within Rru_A3771at 4320.556 kb on + strand, within Rru_A3771at 4320.608 kb on + strandat 4320.608 kb on + strandat 4320.609 kb on - strandat 4321.492 kb on + strand, within Rru_A3773at 4321.492 kb on + strand, within Rru_A3773at 4321.492 kb on + strand, within Rru_A3773at 4321.802 kb on + strand, within Rru_A3773at 4321.802 kb on + strand, within Rru_A3773

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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4,320,248 + Rru_A3771 0.58 +0.3
4,320,248 + Rru_A3771 0.58 +0.3
4,320,248 + Rru_A3771 0.58 +0.4
4,320,249 - Rru_A3771 0.58 +0.5
4,320,249 - Rru_A3771 0.58 -2.1
4,320,249 - Rru_A3771 0.58 -0.7
4,320,249 - Rru_A3771 0.58 +2.2
4,320,249 - Rru_A3771 0.58 -1.8
4,320,260 + Rru_A3771 0.59 +1.5
4,320,261 - Rru_A3771 0.59 -1.9
4,320,443 - Rru_A3771 0.78 -0.5
4,320,556 + Rru_A3771 0.89 +0.9
4,320,556 + Rru_A3771 0.89 +0.3
4,320,608 + -0.3
4,320,608 + -0.2
4,320,609 - -1.9
4,321,492 + Rru_A3773 0.26 -1.0
4,321,492 + Rru_A3773 0.26 +0.8
4,321,492 + Rru_A3773 0.26 -3.3
4,321,802 + Rru_A3773 0.58 -1.5
4,321,802 + Rru_A3773 0.58 +0.7

Or see this region's nucleotide sequence